Athma A. Pai

University of Massachusetts Chan Medical School

Also affiliated with UMass Memorial Medical Center

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

7.7Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

Genome Research(2010)10.1101/gr.112623.110

Top 2%

7.7DataRank

Top 2%588 citations

Jacob F. Degner, Athma A. Pai, Daniel J. Gaffney, Yoav Gilad, Jonathan K. Pritchard +1 more

Papers

Driven by 18 papers — median percentile 98. Top paper: “Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data”.

Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

Genome Research(2010)10.1101/gr.112623.110

Top 2%

7.7DataRank

Top 2%588 citations

Jacob F. Degner, Athma A. Pai, Daniel J. Gaffney, Yoav Gilad, Jonathan K. Pritchard +1 more

The combination of a genome-wide association study of lymphocyte count and analysis of gene expression data reveals novel asthma candidate genes

Human Molecular Genetics(2012)10.1093/hmg/dds021

N/A

1.9DataRank · unranked

53 citations

Christine Billstrand, Xiang Zhou, Claudia Chavarria, Sherryl De Leon, Katelyn Michelini +4 more

DNase I sensitivity QTLs are a major determinant of human expression variation

Nature(2012)10.1038/nature10808

N/A

0.984DataRank · unranked

704 citations

Athma A. Pai, Roger Pique-Regi, Jean-Baptiste Veyrieras, Daniel J. Gaffney, Joseph K. Pickrell +10 more

Widespread occurrence of hybrid internal-terminal exons in human transcriptomes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.27.446076

N/A

0DataRank · unranked

1 citations

Michael P. McGurk, Ezequiel Calvo-Roitberg, Gyeungyun Kim, Christopher B. Burge, Athma A. Pai +1 more

The lncRNA LUCAT1 is elevated in inflammatory disease and restrains inflammation by regulating the splicing and stability of NR4A2

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2213715120

N/A

0DataRank · unranked

46 citations

Shiuli Agarwal, John L. Johnson, Liraz Galia, Xuqiu Lei, Karina Stein +10 more

High-throughput analysis of ANRIL circRNA isoforms in human pancreatic islets

Scientific Reports(2022)10.1038/s41598-022-11668-w

N/A

0DataRank · unranked

12 citations

Yahui Kong, Ezequiel Calvo-Roitberg, Laura Alonso, Athma A. Pai, Hannah J. MacMillan

G-rich motifs within phosphorothioate-based antisense oligonucleotides (ASOs) drive activation of FXN expression through indirect effects

Nucleic Acids Research(2022)10.1093/nar/gkac1108

N/A

0DataRank · unranked

10 citations

Ezequiel Calvo-Roitberg, Julia M Rembetsy-Brown, Minggang Fang, Jacquelyn Sousa, Zachary J. Kartje +6 more

High-throughput analysis of ANRIL circRNA isoforms in human pancreatic islets

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.03.474854

N/A

0DataRank · unranked

1 citations

Yahui Kong, Ezequiel Calvo-Roitberg, Laura Alonso, Athma A. Pai, Hannah J. MacMillan

mRNA initiation and termination are spatially coordinated

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.05.574404

N/A

0DataRank · unranked

9 citations

Christine L. Carroll, Sergey V. Venev, Gyeungyun Kim, Steven T. Mick, Job Dekker +3 more

High-resolution profiling reveals coupled transcriptional and translational regulation of transgenes

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.26.625483

N/A

0DataRank · unranked

3 citations

Deon S. Ploessl, Kasey S. Love, Valeria Sanabria, Rachel F. Daniels, Christopher P. Johnstone +6 more

Systematic analysis of siRNA and mRNA features impacting fully chemically modified siRNA efficacy

Nucleic Acids Research(2025)10.1093/nar/gkaf479

N/A

0DataRank · unranked

15 citations

Samuel Hildebrand, Hannah J. MacMillan, Kathryn Monopoli, Julianna Buchwald, Jacquelyn Sousa +20 more

Interphase chromosome conformation is specified by distinct folding programmes inherited through mitotic chromosomes or the cytoplasm

Nature Cell Biology(2025)10.1038/s41556-025-01828-1

N/A

0DataRank · unranked

10 citations

Sergey V. Venev, Vasilisa Aksenova, Jesse Lehman, Emily Navarrete, Athma A. Pai +3 more

RNA Pol II inhibition activates cell death independently from the loss of transcription

Cell(2025)10.1016/j.cell.2025.07.034

N/A

0DataRank · unranked

12 citations

Gavin A Birdsall, Megan E. Honeywell, Kelly Ward, Athma A. Pai, Michael J. Lee +1 more

High-resolution profiling reveals coupled transcriptional and translational regulation of transgenes

Nucleic Acids Research(2025)10.1093/nar/gkaf528

N/A

0DataRank · unranked

10 citations

Deon S. Ploessl, Kasey S. Love, Valeria C. Sanabria, Rachel F. Daniels, Christopher P. Johnstone +6 more

Pervasive noise in human splice site selection

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.16.665169

N/A

0DataRank · unranked

2 citations

Kaitlyn Brokaw, Zachary J. Kartje, Valeria C. Sanabria, Nida Javeed, Ayush Kumar +3 more

SPARK : in silico simulations for benchmarking nascent RNA sequencing experiments

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.06.687082

N/A

0DataRank · unranked

0 citations

Jesse Lehman, Edric Tam, Shaimae Elhajjajy, Barbara E. Engelhardt, Athma A. Pai +1 more

The kinetics of pre-mRNA splicing in the Drosophila genome and the influence of gene architecture

OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)(2020)10.7554/elife.32537.001

N/A

0DataRank · unranked

0 citations

Athma A. Pai

Self-inactivating, all-in-one AAV vectors for precision Cas9 genome editing via homology-directed repair in vivo

Nature Communications(2021)10.1038/s41467-021-26518-y

N/A

0DataRank · unranked

116 citations

Phillip W.L. Tai, Aamir Mir, Nida Javeed, Jiaming Wang, Tomás Rodríguez +15 more

Athma A. Pai

Indexed papers

Top data-sharing exemplar

Papers