Steven L. Salzberg

Also affiliated with Johns Hopkins Medicine

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

63.6Author DataRank

Indexed papers

32in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 32 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Sequence of the Human Genome

Science(2001)10.1126/science.1058040

Top 1%

11.2DataRank

Top 1%13680 citations

Mark D. Adams, Eugene W. Myers, Peter W. Li, Richard J. Mural, Granger G. Sutton +340 more

Papers

Driven by 92 papers — median percentile 72. Top paper: “The Sequence of the Human Genome”.

The Sequence of the Human Genome

Science(2001)10.1126/science.1058040

Top 1%

11.2DataRank

Top 1%13680 citations

Mark D. Adams, Eugene W. Myers, Peter W. Li, Richard J. Mural, Granger G. Sutton +340 more

A Comparison of Whole-Genome Shotgun-Derived Mouse Chromosome 16 and the Human Genome

Science(2002)10.1126/science.1069193

Top 1%

10.9DataRank

Top 1%372 citations

Mark D. Adams, Eugene W. Myers, Hamilton O. Smith, George L. Gabor Miklos, Ron Wides +172 more

The complete sequence of a human genome

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.26.445798

Top 2%

8.2DataRank

Top 2%182 citations

Sergey Koren, Arang Rhie, Allison A. Regier, Andrey V. Bzikadze, Alla Mikheenko +97 more

The complete sequence of a human genome

Science(2022)10.1126/science.abj6987

Top 3%

7.0DataRank

Top 3%3361 citations

Sergey Koren, Arang Rhie, Allison A. Regier, Andrey V. Bzikadze, Alla Mikheenko +94 more

The complete sequence of a human Y chromosome

Nature(2023)10.1038/s41586-023-06457-y

Top 5%

4.1DataRank

Top 5%464 citations

Sergey Nurk, Mark J. P. Chaisson, Savannah J. Hoyt, Dylan J. Taylor, Nicolas Altemose +82 more

Genome Assembly Has a Major Impact on Gene Content: A Comparison of Annotation in Two Bos Taurus Assemblies

PLoS ONE(2011)10.1371/journal.pone.0021400

N/A

3.9DataRank · unranked

109 citations

Alexander Souvorov, Theodore S. Kalbfleisch, Steven L. Salzberg, Liliana Florea

Deep coverage whole genome sequences and plasma lipoprotein(a) in individuals of European and African ancestries

Nature Communications(2018)10.1038/s41467-018-04668-w

N/A

3.7DataRank · unranked

109 citations

Sanni Ruotsalainen, Robert E. Handsaker, Maris Alver, Jonathan M. Bloom, Timothy Poterba +442 more

A Reference Genome Sequence for Giant Sequoia

G3 Genes Genomes Genetics(2020)10.1534/g3.120.401612

Top 7%

3.0DataRank

Top 7%124 citations

Aleksey V. Zimin, Daniela Puiu, Rachael Workman, Monica Britton, Sumaira Zaman +9 more

The status of the human gene catalogue

Nature(2023)10.1038/s41586-023-06490-x

Top 8%

2.9DataRank

Top 8%171 citations

Sílvia Carbonell Sala, Francisco M. De La Vega, Tiago Faial, Adam Frankish, T Gingeras +16 more

Assembly and annotation of an Ashkenazi human reference genome

Genome biology(2020)10.1186/s13059-020-02047-7

Top 10%

2.2DataRank

Top 10%70 citations

Aleksey V. Zimin, Rachel M. Sherman, Daniela Puiu, Justin Wagner, Nathan D. Olson +5 more

High-quality genome and methylomes illustrate features underlying evolutionary success of oaks

Nature Communications(2022)10.1038/s41467-022-29584-y

Top 12%

1.8DataRank

Top 12%81 citations

Shawn Cokus, Sorel Fitz‐Gibbon, Aleksey V. Zimin, Daniela Puiu, Jesse A. Garcia +7 more

