Garry P. Nolan

Also affiliated with Stanford University

Biochemistry, Genetics and Molecular BiologyImmunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

6.0Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Human Cell Atlas White Paper

arXiv (Cornell University)(2018)10.17863/cam.40032

Top 10%

2.2DataRank

Top 10%41 citations

Sarah A. Teichmann, Orit Rozenblatt‐Rosen, Michael J. T. Stubbington, Kristin G. Ardlie, Ido Amit +76 more

Papers

Driven by 109 papers — median percentile 78. Top paper: “Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma”.

Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma

Cell(2020)10.1016/j.cell.2020.05.039

N/A

10.2DataRank · unranked

1137 citations

Adam J. Rubin, Kim Thrane, Sizun Jiang, David L. Reynolds, Robin M. Meyers +16 more

Strategies for Accurate Cell Type Identification in CODEX Multiplexed Imaging Data

Frontiers in Immunology(2021)10.3389/fimmu.2021.727626

N/A

4.5DataRank · unranked

158 citations

Yuqi Tan, Garry P. Nolan, Yury Goltsev, John W. Hickey

Immune cell topography predicts response to PD-1 blockade in cutaneous T cell lymphoma

Nature Communications(2021)10.1038/s41467-021-26974-6

N/A

4.0DataRank · unranked

227 citations

Magdalena Matusiak, Belén Rivero‐Gutiérrez, Salil S. Bhate, Graham L. Barlow, Sizun Jiang +13 more

Highly multiplexed tissue imaging using repeated oligonucleotide exchange reaction

European Journal of Immunology(2021)10.1002/eji.202048891

N/A

2.8DataRank · unranked

108 citations

Salil S. Bhate, John W. Hickey, Sarah Black, Graham L. Barlow, Gustavo Vazquez +6 more

The Human Cell Atlas White Paper

arXiv (Cornell University)(2018)10.17863/cam.40032

Top 10%

2.2DataRank

Top 10%41 citations

Sarah A. Teichmann, Orit Rozenblatt‐Rosen, Michael J. T. Stubbington, Kristin G. Ardlie, Ido Amit +76 more

MetaCyto: A Tool for Automated Meta-analysis of Mass and Flow Cytometry Data

Cell Reports(2018)10.1016/j.celrep.2018.07.003

N/A

2.2DataRank · unranked

57 citations

Chethan Jujjavarapu, Jacob J. Hughey, Sandra Andorf, Hao-Chih Lee, Pier Federico Gherardini +12 more

BCG vaccination stimulates integrated organ immunity by feedback of the adaptive immune response to imprint prolonged innate antiviral resistance

Nature Immunology(2023)10.1038/s41590-023-01700-0

N/A

1.8DataRank · unranked

92 citations

Katharine Floyd, Shengyang Wu, Zhuoqing Fang, Tze-Kai Tan, Heather M. Froggatt +17 more

A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features

Nature Medicine(2024)10.1038/s41591-024-03215-z

Top 15%

1.3DataRank

Top 15%91 citations

Daniel L. Abravanel, Åsa Segerstolpe, Timothy R. Blosser, Yury Goltsev, Yi Cui +57 more

Coordinated Cellular Neighborhoods Orchestrate Antitumoral Immunity at the Colorectal Cancer Invasive Front

Cell(2020)10.1016/j.cell.2020.07.005

N/A

1.0DataRank · unranked

979 citations

Salil S. Bhate, Graham L. Barlow, Darci J. Phillips, Luca Noti, Inti Zlobec +9 more

A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.07.574538

Top 22%

0.898DataRank

Top 22%34 citations

Orr Ashenberg, Natalie B. Collins, Åsa Segerstolpe, Sizun Jiang, Michal Slyper +53 more

The commitment of the human cell atlas to humanity

Nature Communications(2024)10.1038/s41467-024-54306-x

Top 24%

0.847DataRank

Top 24%20 citations

Kristin G. Ardlie, Fabiana Arzuaga, Gordon A. Awandare, Samirkumar B. Amin, Alexander Bernier +38 more

The Atacama skeleton

Genome Research(2018)10.1101/gr.237834.118

N/A

0.795DataRank · unranked

6 citations

Garry P. Nolan, Atul Janardhan Butte

Author response: The Human Cell Atlas

(2017)10.7554/elife.27041.011

Top 29%

0.700DataRank

Top 29%14 citations

Sarah A. Teichmann, Matthew E. Hurles, Ido Amit, Kerstin Lindblad‐Toh, Bernd Bodenmiller +60 more

Aldehyde dehydrogenase 3A1 deficiency leads to mitochondrial dysfunction and impacts salivary gland stem cell phenotype

