Allan Haldane

ORCID: 0000-0002-8343-1994

Also affiliated with Institute of Molecular Biology and Biophysics, Temple University

Biochemistry, Genetics and Molecular BiologyImmunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 23 papers. Top paper: “Mechanisms of HIV-1 integrase resistance to dolutegravir and potent inhibition of drug-resistant variants”.

Mechanisms of HIV-1 integrase resistance to dolutegravir and potent inhibition of drug-resistant variants

Science Advances(2023)10.1126/sciadv.adg5953

N/A

0.843DataRank · unranked

38 citations

Dario Oliveira Passos, Zelin Shan, Steven J. Smith, Qinfang Sun, Avik Biswas +14 more

Contingency and Entrenchment of Drug-Resistance Mutations in HIV Viral Proteins

The Journal of Physical Chemistry B(2022)10.1021/acs.jpcb.2c06123

N/A

0.385DataRank · unranked

12 citations

Avik Biswas, Allan Haldane, Ronald M. Levy, Indrani Choudhuri

Evolutionary Sequence and Structural Basis for the Epistatic Origins of Drug Resistance in HIV

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.30.651576

N/A

0.165DataRank · unranked

2 citations

Indrani Choudhuri, Kenneth Huang, Qinfang Sun, Andrej Săli, Ignacia Echeverria +4 more

Unique Features of Different Classes of G-Protein-Coupled Receptors Revealed from Sequence Coevolutionary and Structural Analysis

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.03.446974

N/A

0DataRank · unranked

0 citations

Allan Haldane, Ronald M. Levy, Yinglong Miao, N. Hung

Evolutionary divergence in the conformational landscapes of tyrosine vs serine/threonine kinases

eLife(2022)10.7554/elife.83368

N/A

0DataRank · unranked

35 citations

Abhishek Thakur, Allan Haldane, Ronald M. Levy, Joan Gizzio

Limits to detecting epistasis in the fitness landscape of HIV

PLoS ONE(2022)10.1371/journal.pone.0262314

N/A

0DataRank · unranked

11 citations

Allan Haldane, Ronald M. Levy, Avik Biswas

Mechanisms of HIV-1 Integrase Resistance to Dolutegravir and Potent Inhibition of Drug Resistant Variants

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.04.519057

N/A

0DataRank · unranked

3 citations

Dario Oliveira Passos, Zelin Shan, Steven J. Smith, Qinfang Sun, Avik Biswas +12 more

Kinetic co-evolutionary models predict the temporal emergence of HIV resistance mutations under drug selection pressure

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.30.518575

N/A

0DataRank · unranked

1 citations

Indrani Choudhuri, Eddy Arnold, Dmitry Lyumkis, Allan Haldane, Ronald M. Levy +1 more

Evolutionary sequence and structural basis for the distinct conformational landscapes of Tyr and Ser/Thr kinases

Nature Communications(2024)10.1038/s41467-024-50812-0

N/A

0DataRank · unranked

23 citations

Abhishek Thakur, Allan Haldane, Carol Beth Post, Ronald M. Levy, Joan Gizzio

Kinetic coevolutionary models predict the temporal emergence of HIV-1 resistance mutations under drug selection pressure

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2316662121

N/A

0DataRank · unranked

18 citations

Indrani Choudhuri, Eddy Arnold, Dmitry Lyumkis, Allan Haldane, Ronald M. Levy +1 more

Activation of polycystin-1 signaling by binding of stalk-derived peptide agonists

eLife(2024)10.7554/elife.95992

N/A

0DataRank · unranked

10 citations

Brenda S. Magenheimer, Keya Joshi, Ericka Nevarez-Munoz, Allan Haldane, Robin L. Maser +2 more

Evolutionary sequence and structural basis for the distinct conformational landscapes of Tyr and Ser/Thr kinases

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.08.584161

N/A

0DataRank · unranked

6 citations

Abhishek Thakur, Allan Haldane, Carol Beth Post, Ronald M. Levy, Joan Gizzio

Activation of Polycystin-1 Signaling by Binding of Stalk-derived Peptide Agonists

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.06.574465

N/A

0DataRank · unranked

1 citations

Brenda S. Magenheimer, Keya Joshi, Ericka Nevarez Munoz, Allan Haldane, Robin L. Maser +2 more

Evolutionary sequence and structural basis for the distinct conformational landscapes of Tyr and Ser/Thr kinases

Research square(2024)10.21203/rs.3.rs-4048991/v1

N/A

0DataRank · unranked

1 citations

Joan Gizzio, Abhishek Thakur, Allan Haldane, Ronald M. Levy

Activation of polycystin-1 signaling by binding of stalk-derived peptide agonists

eLife(2024)10.7554/elife.95992.3

N/A

0DataRank · unranked

0 citations

Brenda S. Magenheimer, Keya Joshi, Ericka Nevarez-Munoz, Allan Haldane, Robin L. Maser +2 more

Activation of polycystin-1 signaling by binding of stalk-derived peptide agonists

UNC Libraries(2024)10.17615/jsph-yt82

N/A

0DataRank · unranked

0 citations

Brenda S. Magenheimer, Robin L. Maser, Keya Joshi, Shristi Pawnikar, Allan Haldane +2 more

Phylogenetic corrections and higher-order sequence statistics in protein families: Potts vs multiple sequence alignment transformer machine learning models

Physical Review Research(2025)10.1103/g5cx-1vhj

N/A

0DataRank · unranked

3 citations

Ronald M. Levy, Allan Haldane, Kisan Khatri

Predicting side chain conformations in folded proteins by AlphaFold: Perspective and challenges

Biophysical Journal(2025)10.1016/j.bpj.2025.09.030

N/A

0DataRank · unranked

2 citations

Abhishek Thakur, Kumar Khatri, Allan Haldane, Ronald M. Levy, Gia G. Maisuradze

Using AlphaFold2 to Predict the Conformations of Side Chains in Folded Proteins

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.10.637534

N/A

0DataRank · unranked

1 citations

Abhishek Thakur, Kumar Khatri, Allan Haldane, Ronald M. Levy, Gia G. Maisuradze

Mi3-GPU: MCMC-based inverse Ising inference on GPUs for protein covariation analysis

Computer Physics Communications(2020)10.1016/j.cpc.2020.107312

N/A

0DataRank · unranked

47 citations

Ronald M. Levy, Allan Haldane

De Novo Hydration of Cryo-EM Reconstructions through Molecular Dynamics Simulations of the Excess Chemical Potential

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.23.655847

N/A

0DataRank · unranked

0 citations

Sriram Aiyer, Avik Biswas, Allan Haldane, Sompriya Chatterjee, Nobuyuki Matubayasi +3 more

The generative capacity of probabilistic protein sequence models

Nature Communications(2021)10.1038/s41467-021-26529-9

N/A

0DataRank · unranked

42 citations

Sandro Hauri, Quentin Novinger, Slobodan Vučetić, Ronald M. Levy, Vincenzo Carnevale +2 more

The role of epistasis in determining the fitness landscape of HIV proteins

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.16.448646

N/A

0DataRank · unranked

1 citations

Allan Haldane, Ronald M. Levy, Avik Biswas