Fast gapped-read alignment with Bowtie 2

Nature Methods(2012)10.1038/nmeth.1923

N/A

1.6DataRank · unranked

59681 citations

Steven L. Salzberg, Ben Langmead

HISAT: a fast spliced aligner with low memory requirements

Nature Methods(2015)10.1038/nmeth.3317

N/A

1.5DataRank · unranked

25688 citations

Ben Langmead, Steven L. Salzberg, Daehwan Kim

CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure

Genome biology(2023)10.1186/s13059-023-03088-4

Top 14%

1.5DataRank

Top 14%58 citations

Markus J. Sommer, Beril Erdogdu, Ida Shinder, Ilia Minkin, Kuan-Hao Chao +10 more

FLASH: fast length adjustment of short reads to improve genome assemblies

Bioinformatics(2011)10.1093/bioinformatics/btr507

N/A

1.4DataRank · unranked

15526 citations

Steven L. Salzberg, Tanja Magoč

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

Nature Biotechnology(2019)10.1038/s41587-019-0201-4

N/A

1.4DataRank · unranked

15249 citations

Joseph M. Paggi, Chanhee Park, Christopher Bennett, Steven L. Salzberg, Daehwan Kim

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Nature Protocols(2012)10.1038/nprot.2012.016

N/A

1.4DataRank · unranked

12835 citations

Adam Roberts, Reenal Pattni, Daehwan Kim, Cheryl A. Keller, Harold Pimentel +5 more

Structure-guided isoform identification for the human transcriptome

eLife(2022)10.7554/elife.82556

N/A

1.4DataRank · unranked

50 citations

Sooyoung Cha, Ales Varabyou, Natalia Rincon, Sukhwan Park, Ilia Minkin +4 more

Assembled and annotated 26.5 Gbp coast redwood genome: a resource for estimating evolutionary adaptive potential and investigating hexaploid origin

G3 Genes Genomes Genetics(2021)10.1093/g3journal/jkab380

Top 15%

1.3DataRank

Top 15%59 citations

Aleksey V. Zimin, Sumaira Zaman, Alison Dawn Scott, Bikash Shrestha, Rachael Workman +11 more

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

Nature Protocols(2016)10.1038/nprot.2016.095

N/A

1.3DataRank · unranked

7503 citations

Daehwan Kim, Jeffrey T. Leek, Steven L. Salzberg, Reenal Pattni, Mihaela Pertea

Bracken: estimating species abundance in metagenomics data

PeerJ Computer Science(2017)10.7717/peerj-cs.104

N/A

1.2DataRank · unranked

2213 citations

Florian P. Breitwieser, Peter Thielen, Steven L. Salzberg, Jennifer Lu

The first gapless, reference-quality, fully annotated genome from a Southern Han Chinese individual

G3 Genes Genomes Genetics(2023)10.1093/g3journal/jkac321

Top 19%

1.0DataRank

Top 19%26 citations

Aleksey V. Zimin, Mihaela Pertea, Steven L. Salzberg, Kuan-Hao Chao

Liftoff: accurate mapping of gene annotations

Bioinformatics(2020)10.1093/bioinformatics/btaa1016

N/A

1.0DataRank · unranked

1042 citations

Steven L. Salzberg, Alaina Shumate

The complete sequence of a human Y chromosome

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.01.518724

Top 22%

0.934DataRank

Top 22%42 citations

Sergey Nurk, Savannah J. Hoyt, Dylan J. Taylor, Nicolas Altemose, Paul W. Hook +79 more

A reference-quality, fully annotated genome from a Puerto Rican individual

Genetics(2021)10.1093/genetics/iyab227

Top 22%

0.910DataRank

Top 22%31 citations

Alaina Shumate, Ida Shinder, Jakob Heinz, Daniela Puiu, Mihaela Pertea +2 more

Metagenomic classification with KrakenUniq onlow-memory computers

The Journal of Open Source Software(2022)10.21105/joss.04908

Top 27%

0.751DataRank

Top 27%20 citations

Aleksey V. Zimin, Steven L. Salzberg, Christopher Pockrandt

Automated assembly of high-quality diploid human reference genomes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.06.483034

Top 28%

0.719DataRank

Top 28%22 citations

Giulio Formenti, Arang Rhie, Andrea Guarracino, Chentao Yang, Jonathan M. D. Wood +77 more

A complete diploid human genome benchmark for personalized genomics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.21.677443

Top 32%

0.611DataRank

Top 32%23 citations

Nathan Dwarshuis, Hyun Joo Ji, Arang Rhie, Hailey Loucks, Glennis A. Logsdon +60 more

