🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Christopher Vollmers

University of California, Santa Cruz

ORCID: 0000-0002-7626-6222

Also affiliated with University of California System, Santa Cruz County Office of Education

Biochemistry, Genetics and Molecular BiologyImmunology and MicrobiologyNeuroscience

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
4.0Author DataRank

Indexed papers

4in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Nature Methods(2024)10.1038/s41592-024-02298-3
Top 8%
2.8DataRank
Top 8%216 citations

Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams +80 more

Papers

Driven by 24 papers — median percentile 60. Top paper: “Systematic assessment of long-read RNA-seq methods for transcript identification and quantification”.

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Nature Methods(2024)10.1038/s41592-024-02298-3
Top 8%
2.8DataRank
Top 8%216 citations

Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams +80 more

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.25.550582
Top 20%
0.991DataRank
Top 20%28 citations

Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams +78 more

Characterization of a COPD-Associated NPNT Functional Splicing Genetic Variant in Human Lung Tissue via Long-Read Sequencing

medRxiv(2020)10.1101/2020.10.20.20203927
N/A
0.622DataRank · unranked
13 citations

Zhonghui Xu, Gloria Sheynkman, Craig P. Hersh, Michael H. Cho, Edwin K. Silverman +4 more

Identifying and quantifying isoforms from accurate full-length transcriptome sequencing reads with Mandalorion

Genome biology(2023)10.1186/s13059-023-02999-6
N/A
0.553DataRank · unranked
39 citations

Kayla D. Schimke, Ashley Byrne, Danilo Dubocanin, Matthew S. Adams, Christopher Vollmers +1 more

Sequencing Illumina libraries at high accuracy on the ONT MinION using R2C2

Genome Research(2022)10.1101/gr.277031.122
N/A
0.489DataRank · unranked
25 citations

Dori Z.Q. Deng, Matthew S. Adams, Kayla D. Schimke, Russell Corbett‐Detig, Shelbi L. Russell +4 more

Long-read subcellular fractionation and sequencing reveals the translational fate of full-length mRNA isoforms during neuronal differentiation

Genome Research(2024)10.1101/gr.279170.124
N/A
0.482DataRank · unranked
8 citations

Jolene M. Draper, Christopher Vollmers, Jeremy R. Sanford, Alexander Ritter

Whole-genome sequence and assembly of the Javan gibbon (Hylobates moloch)

Journal of Heredity(2022)10.1093/jhered/esac043
N/A
0.292DataRank · unranked
6 citations

Jake VanCampen, Nicholas Maurer, Marina Haukness, Mariam Okhovat, Robert S. Harris +9 more

Generation and analysis of a mouse multitissue genome annotation atlas

Genome Research(2024)10.1101/gr.279217.124
Top 60%
0.243DataRank
Top 60%3 citations

Christopher Vollmers, Matthew S. Adams

JARID1a Ablation in the Liver Alters Systemic Metabolism and Adaptation to Feeding

Cell Reports(2020)10.1016/j.celrep.2020.107668
N/A
0.208DataRank · unranked
3 citations

Diana Kalinowska, Anand Saran, Ashley Byrne, Christopher Vollmers, Luciano DiTacchio +1 more

R2C2+UMI: Combining concatemeric consensus sequencing with unique molecular identifiers enables ultra-accurate sequencing of amplicons on Oxford Nanopore Technologies sequencers

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.19.553937
N/A
0DataRank · unranked
6 citations

Jack Verhage, Celine Neudorf, Russell Corbett‐Detig, Honey Mekonen, Peter J. Castaldi +2 more

R2C2 + UMI: Combining concatemeric and unique molecular identifier–based consensus sequencing enables ultra-accurate sequencing of amplicons on Oxford Nanopore Technologies sequencers

PNAS Nexus(2024)10.1093/pnasnexus/pgae336
N/A
0DataRank · unranked
14 citations

Jack Verhage, Celine Neudorf, Russell Corbett‐Detig, Honey Mekonen, Peter J. Castaldi +2 more

