Danielle Dionne

Also affiliated with Klarman Cell Observatory

Biochemistry, Genetics and Molecular BiologyImmunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

16.4Author DataRank

Indexed papers

6in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 6 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Single-cell transcriptomic profiling of the aging mouse brain

Nature Neuroscience(2019)10.1038/s41593-019-0491-3

Top 4%

5.6DataRank

Top 4%791 citations

Scott L. Lipnick, Brendan T. Innes, Sean K. Simmons, Xian Adiconis, Danielle Dionne +13 more

Papers

Driven by 57 papers — median percentile 86. Top paper: “Single-cell transcriptomic profiling of the aging mouse brain”.

Single-cell transcriptomic profiling of the aging mouse brain

Nature Neuroscience(2019)10.1038/s41593-019-0491-3

Top 4%

5.6DataRank

Top 4%791 citations

Scott L. Lipnick, Brendan T. Innes, Sean K. Simmons, Xian Adiconis, Danielle Dionne +13 more

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

Nature Medicine(2020)10.1038/s41591-020-0844-1

Top 4%

5.6DataRank

Top 4%819 citations

Caroline B. M. Porter, Orr Ashenberg, Julia Waldman, Eugene Drokhlyansky, Isaac Wakiro +45 more

Multiplexed single-cell transcriptional response profiling to define cancer vulnerabilities and therapeutic mechanism of action

Nature Communications(2020)10.1038/s41467-020-17440-w

N/A

5.2DataRank · unranked

186 citations

Brenton R. Paolella, Allison C. Warren, Kathryn Geiger-Schuller, Tsukasa Shibue, Michael Rothberg +18 more

Blood and immune development in human fetal bone marrow and Down syndrome

Nature(2021)10.1038/s41586-021-03929-x

N/A

3.2DataRank · unranked

160 citations

Simone Webb, Issac Goh, Mariana Quiroga Londoño, Gary Reynolds, Michael Mather +60 more

A single-cell and single-nucleus RNA-seq toolbox for fresh and frozen human tumors

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/761429

N/A

2.5DataRank · unranked

68 citations

Orr Ashenberg, Julia Waldman, Eugene Drokhlyansky, Isaac Wakiro, Indresh Singh +44 more

Stepwise-edited, human melanoma models reveal mutations’ effect on tumor and microenvironment

Science(2022)10.1126/science.abi8175

N/A

1.8DataRank · unranked

70 citations

Elena Torlai Triglia, John Y. H. Kwon, Tommaso Biancalani, Labib R. Zakka, Saurabh Parkar +16 more

A cellular and spatial map of the choroid plexus across brain ventricles and ages

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/627539

Top 12%

1.7DataRank

Top 12%45 citations

Rebecca H. Herbst, Naomi Habib, Danielle Dionne, Cristin McCabe, Jin Cui +11 more

Single-nucleus and spatial transcriptomics of archival pancreatic cancer reveals multi-compartment reprogramming after neoadjuvant treatment

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.25.267336

N/A

1.6DataRank · unranked

35 citations

Karthik A. Jagadeesh, Jimmy A. Guo, Hannah I. Hoffman, Payman Yadollahpour, Rahul Mohan +46 more

A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features

Nature Medicine(2024)10.1038/s41591-024-03215-z

Top 15%

1.3DataRank

Top 15%91 citations

Daniel L. Abravanel, Åsa Segerstolpe, Timothy R. Blosser, Yury Goltsev, Yi Cui +57 more

Single-nucleus cross-tissue molecular reference maps to decipher disease gene function

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.19.452954

Top 16%

1.3DataRank

Top 16%27 citations

Eugene Drokhlyansky, Shankara Anand, Ayshwarya Subramanian, Evgenij Fiskin, Michal Slyper +19 more

Induction of a colitogenic phenotype in Th1-like cells depends on interleukin-23 receptor signaling

Immunity(2022)10.1016/j.immuni.2022.08.007

N/A

1.2DataRank · unranked

49 citations

David DeTomaso, Alexandra Schnell, Youjin Lee, Jackson Nyman, Danielle Dionne +15 more

An Integrative Model of Cellular States, Plasticity, and Genetics for Glioblastoma

Cell(2019)10.1016/j.cell.2019.06.024

N/A

1.2DataRank · unranked

2765 citations

Julie Laffy, Mariella G. Filbin, Toshiro Hara, Marni E. Shore, Gilbert J. Rahme +59 more

Protective role for kidney TREM2 macrophages in obesity- and diabetes-induced kidney injury