Assembly and Annotation of an Ashkenazi Human Reference Genome

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.18.997395

Top 33%

0.593DataRank

Top 33%9 citations

Aleksey V. Zimin, Rachel M. Sherman, Daniela Puiu, Justin Wagner, Nathan D. Olson +5 more

The giant sequoia genome and proliferation of disease resistance genes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.17.995944

Top 38%

0.507DataRank

Top 38%8 citations

Aleksey V. Zimin, Daniela Puiu, Rachael Workman, Monica Britton, Sumaira Zaman +9 more

The genome of the American groundhog, Marmota monax

F1000Research(2020)10.12688/f1000research.25970.1

Top 39%

0.487DataRank

Top 39%4 citations

Aleksey V. Zimin, Alaina Shumate, Yuchen Ge, Jiabin Qiu, Manoj Bhaskaran +2 more

Comprehensive analysis of microbial content in whole-genome sequencing samples from The Cancer Genome Atlas project

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.24.595788

Top 41%

0.469DataRank

Top 41%9 citations

Jennifer Lu, Daniela Puiu, Mahler Revsine, Steven L. Salzberg, Yuchen Ge

Novel metagenomics analysis of stony coral tissue loss disease

G3 Genes Genomes Genetics(2024)10.1093/g3journal/jkae137

N/A

0.392DataRank · unranked

8 citations

Jennifer Lu, Lindsay K. Huebner, Steven L. Salzberg, Markus Sommer, Stephanie Rosales +1 more

Translon: a single term for translated regions

Nature Methods(2025)10.1038/s41592-025-02810-3

N/A

0.389DataRank · unranked

11 citations

Jack A. S. Tierney, M. Mar Albà, Dmitry E. Andreev, Julie L. Aspden, John F. Atkins +164 more

A genome sequence for the threatened whitebark pine

G3 Genes Genomes Genetics(2024)10.1093/g3journal/jkae061

Top 48%

0.373DataRank

Top 48%11 citations

Aleksey V. Zimin, Amy Meltzer, Akriti Bhattarai, Maurice Amee, Laura Figueroa‐Corona +9 more

CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.21.521274

Top 48%

0.371DataRank

Top 48%9 citations

Markus J. Sommer, Beril Erdogdu, Ida Shinder, Ilia Minkin, Kuan-Hao Chao +10 more

Metagenomic classification with KrakenUniq on low-memory computers

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.01.494344

Top 49%

0.368DataRank

Top 49%7 citations

Aleksey V. Zimin, Steven L. Salzberg, Christopher Pockrandt

The first gapless, reference-quality, fully annotated genome from a Southern Han Chinese individual

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.08.503226

Top 50%

0.350DataRank

Top 50%6 citations

Aleksey V. Zimin, Mihaela Pertea, Steven L. Salzberg, Kuan-Hao Chao

A reference-quality, fully annotated genome from a Puerto Rican individual

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.10.447952

Top 52%

0.330DataRank

Top 52%8 citations

Alaina Shumate, Ida Shinder, Jakob Heinz, Daniela Puiu, Mihaela Pertea +2 more

Publisher Correction: Deep coverage whole genome sequences and plasma lipoprotein(a) in individuals of European and African ancestries

Nature Communications(2020)10.1038/s41467-020-15236-6

Top 57%

0.275DataRank

Top 57%2 citations

Sanni Ruotsalainen, Robert E. Handsaker, Maris Alver, Jonathan M. Bloom, Timothy Poterba +442 more

Metagenomic next generation sequencing of plasma RNA for diagnosis of unexplained, acute febrile illness in Uganda

PLoS neglected tropical diseases(2024)10.1371/journal.pntd.0012451

N/A

0.269DataRank · unranked

5 citations

Paul W. Blair, Jennifer Lu, Raghavendran Anantharam, Kenneth Kobba, Matthew L. Robinson +9 more

Chromosome-scale assembly of the bread wheat genome, Triticum aestivum , reveals over 5700 new genes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.06.028746

Top 59%

0.256DataRank

Top 59%3 citations

Alaina Shumate, Daniela Puiu, Aleksey V. Zimin, Steven L. Salzberg, Michael Alonge

