James J. Cai

Texas A&M Health Science Center

Also affiliated with Singer (United States), Texas A&M University

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 36 papers. Top paper: “Single-nucleus transcriptomics of epicardial adipose tissue from female pigs reveals effects of exercise training on resident innate and adaptive immune cells”.

Single-nucleus transcriptomics of epicardial adipose tissue from female pigs reveals effects of exercise training on resident innate and adaptive immune cells

Cell Communication and Signaling(2024)10.1186/s12964-024-01587-w

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0.439DataRank · unranked

9 citations

Shreyan Gupta, Patricia Faulkner, D. Mullens, Micah Thomas, Sharanee P. Sytha +5 more

Gene products and processes contributing to lanthanide homeostasis and methanol metabolism in Methylorubrum extorquens AM1

Scientific Reports(2020)10.1038/s41598-020-69401-4

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0DataRank · unranked

100 citations

Huong N. Vu, Gabriel A. Subuyuj, Ralph Valentine Crisostomo, James J. Cai, Nicholas F. Lien +10 more

Overdispersed gene expression in schizophrenia

Schizophrenia(2020)10.1038/s41537-020-0097-5

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0DataRank · unranked

29 citations

Daniel Osorio, Jinting Guan, Guoli Ji, James J. Cai, Guangzao Huang

Antecedent presentation of neurological phenotypes in the Collaborative Cross reveals four classes with complex sex-dependencies

Scientific Reports(2020)10.1038/s41598-020-64862-z

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0DataRank · unranked

23 citations

Daniel Osorio, Katia Amstalden, Caitlin E. Edwards, Colin R. Young, James J. Cai +6 more

scTenifoldNet: a machine learning workflow for constructing and comparing transcriptome-wide gene regulatory networks from single-cell data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.12.931469

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0DataRank · unranked

6 citations

Yan Zhong, Guanxun Li, Jianhua Z. Huang, James J. Cai, Daniel Osorio

Adipose tissue inflammation and systemic insulin resistance in mice with diet-induced obesity is possibly associated with disruption of PFKFB3 in hematopoietic cells

Laboratory Investigation(2021)10.1038/s41374-020-00523-z

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0DataRank · unranked

26 citations

Xin Guo, Hang Xu, Boxiong Jiang, Honggui Li, Yina Wang +9 more

Single-cell RNA Sequencing Reveals How the Aryl Hydrocarbon Receptor Shapes Cellular Differentiation Potency in the Mouse Colon

Cancer Prevention Research(2021)10.1158/1940-6207.capr-21-0378

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0DataRank · unranked

12 citations

Daniel Osorio, Laurie A. Davidson, Huajun Han, D. Mullens, Arul Jayaraman +5 more

scTenifoldKnk: An efficient virtual knockout tool for gene function predictions via single-cell gene regulatory network perturbation

Patterns(2022)10.1016/j.patter.2022.100434

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0DataRank · unranked

170 citations

Yan Zhong, Guanxun Li, Qian Xu, Yongjian Yang, Yanan Tian +4 more

Hepatocyte Adenosine Kinase Promotes Excessive Fat Deposition and Liver Inflammation

Gastroenterology(2022)10.1053/j.gastro.2022.09.027

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0DataRank · unranked

56 citations

Juan Zheng, Qian Xu, Yongjian Yang, Jing Zhou, Xinlei Guo +13 more

Association of pyroptosis and severeness of COVID-19 as revealed by integrated single-cell transcriptome data analysis

ImmunoInformatics(2022)10.1016/j.immuno.2022.100013

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0DataRank · unranked

17 citations

Yongjian Yang, Xiuren Zhang, James J. Cai, Qian Xu

Transcriptomic Profiling of Gene Expression Associated with Granulosa Cell Tumor Development in a Mouse Model

Cancers(2022)10.3390/cancers14092184

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0DataRank · unranked

5 citations

Xin Fang, D. Mullens, James J. Cai, Ivan Ivanov, Laurent Bartholin +2 more

A developmental program that regulates mammalian organ size offsets evolutionary distance

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.19.512107

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0DataRank · unranked

3 citations

Junichi Tanaka, Miwako Kakiuchi, Hemanta Sarmah, Akihiro Miura, Youngmin Hwang +6 more

Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.10.516003

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0DataRank · unranked

3 citations

Hua Zhou, Nina Shenker-Tauris, Hortense Le, Theodore Sakellaropoulos, Nicolas Coudray +32 more

A Unified Bayesian Framework for Bi-overlapping-Clustering Multi-omics Data via Sparse Matrix Factorization

Statistics in Biosciences(2022)10.1007/s12561-022-09350-w

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0DataRank · unranked

0 citations

Kejun He, James J. Cai, Laurie A. Davidson, Robert S. Chapkin, Yang Ni +1 more

Suppression of FOXO1 attenuates inflamm‐aging and improves liver function during aging

Aging Cell(2023)10.1111/acel.13968

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0DataRank · unranked

33 citations

Da Mi Kim, Wen G. Jiang, Weiqi Ai, Quan Pan, Shahina Rahman +5 more

Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma

Nature Communications(2023)10.1038/s41467-023-42327-x

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0DataRank · unranked

29 citations

Hua Zhou, Nina Murrell, Hortense Le, Theodore Sakellaropoulos, Nicolas Coudray +35 more

scTenifoldXct: A semi-supervised method for predicting cell-cell interactions and mapping cellular communication graphs

Cell Systems(2023)10.1016/j.cels.2023.01.004

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0DataRank · unranked

26 citations

Guanxun Li, Yan Zhong, Qian Xu, Yu-Te Lin, Cristhian Roman-Vicharra +3 more

Aryl Hydrocarbon Receptor (AhR) Signaling in Colonic Cells and Tumors

Receptors(2023)10.3390/receptors2010005

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0DataRank · unranked

6 citations

Huajun Han, Arul Jayaraman, Laurie A. Davidson, Clinton D. Allred, Ivan Ivanov +4 more

Transcriptomic signature, bioactivity and safety of a non-hepatoxic analgesic generating AM404 in the mid-brain PAG region

Research Square(2023)10.21203/rs.3.rs-2883310/v1

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0DataRank · unranked

2 citations

Surjyadipta Bhattacharjee, Madigan M. Reid, Bokkyoo Jun, Connor Polk, Madeleine Strain +9 more

Single-nucleus transcriptomics of epicardial adipose tissue from females reveals exercise control of innate and adaptive immune cells

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.02.565385

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0DataRank · unranked

2 citations

Shreyan Gupta, Patricia Faulkner, D. Mullens, Micah Thomas, Sharanee P. Sytha +5 more

Parallel degradome-seq and DMS-MaPseq substantially revise the miRNA biogenesis atlas in Arabidopsis

Nature Plants(2024)10.1038/s41477-024-01725-9

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0DataRank · unranked

19 citations

Changhao Li, Kaiye Liu, Tianru Zhang, Qian Xu, Xindi Li +8 more

Identification of a copper-responsive small molecule inhibitor of uropathogenic Escherichia coli

Journal of Bacteriology(2024)10.1128/jb.00112-24

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0DataRank · unranked

4 citations

Amanuel Hailemariam, Yongjian Yang, Faras Mohamed, George L. Donati, Dwight Baker +4 more

Transcriptomic signature, bioactivity and safety of a non-hepatotoxic analgesic generating AM404 in the midbrain PAG region

Scientific Reports(2024)10.1038/s41598-024-61791-z

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0DataRank · unranked

3 citations

Surjyadipta Bhattacharjee, Madigan M. Reid, Bokkyoo Jun, Connor Polk, Madeleine Strain +10 more

HFD feeding for seven months abolishes STING disruption-driven but not female sex-based protection against hepatic steatosis and inflammation in mice

The Journal of Nutritional Biochemistry(2024)10.1016/j.jnutbio.2024.109770

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0DataRank · unranked

3 citations

Honggui Li, Bilian Zhu, Xiaoxiao Wang, Qian Xu, Eduardo Aquino +6 more

Incorporating prior information in gene expression network-based cancer heterogeneity analysis

Biostatistics(2024)10.1093/biostatistics/kxae028

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0DataRank · unranked

1 citations

Shaodong Xu, Yang Li, Zuojian Tang, Di Feng, James J. Cai +2 more

Novel Nuclear Roles for Testis-Specific ACTL7A and ACTL7B Supported by In Vivo Characterizations and AI Facilitated In Silico Mechanistic Modeling with Implications for Epigenetic Regulation in Spermiogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.29.582797