PNAS Nexus(2022)10.1093/pnasnexus/pgac056

N/A

0.512DataRank · unranked

11 citations

Hongbin Cao, Julie Saiki, Dadi Jiang, Aaron Mattingly, Dhanya K. Nambiar +20 more

Performance of BioFire array or QuickVue influenza A + B test versus a validation qPCR assay for detection of influenza A during a volunteer A/California/2009/H1N1 challenge study

Virology Journal(2021)10.1186/s12985-021-01516-0

N/A

0.364DataRank · unranked

5 citations

Han Chen, Maria Apkarian, Melton B. Affrime, Bonnie Bock, Kenneth H. Kim +4 more

A Foundation Model for Spatial Proteomics

arXiv (Cornell University)(2025)10.48550/arxiv.2506.03373

N/A

0.292DataRank · unranked

6 citations

Yuzhou Chang, Huaying Qiu, Yao Yu Yeo, Guillaume Jaume, Yuchen Wang +55 more

Voices in methods development

Nature Methods(2019)10.1038/s41592-019-0585-6

N/A

0.269DataRank · unranked

5 citations

Rosalind Mott Firenze, Clifford Brangwynne, Ibrahim I. Cissé, Oliver Fiehn, Petra Fromme +44 more

Meta-analysis of Cytometry Data Reveals Racial Differences in Immune Cells

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/130948

N/A

0.241DataRank · unranked

4 citations

Chethan Jujjavarapu, Jacob J. Hughey, Sandra Andorf, Hao-Chih Lee, Pier Federico Gherardini +13 more

Alterations of the composition and spatial organization of the microenvironment following non-dysplastic Barrett’s esophagus through progression to cancer

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.09.657642

N/A

0.208DataRank · unranked

3 citations

John W. Hickey, Adam M. Passman, Emanuela Carlotti, Shruthi Devkumar, Yannick Derwa +18 more

Author Correction: A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features

Nature Medicine(2025)10.1038/s41591-025-03665-z

N/A

0.104DataRank · unranked

1 citations

Daniel L. Abravanel, Åsa Segerstolpe, Timothy R. Blosser, Yury Goltsev, Yi Cui +57 more

SARS-CoV-2 infects human pancreatic β cells and elicits β cell impairment

Cell Metabolism(2021)10.1016/j.cmet.2021.05.013

N/A

0DataRank · unranked

370 citations

Peter V. Lidsky, Yinghong Xiao, Ivan T. Lee, Ran Cheng, Tsuguhisa Nakayama +16 more

Highly Multiplexed Phenotyping of Immunoregulatory Proteins in the Tumor Microenvironment by CODEX Tissue Imaging

Frontiers in Immunology(2021)10.3389/fimmu.2021.687673

N/A

0DataRank · unranked

111 citations

Christian M. Schürch, Michael S. Khodadoust, Youn H. Kim, Garry P. Nolan, Sizun Jiang +1 more

Tissue schematics map the specialization of immune tissue motifs and their appropriation by tumors

Cell Systems(2021)10.1016/j.cels.2021.09.012

N/A

0DataRank · unranked

98 citations

Graham L. Barlow, Christian M. Schürch, Garry P. Nolan, Salil S. Bhate

Subcellular localization of biomolecules and drug distribution by high-definition ion beam imaging

Nature Communications(2021)10.1038/s41467-021-24822-1

N/A

0DataRank · unranked

71 citations

Sizun Jiang, Yun Bai, Bokai Zhu, Graham L. Barlow, Salil S. Bhate +8 more

Adjacent Cell Marker Lateral Spillover Compensation and Reinforcement for Multiplexed Images

Frontiers in Immunology(2021)10.3389/fimmu.2021.652631

N/A

0DataRank · unranked

63 citations

Bokai Zhu, Xavier Rovira‐Clavé, Han Chen, Maxim Markovic, Chi Ngai Chan +7 more

Human influenza virus challenge identifies cellular correlates of protection for oral vaccination

Cell Host & Microbe(2021)10.1016/j.chom.2021.10.009

N/A

0DataRank · unranked

36 citations

Han Chen, Zainab Rahil, Neda Hajiakhoond Bidoki, Sizun Jiang, Zach B. Bjornson +15 more

Diminished cytokine-induced Jak/STAT signaling is associated with rheumatoid arthritis and disease activity

PLoS ONE(2021)10.1371/journal.pone.0244187

N/A

0DataRank · unranked

32 citations

Rachael E. Hawtin, Dongmei Sun, Brent Louie, Erik Evensen, Barbara B. Mittleman +28 more

Determinants of SARS-CoV-2 entry and replication in airway mucosal tissue and susceptibility in smokers