The 15th Genomic Standards Consortium meeting

Standards in Genomic Sciences(2013)10.4056/sigs.3457

N/A

0.226DataRank · unranked

1 citations

Ilene Karsch-Mizrachi, Peter Sterk, Dawn Field, Lynette Hirschman, Tatiana Tatusova +54 more

Evidence of off-target probe binding in the 10x Genomics Xenium v1 Human Breast Gene Expression Panel compromises accuracy of spatial transcriptomic profiling

10.7554/elife.107070.1

N/A

0.208DataRank · unranked

3 citations

Hyun Joo Ji, Steven L. Salzberg, Jean Fan, Caleb Hallinan

A Genome Sequence for the Threatened Whitebark Pine

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.16.567420

Top 78%

0.104DataRank

Top 78%1 citations

Aleksey V. Zimin, Amy Meltzer, Akriti Bhattarai, Maurice Amee, Laura Figueroa‐Corona +9 more

Releasing the Kraken

Frontiers in Bioinformatics(2021)10.3389/fbinf.2021.808003

N/A

0DataRank · unranked

14 citations

Derrick E. Wood, Steven L. Salzberg

PhyloCSF++: A fast and user-friendly implementation of PhyloCSF with annotation tools

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.10.434297

N/A

0DataRank · unranked

1 citations

Martin Steinegger, Steven L. Salzberg, Christopher Pockrandt

Next-generation sequencing: insights to advance clinical investigations of the microbiome

Journal of Clinical Investigation(2022)10.1172/jci154944

N/A

0DataRank · unranked

418 citations

Jennifer L. Pluznick, Steven L. Salzberg, Cynthia L. Sears, Caroline R. Wensel

Terminating contamination: large-scale search identifies more than 2,000,000 contaminated entries in GenBank

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.26.920173

N/A

0DataRank · unranked

18 citations

Steven L. Salzberg, Martin Steinegger

The SAMBA tool uses long reads to improve the contiguity of genome assemblies

PLoS Computational Biology(2022)10.1371/journal.pcbi.1009860

N/A

0DataRank · unranked

55 citations

Steven L. Salzberg, Aleksey V. Zimin

Rapid detection of inter-clade recombination in SARS-CoV-2 with Bolotie

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.21.300913

N/A

0DataRank · unranked

23 citations

Christopher Pockrandt, Steven L. Salzberg, Mihaela Pertea, Ales Varabyou

Effects of transcriptional noise on estimates of gene and transcript expression in RNA sequencing experiments

Genome Research(2020)10.1101/gr.266213.120

N/A

0DataRank · unranked

49 citations

Steven L. Salzberg, Mihaela Pertea, Ales Varabyou

LiftoffTools: a toolkit for comparing gene annotations mapped between genome assemblies

F1000Research(2022)10.12688/f1000research.124059.1

N/A

0DataRank · unranked

10 citations

Steven L. Salzberg, Alaina Shumate

Microbial Diagnostics for Cancer: A Step Forward but Not Prime Time Yet

Cancer Cell(2020)10.1016/j.ccell.2020.04.010

N/A

0DataRank · unranked

5 citations

Steven L. Salzberg, Cynthia L. Sears

Liftoff: an accurate gene annotation mapping tool

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.24.169680

N/A

0DataRank · unranked

55 citations

Steven L. Salzberg, Alaina Shumate

SkewIT: The Skew Index Test for large-scale GC Skew analysis of bacterial genomes

PLoS Computational Biology(2020)10.1371/journal.pcbi.1008439

N/A

0DataRank · unranked

78 citations

Steven L. Salzberg, Jennifer Lu

Highly accurate isoform identification for the human transcriptome

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.08.495354

N/A

0DataRank · unranked

3 citations

Sooyoung Cha, Ales Varabyou, Natalia Rincon, Sukhwan Park, Ilia Minkin +4 more

Major data analysis errors invalidate cancer microbiome findings

mBio(2023)10.1128/mbio.01607-23

N/A

0DataRank · unranked

205 citations

Yuchen Ge, Jennifer Lu, Daniela Puiu, Amanda Xu, Colin S. Cooper +4 more

Terminating contamination: large-scale search identifies more than 2,000,000 contaminated entries in GenBank