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0DataRank · unranked

1 citations

Srijana Upadhyay, James J. Cai, Tracy M. Clement, Pierre Ferrer

Novel Nuclear Roles for Testis-Specific ACTL7A and ACTL7B Supported by In Vivo Characterizations and AI Facilitated In Silico Mechanistic Modeling with Implications for Epigenetic Regulation in Spermiogenesis

eLife(2024)10.7554/elife.95378

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0DataRank · unranked

0 citations

Srijana Upadhyay, James J. Cai, Tracy M. Clement, Pierre Ferrer

Reviewer #1 (Public Review): Novel Nuclear Roles for Testis-Specific ACTL7A and ACTL7B Supported by In Vivo Characterizations and AI Facilitated In Silico Mechanistic Modeling with Implications for Epigenetic Regulation in Spermiogenesis

(2024)10.7554/elife.95378.1.sa2

N/A

0DataRank · unranked

0 citations

Srijana Upadhyay, James J. Cai, Tracy M. Clement, Pierre Ferrer

LILRB4 regulates circadian disruption-induced mammary tumorigenesis via non-canonical WNT signaling pathway

Oncogene(2025)10.1038/s41388-025-03597-5

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0DataRank · unranked

3 citations

Mrinmoy Sarkar, Kayla Carter, Arhit Chakrabarti, Devon J. Boland, Tristan Nguyen +13 more

FGF8 induces bone and joint regeneration at digit amputation wounds in neonate mice

Bone(2025)10.1016/j.bone.2025.117663

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0DataRank · unranked

1 citations

Mengran Yan, Sarah M. Wolff, Joseph D Knue, Hannah M. Smith, Connor P. Dolan +8 more

Single-Cell RNA Sequencing Reveals Extensive Heterogeneity and Unique Gene Trajectories in Non-Transformed and Transformed Human Lung Epithelial Cells: Insights into the Role of LncRNAs in Tumor Heterogeneity

International Journal of Molecular Sciences(2025)10.3390/ijms26041690

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0DataRank · unranked

4 citations

Andrés Chamorro, Minsun Stacey Jeon, James J. Cai, Kenneth S. Ramos, Sokviseth Moeng

Expression of Prooncogenic Nuclear Receptor 4A (NR4A)-Regulated Genes β1-Integrin and G9a Inhibited by Dual NR4A1/2 Ligands

International Journal of Molecular Sciences(2025)10.3390/ijms26083909

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0DataRank · unranked

1 citations

Victoria Gatlin, Shreyan Gupta, Michael L. Salinas, Selim Romero, James J. Cai +3 more

Din Oversees Mesenchymal Stem Cell Homeostasis in Mouse Incisors

Research Square(2025)10.21203/rs.3.rs-6568233/v1

N/A

0DataRank · unranked

0 citations

Changchun Dong, Bikash Lamichhane, Sanjaya Thapa, Yongxu Zhang, Shreyan Gupta +2 more

Exercise decreases the number and modifies the transcriptome of M1 macrophages and CD8+ T cells in non-occluded epicardial adipose tissue of female pigs

American Journal of Physiology-Cell Physiology(2025)10.1152/ajpcell.00135.2025

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0DataRank · unranked

0 citations

Shreyan Gupta, Micah Thomas, James J. Cai, Cristine L. Heaps, Annie E. Newell‐Fugate +1 more

Systematic determination of the mitochondrial proportion in human and mice tissues for single-cell RNA-sequencing data quality control

Bioinformatics(2020)10.1093/bioinformatics/btaa751

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0DataRank · unranked

218 citations

James J. Cai, Daniel Osorio

Pesco-Vegetarian Food Components Promote Colonocyte Ferroptosis in Preclinical Mouse Models and a Randomized Crossover Trial in Healthy Human Adults

Journal of Nutrition(2025)10.1016/j.tjnut.2025.101287

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0DataRank · unranked

0 citations

Michael L. Salinas, D. Mullens, Laurie A. Davidson, Jennifer S. Goldsby, Ivan V. Ivanov +8 more