Cell Reports Medicine(2021)10.1016/j.xcrm.2021.100421

N/A

0DataRank · unranked

29 citations

Ivan T. Lee, Sizun Jiang, Matthias S. Matter, Carol H. Yan, Jonathan B. Overdevest +38 more

Spatial mapping of protein composition and tissue organization: a primer for multiplexed antibody-based imaging

Nature Methods(2021)10.1038/s41592-021-01316-y

N/A

0DataRank · unranked

22 citations

Elizabeth K. Neumann, Andrea J. Radtke, Jeannie M. Camarillo, Rebecca T. Beuschel, Alexandre Albanese +19 more

Nanoscopic subcellular imaging enabled by ion beam tomography

Nature Communications(2021)10.1038/s41467-020-20753-5

N/A

0DataRank · unranked

17 citations

Guojun Han, Shambavi Ganesh, Shih-Yu Chen, Xavier Rovira‐Clavé, Stefan Harmsen +6 more

Multicellular modules as clinical diagnostic and therapeutic targets

Trends in cancer(2021)10.1016/j.trecan.2021.11.004

N/A

0DataRank · unranked

17 citations

Garry P. Nolan, John W. Hickey, Marc-A. Baertsch

Rhesus Macaque CODEX Multiplexed Immunohistochemistry Panel for Studying Immune Responses During Ebola Infection

Frontiers in Immunology(2021)10.3389/fimmu.2021.729845

N/A

0DataRank · unranked

13 citations

Nilanjan Mukherjee, Richard S. Bennett, Han Chen, James Logue, Bonnie Dighero-Kemp +19 more

Annotation of Spatially Resolved Single-cell Data with STELLAR

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.24.469947

N/A

0DataRank · unranked

21 citations

Kaidi Cao, John W. Hickey, Yuqi Tan, Michael P. Snyder, Garry P. Nolan +2 more

High Resolution Single Cell Maps Reveals Distinct Cell Organization and Function Across Different Regions of the Human Intestine

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.25.469203

N/A

0DataRank · unranked

17 citations

Winston R. Becker, Stephanie Nevins, Aaron M. Horning, Almudena Espín Pérez, Roxanne Chiu +20 more

Integrated plasma proteomic and single-cell immune signaling network signatures demarcate mild, moderate, and severe COVID-19

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.09.430269

N/A

0DataRank · unranked

14 citations

Julien Hédou, Joshua Gillard, Han Chen, Eileen S. Tsai, Laura S. Peterson +33 more

Immune cell topography predicts response to PD-1 blockade in cutaneous T cell lymphoma

Research Square(2021)10.21203/rs.3.rs-122285/v1

N/A

0DataRank · unranked

6 citations

Darci J. Phillips, Magdalena Matusiak, Belén Gutiérrez‐Gutiérrez, Salil S. Bhate, Graham L. Barlow +13 more

Robust Single-cell Matching and Multi-modal Analysis Using Shared and Distinct Features Reveals Orchestrated Immune Responses

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.03.471185

N/A

0DataRank · unranked

5 citations

Shuxiao Chen, Yunhao Bai, Han Chen, Nilanjan Mukherjee, Gustavo Vazquez +9 more

A tissue atlas of ulcerative colitis to guide TNF inhibitor therapy

Research Square(2021)10.21203/rs.3.rs-167888/v1

N/A

0DataRank · unranked

1 citations

Derek Holman, Utkarsh Tandon, Salil S. Bhate, Sunil Bodapati, Graham Barlow +12 more

Aldehyde dehydrogenase 3A1 deficiency leads to mitochondrial dysfunction and impacts salivary gland stem cell self-renewal, differentiation and survival

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.25.461994

N/A

0DataRank · unranked

0 citations

Hongbin Cao, Julie Saiki, Dadi Jiang, Aaron Mattingly, Dhanya K. Nambiar +20 more

SARS-CoV-2 replication in airway epithelia requires motile cilia and microvillar reprogramming

Cell(2022)10.1016/j.cell.2022.11.030

N/A

0DataRank · unranked

212 citations

Peter V. Lidsky, Yinghong Xiao, Ran Cheng, Ivan T. Lee, Tsuguhisa Nakayama +17 more

A Comprehensive Atlas of Immunological Differences Between Humans, Mice, and Non-Human Primates

Frontiers in Immunology(2022)10.3389/fimmu.2022.867015

N/A

0DataRank · unranked

195 citations

Gabriela K. Fragiadakis, Matthew H. Spitzer, Han Chen, Deepthi Madhireddy, Kevin Hu +4 more

CellSeg: a robust, pre-trained nucleus segmentation and pixel quantification software for highly multiplexed fluorescence images