Genome biology(2020)10.1186/s13059-020-02023-1

N/A

0DataRank · unranked

266 citations

Steven L. Salzberg, Martin Steinegger

Ultrafast and accurate 16S rRNA microbial community analysis using Kraken 2

Microbiome(2020)10.1186/s40168-020-00900-2

N/A

0DataRank · unranked

328 citations

Steven L. Salzberg, Jennifer Lu

Investigating open reading frames in known and novel transcripts using ORFanage

Nature Computational Science(2023)10.1038/s43588-023-00496-1

N/A

0DataRank · unranked

34 citations

Beril Erdogdu, Steven L. Salzberg, Mihaela Pertea, Ales Varabyou

The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007981

N/A

0DataRank · unranked

440 citations

Steven L. Salzberg, Aleksey V. Zimin

JASPER: A fast genome polishing tool that improves accuracy of genome assemblies

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011032

N/A

0DataRank · unranked

14 citations

Steven L. Salzberg, Aleksey V. Zimin, Alina Guo

Major data analysis errors invalidate cancer microbiome findings

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.28.550993

N/A

0DataRank · unranked

38 citations

Yuchen Ge, Jennifer Lu, Daniela Puiu, Amanda Xu, Colin S. Cooper +4 more

Investigating Open Reading Frames in Known and Novel Transcripts using ORFanage

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.23.533704

N/A

0DataRank · unranked

3 citations

Beril Erdogdu, Steven L. Salzberg, Mihaela Pertea, Ales Varabyou

Conservation assessment of human splice site annotation based on a 470-genome alignment

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.01.569581

N/A

0DataRank · unranked

3 citations

Steven L. Salzberg, Ilia Minkin

Detecting differential transcript usage in complex diseases with SPIT

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.10.548289

N/A

0DataRank · unranked

1 citations

Ales Varabyou, Stephanie C. Hicks, Steven L. Salzberg, Mihaela Pertea, Beril Erdogdu

The status of the human gene catalogue

arXiv (Cornell University)(2023)10.48550/arxiv.2303.13996

Top 100%

0DataRank

Top 100%0 citations

Sílvia Carbonell Sala, Francisco M. De La Vega, Tiago Faial, Adam Frankish, T Gingeras +16 more

SkewIT: Skew Index Test for detecting mis-assembled bacterial genomes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.27.968214

N/A

0DataRank · unranked

0 citations

Steven L. Salzberg, Jennifer Lu

Splam: a deep-learning-based splice site predictor that improves spliced alignments

Genome biology(2024)10.1186/s13059-024-03379-4

N/A

0DataRank · unranked

20 citations

Alan Mao, Steven L. Salzberg, Mihaela Pertea, Kuan-Hao Chao

The tuatara genome reveals ancient features of amniote evolution

Nature(2020)10.1038/s41586-020-2561-9

N/A

0DataRank · unranked

208 citations

Kim Rutherford, Stefan Prost, Marc Tollis, David J. Winter, Jonathan R. Macey +60 more

LiftoffTools: a toolkit for comparing gene annotations mapped between genome assemblies

F1000Research(2024)10.12688/f1000research.124059.2

N/A

0DataRank · unranked

11 citations

Steven L. Salzberg, Alaina Shumate

cellSTAAR: incorporating single-cell-sequencing-based functional data to boost power in rare variant association testing of noncoding regions

Nature Methods(2025)10.1038/s41592-025-02919-5

N/A

0DataRank · unranked

0 citations

Yi Zhang, Xihao Li, Margaret Sunitha Selvaraj, Zilin Li, Hufeng Zhou +544 more

Upstream open reading frames may contain hundreds of novel human exons

PLoS Computational Biology(2024)10.1371/journal.pcbi.1012543

N/A

0DataRank · unranked

6 citations

Steven L. Salzberg, Hyun Joo Ji

Detecting differential transcript usage in complex diseases with SPIT

Cell Reports Methods(2024)10.1016/j.crmeth.2024.100736

N/A

0DataRank · unranked

5 citations

Ales Varabyou, Stephanie C. Hicks, Steven L. Salzberg, Mihaela Pertea, Beril Erdogdu

Genomic variability in Zika virus in GBS cases in Colombia

PLoS ONE(2024)10.1371/journal.pone.0313545

N/A

0DataRank · unranked

1 citations

Diana López, Andrés Castillo, Erica Aristizábal, Daniela Puiu, Steven L. Salzberg +4 more

