Stephanie Portillo‐Ledesma

Also affiliated with Simons Foundation, New York University

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 17 papers. Top paper: “Histone H1 loss drives lymphoma by disrupting 3D chromatin architecture”.

Histone H1 loss drives lymphoma by disrupting 3D chromatin architecture

Nature(2020)10.1038/s41586-020-3017-y

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0DataRank · unranked

267 citations

Andreas Kloetgen, Matt Teater, Adewola Osunsade, Jeannie M. Camarillo, Christopher R. Chin +24 more

Chromatin Fiber Folding Represses Transcription and Loop Extrusion in Quiescent Cells

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.24.396713

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0DataRank · unranked

4 citations

Dejun Lin, Stephanie Portillo‐Ledesma, Po‐Yen Lin, Dakota R. Hunt, Cheng-Fu Kao +4 more

Mesoscale Modeling and Single-Nucleosome Tracking Reveal Remodeling of Clutch Folding and Dynamics in Stem Cell Differentiation

Cell Reports(2021)10.1016/j.celrep.2020.108614

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0DataRank · unranked

82 citations

Stephanie Portillo‐Ledesma, Maria Victoria Neguembor, Martina Pesaresi, Walaa Oweis, Talia Miriam Rohrlich +6 more

Biomolecular Modeling and Simulation: A Prospering Multidisciplinary Field

Annual Review of Biophysics(2021)10.1146/annurev-biophys-091720-102019

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0DataRank · unranked

74 citations

Stephanie Portillo‐Ledesma, Christopher G. Myers, Lauren Beljak, Qiuying Chen, Sami Dakhel +11 more

A MULTISCALE VISION-ILLUSTRATIVE APPLICATIONS FROM BIOLOGY TO ENGINEERING

International Journal for Multiscale Computational Engineering(2021)10.1615/intjmultcompeng.2021039845

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0DataRank · unranked

15 citations

Stephanie Portillo‐Ledesma, Mischa Blaszczyk, Luke Dalessandro, Somnath Ghosh, Klaus Hackl +9 more

Brownian dynamics simulations of mesoscale chromatin fibers

Biophysical Journal(2022)10.1016/j.bpj.2022.09.013

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0DataRank · unranked

27 citations

Stephanie Portillo‐Ledesma, Tamar Schlick, Zilong Li

Chromatin transitions triggered by LH density as epigenetic regulators of the genome

Nucleic Acids Research(2022)10.1093/nar/gkac757

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0DataRank · unranked

13 citations

Meghna Wagley, Tamar Schlick, Stephanie Portillo‐Ledesma

Techniques for and challenges in reconstructing 3D genome structures from 2D chromosome conformation capture data

Current Opinion in Cell Biology(2023)10.1016/j.ceb.2023.102209

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0DataRank · unranked

11 citations

Stephanie Portillo‐Ledesma, Tamar Schlick, Zilong Li

Effect of Single-Residue Mutations on CTCF Binding to DNA: Insights from Molecular Dynamics Simulations

International Journal of Molecular Sciences(2023)10.3390/ijms24076395

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0DataRank · unranked

5 citations

Carrie Chen, Stephanie Portillo‐Ledesma, Tamar Schlick, Albert H. Mao

Structural insights into the cooperative nucleosome recognition and chromatin opening by FOXA1 and GATA4

Molecular Cell(2024)10.1016/j.molcel.2024.07.016

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0DataRank · unranked

14 citations

Hanqiao Feng, Furong Huang, Iris Zhu, Stephanie Portillo‐Ledesma, Dan Shi +6 more

Regulation of chromatin architecture by protein binding: insights from molecular modeling

Biophysical Reviews(2024)10.1007/s12551-024-01195-5

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0DataRank · unranked

6 citations

Tamar Schlick, Stephanie Portillo‐Ledesma

Compromised two-start zigzag chromatin folding in immature mouse retina cells driven by irregularly spaced nucleosomes with short DNA linkers

Nucleic Acids Research(2025)10.1093/nar/gkaf457

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0DataRank · unranked

5 citations

Stephanie Portillo‐Ledesma, Evgenya Y. Popova, Nathan Jentink, Matthew T. Swulius, Zilong Li +3 more

Chromatin higher-order folding as influenced by preferred values of linker DNA

Current Opinion in Structural Biology(2025)10.1016/j.sbi.2025.103154

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0DataRank · unranked

6 citations

Stephanie Portillo‐Ledesma, Tamar Schlick, Zilong Li

Incorporating multiscale methylation effects into nucleosome-resolution chromatin models for simulating mesoscale fibers

The Journal of Chemical Physics(2025)10.1063/5.0242199

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0DataRank · unranked

5 citations

Stephanie Portillo‐Ledesma, Moshe Janani, Tamar Schlick, Zilong Li

The influence of 10n and 10n+5 linker lengths on chromatin fiber topologies explored by mesoscale modeling

Biophysical Journal(2025)10.1016/j.bpj.2025.08.030

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0DataRank · unranked

3 citations

Stephanie Portillo‐Ledesma, Moshe Janani, Tamar Schlick, Zilong Li

Molecular dynamics simulations reveal subtle consequences of H3K9 and H3K27 tri-methylation on chromatin constituents

Biophysical Journal(2025)10.1016/j.bpj.2025.08.002

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0DataRank · unranked

1 citations

Zilong Li, Tamar Schlick, Stephanie Portillo‐Ledesma

Compromised 2-start zigzag chromatin folding in immature mouse retina cells driven by irregularly spaced nucleosomes with short DNA linkers

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.16.633430

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0DataRank · unranked

0 citations

Stephanie Portillo‐Ledesma, Evgenya Y. Popova, Nathan Jentink, Matthew T. Swulius, Zilong Li +3 more