BMC Bioinformatics(2022)10.1186/s12859-022-04570-9

N/A

0DataRank · unranked

118 citations

Jacob S. Bedia, Salil S. Bhate, Graham L. Barlow, Darci J. Phillips, Wendy J. Fantl +3 more

Combined protein and nucleic acid imaging reveals virus-dependent B cell and macrophage immunosuppression of tissue microenvironments

Immunity(2022)10.1016/j.immuni.2022.03.020

N/A

0DataRank · unranked

92 citations

Chi Ngai Chan, Xavier Rovira‐Clavé, Han Chen, Yunhao Bai, Bokai Zhu +27 more

Highly multiplexed spatial profiling with CODEX: bioinformatic analysis and application in human disease

Seminars in Immunopathology(2022)10.1007/s00281-022-00974-0

N/A

0DataRank · unranked

57 citations

Garry P. Nolan, Guolan Lu, Wilson Kuswanto

Spatial epitope barcoding reveals clonal tumor patch behaviors

Cancer Cell(2022)10.1016/j.ccell.2022.09.014

N/A

0DataRank · unranked

39 citations

Alexandros P. Drainas, Sizun Jiang, Yunhao Bai, Maya Baron, Bokai Zhu +15 more

New Views of Old Proteins: Clarifying the Enigmatic Proteome

Molecular & Cellular Proteomics(2022)10.1016/j.mcpro.2022.100254

N/A

0DataRank · unranked

36 citations

Thomas P. Conrads, Richard R. Drake, Amy E. Herr, Ravi Iyengar, Ryan T. Kelly +15 more

A real-time GPU-accelerated parallelized image processor for large-scale multiplexed fluorescence microscopy data

Frontiers in Immunology(2022)10.3389/fimmu.2022.981825

N/A

0DataRank · unranked

16 citations

Marc A. Baertsch, John W. Hickey, Yury Goltsev, Andrew J. Rech, Lucas Mani +6 more

Variation of Immune Cell Responses in Humans Reveals Sex-Specific Coordinated Signaling Across Cell Types

Frontiers in Immunology(2022)10.3389/fimmu.2022.867016

N/A

0DataRank · unranked

7 citations

Zachary B. Bjornson-Hooper, Deepthi Madhireddy, Karen Sachs, Han Chen, David R. McIlwain +4 more

A single cell spatial temporal atlas of skeletal muscle reveals cellular neighborhoods that orchestrate regeneration and become disrupted in aging

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.10.494732

N/A

0DataRank · unranked

27 citations

Colin Holbrook, James N. Hamilton, Jasmin Garoussian, Mohsen Afshar, Shiqi Su +7 more

A spatial map of human macrophage niches links tissue location with function

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.18.504434

N/A

0DataRank · unranked

11 citations

John W. Hickey, Bogdan Luca, Guolan Lu, Łukasz Kidziński, Shirley Shu +10 more

Immunotherapy of glioblastoma explants induces interferon-γ responses and spatial immune cell rearrangements in tumor center, but not periphery

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.19.474897

N/A

0DataRank · unranked

8 citations

Carl Zinner, Ewelina M. Bartoszek, Wandrille Duchemin, Anna T. Wachnowicz, Sabrina A. Hogan +16 more

Identification of cell types in multiplexed in situ images by combining protein expression and spatial information using CELESTA reveals novel spatial biology

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.02.478888

N/A

0DataRank · unranked

5 citations

Irene Li, Nathan E. Reticker-Flynn, Zinaida Good, Serena Chang, Nikolay Samusik +12 more

Spatial omics representation and functional tissue module inference using graph Fourier transform

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.10.519929

N/A

0DataRank · unranked

4 citations

Jixin Liu, Anjun Ma, Sizun Jiang, Jordan E. Krull, Yao Yu Yeo +10 more

Integration of spatial and single-cell data across modalities with weakly linked features

Nature Biotechnology(2023)10.1038/s41587-023-01935-0

N/A

0DataRank · unranked

104 citations

Bokai Zhu, Sijia Huang, John W. Hickey, Kevin Lin, Michael P. Snyder +5 more

Glucose dissociates DDX21 dimers to regulate mRNA splicing and tissue differentiation

Cell(2023)10.1016/j.cell.2022.12.004

N/A

0DataRank · unranked

72 citations

Douglas F. Porter, Vanessa Lopez-Pajares, Zurab Siprashvili, Robin M. Meyers, Yunhao Bai +19 more

Organ Mapping Antibody Panels: a community resource for standardized multiplexed tissue imaging