Cell Reports(2024)10.1016/j.celrep.2024.114253

N/A

1.2DataRank · unranked

45 citations

Katherine A. Vernon, Yiming Zhou, Jamie L. Marshall, Maria Alimova, Carlos Arevalo +35 more

A single-cell survey of the small intestinal epithelium

Nature(2017)10.1038/nature24489

N/A

1.1DataRank · unranked

1850 citations

Moshe Biton, Noga Rogel, Rebecca H. Herbst, Karthik Shekhar, Indresh Singh +18 more

Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/455451

N/A

1.1DataRank · unranked

19 citations

Moshe Biton, Keri M. Sullivan, Grace Burgin, Daniel B. Graham, Rebecca H. Herbst +24 more

Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis

Cell(2019)10.1016/j.cell.2019.06.029

N/A

1.1DataRank · unranked

1412 citations

Moshe Biton, Keri M. Sullivan, Grace Burgin, Daniel B. Graham, Rebecca H. Herbst +28 more

Decoupling genetics, lineages, and microenvironment in IDH-mutant gliomas by single-cell RNA-seq

Science(2017)10.1126/science.aai8478

N/A

1.0DataRank · unranked

1050 citations

Itay Tirosh, Christine Hebert, Keren Yizhak, Cyril Neftel, Mariella G. Filbin +29 more

Disease-associated astrocytes in Alzheimer’s disease and aging

Nature Neuroscience(2020)10.1038/s41593-020-0624-8

N/A

1.0DataRank · unranked

1000 citations

Cristin McCabe, Sedi Medina, Miriam Varshavsky, Daniel Kitsberg, Raz Dvir-Szternfeld +11 more

A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia

Cell(2019)10.1016/j.cell.2019.04.040

N/A

1.0DataRank · unranked

905 citations

Dariusz Przybylski, Monika S. Kowalczyk, Youmna Kfoury, Nicolas Severe, Karin Gustafsson +16 more

Spatially organized multicellular immune hubs in human colorectal cancer

Cell(2021)10.1016/j.cell.2021.08.003

N/A

1.0DataRank · unranked

787 citations

Matan Hofree, Siranush Sarkizova, Joshua D. Pirl, Vjola Jorgji, Alborz Bejnood +73 more

Single cell RNA sequencing of human microglia uncovers a subset associated with Alzheimer’s disease

Nature Communications(2020)10.1038/s41467-020-19737-2

N/A

0.992DataRank · unranked

743 citations

Vilas Menon, Naomi Habib, Yiyi Ma, Christina J. Yung, Maria Cimpean +26 more

Checkpoint Blockade Immunotherapy Induces Dynamic Changes in PD-1−CD8+ Tumor-Infiltrating T Cells

Immunity(2019)10.1016/j.immuni.2018.11.014

N/A

0.972DataRank · unranked

652 citations

Asaf Madi, Giulia Escobar, Max Klapholz, Jackson Nyman, Elena Christian +9 more

The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation

Nature(2017)10.1038/nature24029

N/A

0.966DataRank · unranked

625 citations

Samantha J. Riesenfeld, Patrick R. Burkett, Raja-Elie E. Abdulnour, Jackson Nyman, Danielle Dionne +18 more

The Human and Mouse Enteric Nervous System at Single-Cell Resolution

Cell(2020)10.1016/j.cell.2020.08.003

N/A

0.948DataRank · unranked

556 citations

Christopher S. Smillie, Nicholas Van Wittenberghe, Maria Ericsson, Gabriel K. Griffin, David S. Fischer +14 more

Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.02.508492

N/A

0.946DataRank · unranked

16 citations

Simon Mages, Johanna Klughammer, Noa Moriel, Shinya Imada, Matan Hofree +22 more

Single-cell RNA-seq reveals cell type–specific molecular and genetic associations to lupus

Science(2022)10.1126/science.abf1970

N/A

0.939DataRank · unranked

522 citations

M. Grace Gordon, Meena Subramaniam, Min Cheol Kim, George C. Hartoularos, Sasha Targ +25 more

The enteric nervous system of the human and mouse colon at a single-cell resolution

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/746743

N/A

0.905DataRank · unranked

24 citations

Christopher S. Smillie, Nicholas Van Wittenberghe, Maria Ericsson, Gabriel K. Griffin, Danielle Dionne +11 more

A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.07.574538

Top 22%

0.898DataRank

Top 22%34 citations

Orr Ashenberg, Natalie B. Collins, Åsa Segerstolpe, Sizun Jiang, Michal Slyper +53 more