B cell immune repertoire sequencing in tobacco cigarette smoking, vaping, and chronic obstructive pulmonary disease in the COPDGene cohort

medRxiv(2024)10.1101/2024.10.07.24315038
N/A
0DataRank · unranked
1 citations

Zhonghui Xu, Adel Boueiz, Min Hyung Ryu, Edwin K. Silverman, Michael H. Cho +9 more

Generation and analysis of a mouse multi-tissue genome annotation atlas

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.31.578267
Top 100%
0DataRank
Top 100%0 citations

Christopher Vollmers, Matthew S. Adams

Characterisation of a COPD-associated nephronectin (NPNT) functional splicing genetic variant in human lung tissuevialong-read sequencing

European Respiratory Journal(2025)10.1183/13993003.01407-2024
N/A
0DataRank · unranked
6 citations

Anastacia Wienecke, Zhonghui Xu, Tao Liu, Gloria Sheynkman, Craig P. Hersh +11 more

High-Throughput CRISPR Screening Identifies Genes Involved in Macrophage Viability and Inflammatory Pathways

Cell Reports(2020)10.1016/j.celrep.2020.108541
N/A
0DataRank · unranked
59 citations

Apple Cortez Vollmers, Allyson Capili, Michael Boettcher, Aaron Shulkin, Michele Ramos Correa +9 more

A Temporal and Spatial Atlas of Adaptive Immune Responses in the Lymph Node Following Viral Infection

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.31.635509
N/A
0DataRank · unranked
3 citations

Madhav Mantri, Viviana I. Maymí, Scott A. Leddon, Peter A. Schweitzer, Subash Bhandari +8 more

Horizontal transmission and recombination maintain forever young bacterial symbiont genomes

PLoS Genetics(2020)10.1371/journal.pgen.1008935
N/A
0DataRank · unranked
50 citations

Evan Pepper-Tunick, Jesper Svedberg, Ashley Byrne, Jennie Ruelas Castillo, Christopher Vollmers +3 more

One fly–one genome: chromosome-scale genome assembly of a single outbred Drosophila melanogaster

Nucleic Acids Research(2020)10.1093/nar/gkaa450
N/A
0DataRank · unranked
35 citations

Jakob McBroome, Nicholas Maurer, Evan Pepper-Tunick, Nedda F. Saremi, Richard E. Green +3 more

Isoform-level transcriptome Atlas of Macrophage Activation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.20.423532
N/A
0DataRank · unranked
2 citations

Honey Mekonen, Sophia Campos, Susan Carpenter, Christopher Vollmers, Apple Cortez Vollmers

Reintroduction of the archaic variant of NOVA1 in cortical organoids alters neurodevelopment

Science(2021)10.1126/science.aax2537
N/A
0DataRank · unranked
143 citations

Edward S. Rice, Nathan K. Schaefer, Isaac A. Chaim, Emily C. Wheeler, Assael A. Madrigal +22 more

A conserved long noncoding RNA, GAPLINC, modulates the immune response during endotoxic shock

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2016648118
N/A
0DataRank · unranked
50 citations

Sergio Covarrubias, Daisy Kuang, Aaron Shulkin, Justin Iwuagwu, Sol Katzman +6 more

Generation of an isoform-level transcriptome atlas of macrophage activation

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.100784
N/A
0DataRank · unranked
34 citations

Honey Mekonen, Sophia Campos, Susan Carpenter, Christopher Vollmers, Apple Cortez Vollmers

Illumina But With Nanopore: Sequencing Illumina libraries at high accuracy on the ONT MinION using R2C2

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.30.466545
N/A
0DataRank · unranked
1 citations

Dori Z.Q. Deng, Matthew S. Adams, Kayla D. Schimke, Russell Corbett‐Detig, Shelbi L. Russell +4 more

Identifying and quantifying isoforms from accurate full-length transcriptome sequencing reads with Mandalorion

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.29.498139
N/A
0DataRank · unranked
6 citations

Kayla D. Schimke, Ashley Byrne, Danilo Dubocanin, Matthew Adams, Christopher Vollmers +1 more