Nature Methods(2023)10.1038/s41592-023-01846-7

N/A

0DataRank · unranked

45 citations

Diane C. Saunders, Elizabeth McDonough, John W. Hickey, Christopher Werlein, Christine Surrette +33 more

A tissue atlas of ulcerative colitis revealing evidence of sex-dependent differences in disease-driving inflammatory cell types and resistance to TNF inhibitor therapy

Science Advances(2023)10.1126/sciadv.add1166

N/A

0DataRank · unranked

42 citations

Derek Holman, Anav Sood, Utkarsh Tandon, Salil S. Bhate, Sunil Bodapati +16 more

T cell-mediated curation and restructuring of tumor tissue coordinates an effective immune response

Cell Reports(2023)10.1016/j.celrep.2023.113494

N/A

0DataRank · unranked

32 citations

Maximillian Haist, Nina B. Horowitz, Chiara Caraccio, Yuqi Tan, Andrew J. Rech +11 more

Physioxia improves the selectivity of hematopoietic stem cell expansion cultures

Blood Advances(2023)10.1182/bloodadvances.2023009668

N/A

0DataRank · unranked

30 citations

Iwo Kucinski, Yan Yi Chan, Tze-Kai Tan, Hwei Minn Khoo, David Kealy +12 more

Expanded vacuum-stable gels for multiplexed high-resolution spatial histopathology

Nature Communications(2023)10.1038/s41467-023-39616-w

N/A

0DataRank · unranked

26 citations

Bokai Zhu, John-Paul Oliveria, Bryan J. Cannon, Dorien Feyaerts, Marc Bossé +15 more

Longitudinal clinical phenotyping of post COVID condition in Mexican adults recovering from severe COVID-19: a prospective cohort study

Frontiers in Medicine(2023)10.3389/fmed.2023.1236702

N/A

0DataRank · unranked

18 citations

Joshua Gillard, Sergio Fragoso-Saavedra, Dorien Feyaerts, León Islas-Weinstein, Angel A. Gallegos-Guzmán +18 more

tidytof: a user-friendly framework for scalable and reproducible high-dimensional cytometry data analysis

Bioinformatics Advances(2023)10.1093/bioadv/vbad071

N/A

0DataRank · unranked

15 citations

Abhishek Koladiya, Yu‐Chen Lo, Garry P. Nolan, Kara L. Davis, Timothy Keyes

A spatial map of human macrophage niches reveals context-dependent macrophage functions in colon and breast cancer.

Research Square(2023)10.21203/rs.3.rs-2393443/v1

N/A

0DataRank · unranked

22 citations

John W. Hickey, Bogdan Luca, Guolan Lu, Łukasz Kidziński, Shirley Zhu +10 more

The Extra-Islet Pancreas Supports Autoimmunity in Human Type 1 Diabetes

medRxiv(2023)10.1101/2023.03.15.23287145

N/A

0DataRank · unranked

5 citations

Christian M. Schürch, Salil S. Bhate, Darci J. Phillips, Arabella Young, S DONG +10 more

Integrated Organ Immunity: Antigen-specific CD4-T cell-derived IFN-γ induced by BCG imprints prolonged lung innate resistance against respiratory viruses

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.31.551354

N/A

0DataRank · unranked

5 citations

Katharine Floyd, Shengyang Wu, Zhuoqing Fang, Tze-Kai Tan, Chunfeng Li +11 more

Integrating Multiplexed Imaging and Multiscale Modeling Identifies Tumor Phenotype Transformation as a Critical Component of Therapeutic T Cell Efficacy

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.06.570168

N/A

0DataRank · unranked

1 citations

Eran Agmon, Nina B. Horowitz, Matthew Lamore, John B. Sunwoo, Markus W. Covert +2 more

Data from Genomic and Proteomic Analysis Reveals a Threshold Level of MYC Required for Tumor Maintenance

(2023)10.1158/0008-5472.c.6497661

N/A

0DataRank · unranked

0 citations

Andrew J. Gentles, Sailaja Elchuri, Debashis Sahoo, Yoav Soen, Orr Sharpe +9 more

Spatially Segregated Macrophage Populations Predict Distinct Outcomes in Colon Cancer

Cancer Discovery(2024)10.1158/2159-8290.cd-23-1300

N/A

0DataRank · unranked

148 citations

John W. Hickey, David G.P. van IJzendoorn, Guolan Lu, Łukasz Kidziński, Shirley Zhu +13 more

MAPS: pathologist-level cell type annotation from tissue images through machine learning

Nature Communications(2024)10.1038/s41467-023-44188-w

N/A

0DataRank · unranked

50 citations

Yunhao Bai, Huaying Qiu, Shulin Mao, Jason Yeung, Yao Yu Yeo +10 more

Graph Fourier transform for spatial omics representation and analyses of complex organs