A cellular and spatial map of the choroid plexus across brain ventricles and ages

Cell(2021)10.1016/j.cell.2021.04.003

N/A

0.886DataRank · unranked

366 citations

Rebecca H. Herbst, Cristin McCabe, Gilad S. Green, Karol Kaiser, Joshua P. Head +18 more

TIM-3 restrains anti-tumour immunity by regulating inflammasome activation

Nature(2021)10.1038/s41586-021-03626-9

N/A

0.885DataRank · unranked

363 citations

Marcin Tabaka, Markus A. Schramm, Sheng Xiao, Ruihan Tang, Danielle Dionne +5 more

Stem-like intestinal Th17 cells give rise to pathogenic effector T cells during autoimmunity

Cell(2021)10.1016/j.cell.2021.11.018

N/A

0.826DataRank · unranked

246 citations

Linglin Huang, Meromit Singer, Anvita Singaraju, Rocky M. Barilla, Brianna M.L. Regan +11 more

Mouse fetal growth restriction through parental and fetal immune gene variation and intercellular communications cascade

Nature Communications(2022)10.1038/s41467-022-32171-w

N/A

0.813DataRank · unranked

23 citations

Orr Ashenberg, Jack Lee, Samantha J. Riesenfeld, Matan Hofree, Maria Aggelakopoulou +21 more

Single cell census of human kidney organoids shows reproducibility and diminished off-target cells after transplantation

Nature Communications(2019)10.1038/s41467-019-13382-0

N/A

0.808DataRank · unranked

218 citations

Eriene-Heidi Sidhom, Maheswarareddy Emani, Nareh Sahakian, Yiming Zhou, Maria Kost-Alimova +12 more

Skin inflammation driven by differentiation of quiescent tissue-resident ILCs into a spectrum of pathogenic effectors

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/461228

N/A

0.805DataRank · unranked

20 citations

Samantha J. Riesenfeld, Monika S. Kowalczyk, María Carolina Amezcua Vesely, Lina Kroehling, Parastou Yaghoubi +13 more

Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

Nature Communications(2019)10.1038/s41467-019-10756-2

N/A

0.803DataRank · unranked

211 citations

Bo Li, Cristin McCabe, Abigail Knecht, Yiming Yang, Eugene Drokhlyansky +11 more

Skin-resident innate lymphoid cells converge on a pathogenic effector state

Nature(2021)10.1038/s41586-021-03188-w

N/A

0.798DataRank · unranked

204 citations

Samantha J. Riesenfeld, Jan-Christian Hütter, Elena Torlai Triglia, Monika S. Kowalczyk, Roberto R. Ricardo-Gonzalez +29 more

Erratum: The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation

Nature(2017)10.1038/nature24480

N/A

0.792DataRank · unranked

20 citations

Samantha J. Riesenfeld, Patrick R. Burkett, Raja-Elie E. Abdulnour, Jackson Nyman, Danielle Dionne +18 more

Obesity-instructed TREM2 high macrophages identified by comparative analysis of diabetic mouse and human kidney at single cell resolution

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.30.446342

N/A

0.768DataRank · unranked

14 citations

Yiming Zhou, Jamie L. Marshall, Maria Alimova, Fan Zhang, Michal Slyper +23 more

Massively parallel phenotyping of variant impact in cancer with Perturb-seq reveals a shift in the spectrum of cell states induced by somatic mutations

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.16.383307

N/A

0.673DataRank · unranked

12 citations

James T. Neal, Emily Shea, Pratiksha I. Thakore, Livnat Jerby-Arnon, Danielle Dionne +15 more

Heterochronic parabiosis reprograms the mouse brain transcriptome by shifting aging signatures in multiple cell types

Nature Aging(2023)10.1038/s43587-023-00373-6

N/A

0.641DataRank · unranked

71 citations

Kristina M. Holton, Richard M. Giadone, Ceren Ozek, Monika Saxena, Samara Santiago +15 more

A deep lung cell atlas reveals cytokine-mediated lineage switching of a rare cell progenitor of the human airway epithelium

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.28.569028

N/A

0.484DataRank · unranked

11 citations

Isha Monga, Brian Lin, Viral S. Shah, Michal Slyper, Bruno Giotti +18 more

Heterochronic parabiosis reprograms the mouse brain transcriptome by shifting aging signatures in multiple cell types

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.27.477911

N/A

0.381DataRank · unranked

6 citations

Kristina M. Holton, Richard M. Giadone, Ceren Ozek, Monika Saxena, Samara Santiago +14 more

