Qian Cong

Also affiliated with Shanghai Ocean University, The University of Texas Southwestern Medical Center

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.3Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2

PLoS Computational Biology(2024)10.1371/journal.pcbi.1011586

Top 26%

0.763DataRank

Top 26%24 citations

Jing Zhang, Kirill E. Medvedev, Lisa N. Kinch, Qian Cong, Nick V. Grishin +1 more

Papers

Driven by 46 papers — median percentile 58. Top paper: “ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2”.

ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2

PLoS Computational Biology(2024)10.1371/journal.pcbi.1011586

Top 26%

0.763DataRank

Top 26%24 citations

Jing Zhang, Kirill E. Medvedev, Lisa N. Kinch, Qian Cong, Nick V. Grishin +1 more

Structure classification of the proteins from Salmonella enterica pangenome revealed novel potential pathogenicity islands

Scientific Reports(2024)10.1038/s41598-024-60991-x

Top 42%

0.455DataRank

Top 42%12 citations

Jing Zhang, R. Dustin Schaeffer, Lisa N. Kinch, Qian Cong, Nick V. Grishin +1 more

Case Studies of Orphan Domain Reclassification in ECOD by Expert Curation

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.26840

Top 78%

0.104DataRank

Top 78%1 citations

R. Dustin Schaeffer, Qian Cong, Nick V. Grishin, Jimin Pei

Genomics Reveals the Origins of Historical Specimens

Molecular Biology and Evolution(2021)10.1093/molbev/msab013

N/A

0DataRank · unranked

36 citations

Jinhui Shen, Jing Zhang, Wenlin Li, Lisa N. Kinch, John V. Calhoun +3 more

A covariation analysis reveals elements of selectivity in quorum sensing systems

eLife(2021)10.7554/elife.69169

N/A

0DataRank · unranked

16 citations

Qian Cong, Amy L. Schaefer, Emily Kenna MacLeod, Angelina Zimenko, David Baker +2 more

Influence of the large‐Z effect during contact between butterfly sister species

Ecology and Evolution(2021)10.1002/ece3.7785

N/A

0DataRank · unranked

6 citations

Qian Cong, Nick V. Grishin, Erik D. Nelson

Structures of core eukaryotic protein complexes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.30.462231

N/A

0DataRank · unranked

15 citations

Jimin Pei, Minkyung Baek, Aditya Krishnakumar, Ivan Anishchenko, Sergey Ovchinnikov +22 more

A covariation analysis reveals elements of selectivity in quorum sensing systems

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.25.437039

N/A

0DataRank · unranked

1 citations

Qian Cong, Schaefer Al, EK MacLeod, Angelina Zimenko, David Baker +2 more

Genomics‐based higher classification of the species‐rich hairstreaks (Lepidoptera: Lycaenidae: Eumaeini)

Systematic Entomology(2022)10.1111/syen.12541

N/A

0DataRank · unranked

17 citations

Qian Cong, Jing Zhang, Jinhui Shen, Robert C. Busby, Christophe Faynel +6 more

Impact of Asp/Glu‐ADP‐ribosylation on protein‐protein interaction and protein function

PROTEOMICS(2022)10.1002/pmic.202200083

N/A

0DataRank · unranked

8 citations

Jing Zhang, Xudong Wang, Chiho Kim, Yonghao Yu, Qian Cong +1 more

Erythrina stem borer moth in California – New taxonomic status and implications for control of this emerging pest

Journal of Applied Entomology(2022)10.1111/jen.13082

N/A

0DataRank · unranked

1 citations

Jing Zhang, Qian Cong, Leina Song, Nick V. Grishin, Andrei Sourakov

DPAM: A Domain Parser for AlphaFold Models

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.22.509116

N/A

0DataRank · unranked

6 citations

R. Dustin Schaeffer, Jesse Durham, Qian Cong, Nick V. Grishin, Jing Zhang

Co-Component Signal Transduction Systems: fast-evolving virulence regulation cassettes discovered in enteric bacteria

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.08.487670

N/A

0DataRank · unranked

0 citations

Qian Cong, Jananee Jaishankar, Kim Orth, Lisa N. Kinch

A tissue injury repair pathway distinct but parallel to host pathogen defense

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.18.509515

N/A

0DataRank · unranked

0 citations

Yun Ha Hur, Xin Cai, Qian Cong, Yihao Yang, Chiwei Xu +15 more

Genomic analysis reveals a new genus of Firetip skippers (Lepidoptera: Hesperiidae: Pyrrhopyginae)

PubMed(2022)10.5281/zenodo.7246139

N/A

0DataRank · unranked

0 citations

Jinhui Shen, Qian Cong, Geoff Martin, Nick V. Grishin, Jing Zhang

Genomics reveals a new genus and species from a single female specimen (Lepidoptera: Hesperiidae: Hesperiinae: Hesperiini: Moncina)

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.7399446

N/A

0DataRank · unranked

0 citations

Jing Zhang, Qian Cong, Nick V. Grishin, Ernst Brockmann

Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle

Cell(2023)10.1016/j.cell.2023.08.017

N/A

0DataRank · unranked

109 citations

Larry A. Gallagher, Pia A. Andrade, Andi Liu, Ian R. Humphreys, Serdar Turkarslan +11 more