Nature Communications(2024)10.1038/s41467-024-51590-5

N/A

0DataRank · unranked

29 citations

Jixin Liu, Yi Jiang, Anjun Ma, Yao Yu Yeo, Qi Guo +11 more

Integrating multiplexed imaging and multiscale modeling identifies tumor phenotype conversion as a critical component of therapeutic T cell efficacy

Cell Systems(2024)10.1016/j.cels.2024.03.004

N/A

0DataRank · unranked

25 citations

Eran Agmon, Nina B. Horowitz, Tze-Kai Tan, Matthew Lamore, John B. Sunwoo +3 more

Automated spatial omics landscape analysis approach reveals novel tissue architectures in ulcerative colitis

Scientific Reports(2024)10.1038/s41598-024-68397-5

N/A

0DataRank · unranked

2 citations

Samuel J. S. Rubin, Mariusz Ferenc, Elizabeth A. Holman, Alexander N. Koron, Robel Daniel +5 more

The extra-islet pancreas supports autoimmunity in human type 1 diabetes

eLife(2024)10.7554/elife.100535

N/A

0DataRank · unranked

6 citations

Christian M. Schürch, Salil S. Bhate, Darci J. Phillips, Arabella Young, Shen Dong +10 more

Graph Fourier transform for spatial omics representation and analyses of complex organs

Research Square(2024)10.21203/rs.3.rs-3952048/v1

N/A

0DataRank · unranked

4 citations

Jixin Liu, Yi Jiang, Anjun Ma, Yao Yu Yeo, Qi Guo +11 more

A Spatial Multi-Modal Dissection of Host-Microbiome Interactions within the Colitis Tissue Microenvironment

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.04.583400

N/A

0DataRank · unranked

4 citations

Yunhao Bai, Yao Yu Yeo, Xiaowei Lu, Xavier Rovira‐Clavé, Han Chen +7 more

Epstein-Barr Virus Orchestrates Spatial Reorganization and Immunomodulation within the Classic Hodgkin Lymphoma Tumor Microenvironment

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.05.583586

N/A

0DataRank · unranked

3 citations

Huaying Qiu, Yunhao Bai, Bokai Zhu, Yuzhou Chang, Jason Yeung +31 more

Automated Spatial Omics Landscape Analysis Approach Reveals Novel Tissue Architectures in Ulcerative Colitis

Research Square(2024)10.21203/rs.3.rs-3965505/v1

N/A

0DataRank · unranked

1 citations

Samuel J. S. Rubin, Mariusz Ferenc, Elizabeth A. Holman, Alexander N. Koron, Robel Daniel +5 more

The Extra-Islet Pancreas Supports Autoimmunity in Human Type 1 Diabetes

eLife(2024)10.7554/elife.100535.1

N/A

0DataRank · unranked

1 citations

CM Schürch, SS Bhate, Darci J. Phillips, Arabella Young, S DONG +10 more

Author response: The Extra-Islet Pancreas Supports Autoimmunity in Human Type 1 Diabetes

(2024)10.7554/elife.100535.1.sa0

N/A

0DataRank · unranked

0 citations

CM Schürch, SS Bhate, Darci J. Phillips, Arabella Young, S DONG +10 more

BCG vaccination stimulates integrated organ immunity by feedback of the adaptive immune response to imprint prolonged innate antiviral resistance

UNC Libraries(2024)10.17615/m8pm-zz94

N/A

0DataRank · unranked

0 citations

Sarah R. Leist, Garry P. Nolan, Anna Pavenko, Audrey Lee, Yan Liang +17 more

Multi-scaled transcriptomics of chronically inflamed nasal epithelium reveals immune-epithelial dynamics and tissue remodeling in nasal polyp formation

Immunity(2025)10.1016/j.immuni.2025.08.009

N/A

0DataRank · unranked

15 citations

Tsuguhisa Nakayama, Bokai Zhu, Ivan T. Lee, Jason Yeung, Yao Yu Yeo +31 more

SPACEc: a streamlined, interactive Python workflow for multiplexed image processing and analysis

Nature Communications(2025)10.1038/s41467-025-65658-3

N/A

0DataRank · unranked

12 citations

Tim Kempchen, Martin Becker, Maximilian Haist, Dorien Feyaerts, Jiaqi Liu +9 more

High-throughput multiplexed serology via the mass-spectrometric analysis of isotopically barcoded beads

Nature Biomedical Engineering(2025)10.1038/s41551-025-01349-0

N/A

0DataRank · unranked

8 citations

David R. McIlwain, Alec E. Dallas, Theresa P. Chu, Antonio Delgado‐González, Maya Baron +24 more