Combining DNA and protein alignments to improve genome annotation with LiftOn

Genome Research(2024)10.1101/gr.279620.124

N/A

0DataRank · unranked

20 citations

Jakob Heinz, Celine Hoh, Alan Mao, Alaina Shumate, Mihaela Pertea +2 more

Novel metagenomics analysis of stony coral tissue loss disease

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.02.573916

N/A

0DataRank · unranked

3 citations

Jennifer Lu, Lindsay K. Huebner, Steven L. Salzberg, Markus J. Sommer, Stephanie Rosales +1 more

Upstream open reading frames may contain hundreds of novel human exons

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.22.586333

N/A

0DataRank · unranked

0 citations

Steven L. Salzberg, Hyun Joo Ji

Discovering Intron Gain Events in Humans through Large-Scale Evolutionary Comparisons

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.02.592247

N/A

0DataRank · unranked

0 citations

Steven L. Salzberg, Celine Hoh

TD2: finding protein coding regions in transcripts

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.13.648579

N/A

0DataRank · unranked

5 citations

Hyun Joo Ji, Brian J. Haas, Steven L. Salzberg, Markus J. Sommer, Alan Mao

Evidence of off-target probe binding affecting 10x Genomics Xenium gene panels compromise accuracy of spatial transcriptomic profiling

eLife(2025)10.7554/elife.107070

N/A

0DataRank · unranked

2 citations

Hyun Joo Ji, Edmund Tsou, Steven L. Salzberg, Jean Fan, Caleb Hallinan

Conservation assessment of human splice site annotation based on a 470-genome alignment

Nucleic Acids Research(2025)10.1093/nar/gkaf184

N/A

0DataRank · unranked

0 citations

Steven L. Salzberg, Ilia Minkin

Discovering Intron Gain Events in Humans Through Large-Scale Evolutionary Comparisons

Genome Biology and Evolution(2025)10.1093/gbe/evaf091

N/A

0DataRank · unranked

0 citations

Steven L. Salzberg, Celine Hoh

Comprehensive Transcriptome Annotation of Thousands of HIV-1 Genomes

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.24.675449

Top 100%

0DataRank

Top 100%0 citations

Mykhaylo Artamonov, Sophia Cheng, Diane L. Bolton, Steven L. Salzberg, Mihaela Pertea +1 more

PSAURON: a tool for assessing protein annotation across a broad range of species

NAR Genomics and Bioinformatics(2024)10.1093/nargab/lqae189

N/A

0DataRank · unranked

25 citations

Aleksey V. Zimin, Steven L. Salzberg, Markus J. Sommer

Balrog: A universal protein model for prokaryotic gene prediction

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.06.285304

N/A

0DataRank · unranked

0 citations

Steven L. Salzberg, Markus Sommer

Rapid detection of inter-clade recombination in SARS-CoV-2 with Bolotie

Genetics(2021)10.1093/genetics/iyab074

N/A

0DataRank · unranked

72 citations

Christopher Pockrandt, Steven L. Salzberg, Mihaela Pertea, Ales Varabyou

Guillain-Barré Syndrome Outbreak in Peru 2019 Associated With Campylobacter jejuni Infection

Neurology Neuroimmunology & Neuroinflammation(2021)10.1212/nxi.0000000000000952

N/A

0DataRank · unranked

37 citations

Sonja E. Leonhard, Susan K. Halstead, Mireya A. Cuba, Carlos C. Castañeda, Jose A. Dioses +18 more

Balrog: A universal protein model for prokaryotic gene prediction

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008727

N/A

0DataRank · unranked

32 citations

Steven L. Salzberg, Markus J. Sommer

Ultrafast and accurate 16S microbial community analysis using Kraken 2

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.27.012047

N/A

0DataRank · unranked

11 citations

Steven L. Salzberg, Jennifer Lu

PhyloCSF++: a fast and user-friendly implementation of PhyloCSF with annotation tools

Bioinformatics(2021)10.1093/bioinformatics/btab756

N/A

0DataRank · unranked

15 citations

Martin Steinegger, Steven L. Salzberg, Christopher Pockrandt

Steven L. Salzberg

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