T helper cells modulate intestinal stem cell renewal and differentiation

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/217133

N/A

0.368DataRank · unranked

5 citations

Adam L. Haber, Semir Beyaz, Noga Rogel, Indresh Singh, Karthik Shekhar +26 more

Multiplexed single-cell profiling of post-perturbation transcriptional responses to define cancer vulnerabilities and therapeutic mechanism of action

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/868752

N/A

0.353DataRank · unranked

5 citations

Brenton R. Paolella, Allison C. Warren, Kathryn Geiger-Schuller, Tsukasa Shibue, Michael Rothberg +18 more

RAAS blockade, kidney disease, and expression of ACE2 , the entry receptor for SARS-CoV-2, in kidney epithelial and endothelial cells

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.23.167098

N/A

0.312DataRank · unranked

7 citations

Katherine A. Vernon, Michal Slyper, Julia Waldman, Malte D. Luecken, Kirk Gosik +13 more

Multicellular immune hubs and their organization in MMRd and MMRp colorectal cancer

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.30.426796

N/A

0.297DataRank · unranked

4 citations

Matan Hofree, Jonathan Chen, Siranush Sarkizova, Joshua D. Pirl, Vjola Jorgji +71 more

Decoding the development of the blood and immune systems during human fetal liver haematopoiesis

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/654210

N/A

0.296DataRank · unranked

5 citations

Rachel A. Botting, Emily Stephenson, Kile Green, Laura Jardine, Emily F. Calderbank +54 more

Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/476036

N/A

0.208DataRank · unranked

3 citations

Bo Li, Cristin McCabe, Abigail Knecht, Eugene Drokhlyansky, Nicholas Van Wittenberghe +10 more

Author Correction: Massively parallel phenotyping of coding variants in cancer with Perturb-seq

Nature Biotechnology(2022)10.1038/s41587-022-01495-9

N/A

0.133DataRank · unranked

1 citations

James T. Neal, Emily Shea, Pratiksha I. Thakore, Livnat Jerby-Arnon, Danielle Dionne +17 more

Parental-fetal interplay of immune genes leads to intrauterine growth restriction

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.26.437292

N/A

0.126DataRank · unranked

1 citations

Orr Ashenberg, Jack Lee, Samantha J. Riesenfeld, Matan Hofree, Maria Aggelakopoulou +20 more

Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics

eLife(2025)10.7554/elife.104815

N/A

0.104DataRank · unranked

1 citations

Simon Mages, Johanna Klughammer, Noa Moriel, Shinya Imada, Matan Hofree +22 more

Author Correction: A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features

Nature Medicine(2025)10.1038/s41591-025-03665-z

N/A

0.104DataRank · unranked

1 citations

Daniel L. Abravanel, Åsa Segerstolpe, Timothy R. Blosser, Yury Goltsev, Yi Cui +57 more

A cellular taxonomy of the bone marrow stroma in homeostasis and leukemia demonstrates cancer-crosstalk with stroma to impair normal tissue function

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/556845

N/A

0.104DataRank · unranked

1 citations

Monika S. Kowalczyk, Kfoury Youmna, Nicolas Severe, Mercier Francois, Lee Dongjun +13 more

HTAPP_Dissociation of human primary colorectal cancer resection specimens into single cell suspension for single cell RNA-seq v1

(2019)10.17504/protocols.io.batcieiw

N/A

0DataRank · unranked

0 citations

Matan Hofree, Tabea Moll, SusannahPhillips not provided, Danielle Dionne, Julia Waldman +18 more

Author Correction: Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

Nature Communications(2020)10.1038/s41467-020-19357-w

N/A

0DataRank · unranked

0 citations

Bo Li, Cristin McCabe, Abigail Knecht, Yiming Yang, Eugene Drokhlyansky +11 more

Author response: Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics

(2025)10.7554/elife.104815.3.sa2

N/A

0DataRank · unranked

0 citations

Simon Mages, Johanna Klughammer, Noa Moriel, Shinya Imada, Matan Hofree +26 more

HTAPP_Dissociation of human primary colorectal cancer resection specimens into single cell suspension for single cell RNA-seq v2

(2021)10.17504/protocols.io.busfnwbn

N/A

0DataRank · unranked

0 citations

Matan Hofree, Tabea Moll, SusannahPhillips not provided, Danielle Dionne, Julia Waldman +18 more

Danielle Dionne

Indexed papers

Top data-sharing exemplar

Papers