The extra-islet pancreas supports autoimmunity in human type 1 diabetes

eLife(2025)10.7554/elife.100535.3

N/A

0DataRank · unranked

8 citations

Christian M. Schürch, Salil S. Bhate, Darci J. Phillips, Arabella Young, Shen Dong +10 more

Concerted changes in Epithelium and Stroma: a multi-scale, multi-omics analysis of progression from Barrett’s Esophagus to adenocarcinoma

Developmental Cell(2025)10.1016/j.devcel.2025.06.034

N/A

0DataRank · unranked

8 citations

David L. Gibbs, Philippe Gascard, Joanna Bons, John W. Hickey, Deng Pan +37 more

Autoimmune origin for immune checkpoint inhibitor-diabetes revealed by deep immune phenotyping of the pancreas

Journal for ImmunoTherapy of Cancer(2025)10.1136/jitc-2025-011818

N/A

0DataRank · unranked

3 citations

Arabella Young, Graham L. Barlow, Jennifer Smith, Irina Kusmartseva, Shen Dong +15 more

Comparative Evaluation of Antibody-Oligonucleotide Conjugation Strategies for Multiplexed Imaging Applications

Laboratory Investigation(2025)10.1016/j.labinv.2025.104262

N/A

0DataRank · unranked

1 citations

Josie van de Klashorst, Shelby Cherkas, Sara Ancel, Tim Noah Kempchen, Gustavo Vazquez +5 more

MONTAGE: A Computation Framework to Identify Spatially Resolved Functional Enrichment Gradients in the Tissue Microenvironment via Spatial Communities

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.30.651486

N/A

0DataRank · unranked

1 citations

Zinaida Good, Marc A. Baertsch, Guolan Lu, John W. Hickey, Rachel Hildebrand +8 more

Annotation-free discovery of disease-relevant cells in single-cell datasets

Science Advances(2025)10.1126/sciadv.adv5019

N/A

0DataRank · unranked

0 citations

Timothy Keyes, Jolanda Sarno, Jeremy P D'Silva, Pablo Domizi, Maxim Zaslavsky +7 more

Comparative single-cell immune responses in peripheral blood and lymph node of immunized SARS-CoV-2 challenged infant rhesus macaques

Frontiers in Immunology(2025)10.3389/fimmu.2025.1599408

N/A

0DataRank · unranked

0 citations

Cameron Meikle, Emma C. Milligan, Han Chen, Nilanjan Mukherjee, Zach B. Bjornson +8 more

Enabling Technologies for Personalized and Precision Medicine

Trends in biotechnology(2020)10.1016/j.tibtech.2019.12.021

N/A

0DataRank · unranked

494 citations

Stephen R. Quake, Edward R.B. McCabe, Wee Joo Chng, Edward Kai‐Hua Chow, Xianting Ding +11 more

ACE2 localizes to the respiratory cilia and is not increased by ACE inhibitors or ARBs

Nature Communications(2020)10.1038/s41467-020-19145-6

N/A

0DataRank · unranked

259 citations

Tsuguhisa Nakayama, Chien-Ting Wu, Yury Goltsev, Sizun Jiang, Phillip A. Gall +34 more

Multi-omic single-cell snapshots reveal multiple independent trajectories to drug tolerance in a melanoma cell line

Nature Communications(2020)10.1038/s41467-020-15956-9

N/A

0DataRank · unranked

105 citations

Melissa E. Ko, Hanjun Cheng, Ronghui Zhu, Min Xue, Jessica K. Wang +18 more

Integration of mechanistic immunological knowledge into a machine learning pipeline improves predictions

Nature Machine Intelligence(2020)10.1038/s42256-020-00232-8

N/A

0DataRank · unranked

84 citations

Amy S. Tsai, Natalie Stanley, Martin Becker, Mohammad Sajjad Ghaemi, David R. McIlwain +26 more

Functional comparison of PBMCs isolated by Cell Preparation Tubes (CPT) vs. Lymphoprep Tubes

BMC Immunology(2020)10.1186/s12865-020-00345-0

N/A

0DataRank · unranked

56 citations

Christian M. Schürch, Kevin Noble, Kenneth Kim, Peter O. Krutzik, Erika O’Donnell +4 more

Landscape of coordinated immune responses to H1N1 challenge in humans

Journal of Clinical Investigation(2020)10.1172/jci137265

N/A

0DataRank · unranked

53 citations

Rebecca Leylek, Christian M. Schürch, Han Chen, Zach Bjornson-Hooper, Shannon Christensen +18 more

A Cancer Biologist's Primer on Machine Learning Applications in High‐Dimensional Cytometry

Cytometry Part A(2020)10.1002/cyto.a.24158

N/A

0DataRank · unranked

49 citations

Pablo Domizi, Yu‐Chen Lo, Garry P. Nolan, Kara L. Davis, Timothy Keyes

Ultra-high throughput single-cell analysis of proteins and RNAs by split-pool synthesis

Communications Biology(2020)10.1038/s42003-020-0896-2

N/A

0DataRank · unranked

21 citations

Felice-Alessio Bava, Mary Shen, Carolina Dallett, Sri Paladugu, Nikolay Samusik +15 more

Deep profiling of apoptotic pathways with mass cytometry identifies a synergistic drug combination for killing myeloma cells

Cell Death and Differentiation(2020)10.1038/s41418-020-0498-z

N/A

0DataRank · unranked

42 citations

Jianan Gong, David Segal, Tania Tan, Cassandra J. Vandenberg, Pasquale L. Fedele +10 more

Profiling myelodysplastic syndromes by mass cytometry demonstrates abnormal progenitor cell phenotype and differentiation

Cytometry Part B Clinical Cytometry(2020)10.1002/cyto.b.21860

N/A

0DataRank · unranked

35 citations

Rachel Finck, Nikolay Samusik, Kunju Sridhar, Wendy J. Fantl, Peter L. Greenberg +2 more

Isotopically Encoded Nanotags for Multiplexed Ion Beam Imaging

Advanced Materials Technologies(2020)10.1002/admt.202000098

N/A

0DataRank · unranked

3 citations

Ahmet F. Coskun, Shambavi Ganesh, Garry P. Nolan, Sanjiv S. Gambhir, Stefan Harmsen

Robust ACE2 protein expression localizes to the motile cilia of the respiratory tract epithelia and is not increased by ACE inhibitors or angiotensin receptor blockers

medRxiv(2020)10.1101/2020.05.08.20092866

N/A

0DataRank · unranked

37 citations

Tsuguhisa Nakayama, Chien-Ting Wu, Yury Goltsev, Sizun Jiang, Phillip A. Gall +31 more

Immune cell topography predicts response to PD-1 blockade in cutaneous T cell lymphoma

medRxiv(2020)10.1101/2020.12.06.20244913

N/A

0DataRank · unranked

19 citations

Magdalena Matusiak, Belén Rivero‐Gutiérrez, Salil S. Bhate, Graham L. Barlow, Sizun Jiang +13 more

Single-cell profiling of Ebola virus infection in vivo reveals viral and host transcriptional dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.12.148957

N/A

0DataRank · unranked

5 citations

Aaron E. Lin, James Logue, Travis K. Hughes, Nadine M. Khoury, Siddharth S. Raju +21 more

Functional comparison of PBMCs isolated by Cell Preparation Tubes (CPT) vs. Lymphoprep Tubes

Research Square(2020)10.21203/rs.2.21477/v2

N/A

0DataRank · unranked

2 citations

Christian M. Schürch, Kevin Noble, Kenneth Kim, Peter O. Krutzik, Erika O’Donnell +4 more

Functional comaparison of PBMCs isolated by Cell Preparation Tubes (CPT) vs Lymphoprep Tubes

Research Square(2020)10.21203/rs.2.21477/v1

N/A

0DataRank · unranked

0 citations

Christian M. Schürch, Kevin Noble, Kenneth Kim, Peter O. Krutzik, Erika O’Donnell +4 more

Performance of BioFire Array or QuickVue Influenza A+B Test versus a validation qPCR assay for detection of influenza A during a volunteer A/California/2009/H1N1 challenge study

Research Square (Research Square)(2020)10.21203/rs.3.rs-22980/v1

N/A

0DataRank · unranked

0 citations

Han Chen, Maria Apkarian, Melton B. Affrime, Bonnie Bock, Kenneth H. Kim +4 more

Expression of specific inflammasome gene modules stratifies older individuals into two extreme clinical and immunological states

UNC Libraries(2020)10.17615/hwxa-sr80

N/A

0DataRank · unranked

0 citations

David Furman, Lydia Lartigue, Matthew H. Spitzer, Gabriela K. Fragiadakis, Jean‐François Moreau +15 more

CODEX multiplexed tissue imaging with DNA-conjugated antibodies

Nature Protocols(2021)10.1038/s41596-021-00556-8

N/A

0DataRank · unranked

677 citations

Darci J. Phillips, John W. Hickey, Julia Kennedy‐Darling, Vishal G. Venkataraaman, Nikolay Samusik +4 more

Garry P. Nolan

Indexed papers

Top data-sharing exemplar

Papers