A tissue injury sensing and repair pathway distinct from host pathogen defense

Cell(2023)10.1016/j.cell.2023.03.031

N/A

0DataRank · unranked

102 citations

Yun Ha Hur, Xin Cai, Qian Cong, Yihao Yang, Chiwei Xu +16 more

Classification of domains in predicted structures of the human proteome

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2214069120

N/A

0DataRank · unranked

44 citations

Jing Zhang, Lisa N. Kinch, Jimin Pei, Qian Cong, Nick V. Grishin +1 more

Insights into virulence: structure classification of the Vibrio parahaemolyticus RIMD mobilome

mSystems(2023)10.1128/msystems.00796-23

N/A

0DataRank · unranked

7 citations

R. Dustin Schaeffer, Jing Zhang, Qian Cong, Kim Orth, Nick V. Grishin +1 more

Additional taxonomic refinements suggested by genomic analysis of butterflies.

PubMed(2023)10.5281/zenodo.7604053

N/A

0DataRank · unranked

4 citations

Qian Cong, Jinhui Shen, Leina Song, Paul A. Opler, Nick V. Grishin +1 more

Resolving inconsistencies between Plötz’s descriptions and presumed type specimens of some Hesperiidae (Lepidoptera)

Deutsche Entomologische Zeitschrift(2023)10.3897/dez.70.98280

N/A

0DataRank · unranked

2 citations

Qian Cong, Leina Song, Jinhui Shen, Théo Léger, Gerardo Lamas +3 more

Genetic manipulation of candidate phyla radiation bacteria provides functional insights into microbial dark matter

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.02.539146

N/A

0DataRank · unranked

1 citations

Larry A. Gallagher, Pia A. Andrade, Andi Liu, Ian R. Humphreys, Serdar Turkarslan +11 more

Bridging the Gap between Sequence and Structure Classifications of Proteins with AlphaFold Models

Journal of Molecular Biology(2024)10.1016/j.jmb.2024.168764

N/A

0DataRank · unranked

14 citations

Antonina Andreeva, Sara Chuguransky, Beatriz Lázaro Pinto, Typhaine Paysan‐Lafosse, R. Dustin Schaeffer +4 more

Hedgehog Signaling Controls Chondrogenesis and Ectopic Bone Formation via the Yap-Ihh Axis

Biomolecules(2024)10.3390/biom14030347

N/A

0DataRank · unranked

8 citations

Yingzi Yang, Qian Cong

Genetic and Microbial Analysis of Invasiveness for Escherichia coli Strains Associated With Inflammatory Bowel Disease

Cellular and Molecular Gastroenterology and Hepatology(2024)10.1016/j.jcmgh.2024.101451

N/A

0DataRank · unranked

4 citations

Jing Zhang, Lisa N. Kinch, Jinhui Shen, Sydney Field, Shahanshah Khan +7 more

DPAM-AI: a domain parser for AlphaFold models powered by artificial intelligence

Bioinformatics(2024)10.1093/bioinformatics/btae740

N/A

0DataRank · unranked

2 citations

Jing Zhang, R. Dustin Schaeffer, Qian Cong, Jesse Durham

Range‐wide population genomic structure of the Karner blue butterfly, Plebejus ( Lycaeides ) samuelis

Ecology and Evolution(2024)10.1002/ece3.70044

N/A

0DataRank · unranked

2 citations

Aaron W. Aunins, Timothy King, Qian Cong, Jinhui Shen, Leina Song +6 more

Assessing predictions on fitness effects of missense variants in HMBS in CAGI6

Human Genetics(2024)10.1007/s00439-024-02680-3

N/A

0DataRank · unranked

2 citations

Lisa N. Kinch, Panagiotis Katsonis, Olivier Lichtarge, Milind Jagota, Yun S. Song +26 more

Computing the Human Interactome

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.01.615885

N/A

0DataRank · unranked

30 citations

Ian R. Humphreys, Jimin Pei, Jinuk Kim, Chulwon Choi, Rongqing Yuan +7 more

Orthogonalized human protease control of secreted signals

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.18.576308

N/A

0DataRank · unranked

8 citations

Connor C. Call, Lucas E. Sant’Anna, Alexander E. Vlahos, Jimin Pei, Qian Cong +2 more

Essential and virulence-related protein interactions of pathogens revealed through deep learning

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.12.589144

N/A

0DataRank · unranked

2 citations

Jing Zhang, Minkyung Baek, Yaxi Wang, Aditya Krishnakumar, Jimin Pei +10 more

Structure classification of the proteins from Salmonella enterica pangenome revealed novel potential pathogenicity islands

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.30.577995

N/A

0DataRank · unranked

0 citations

Jing Zhang, R. Dustin Schaeffer, Lisa N. Kinch, Qian Cong, Nick V. Grishin +1 more

Genetic and microbial analysis of invasiveness for Escherichia coli strains associated with inflammatory bowel disease

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.23.613251

N/A

0DataRank · unranked

0 citations

Jing Zhang, Lisa N. Kinch, Jinhui Shen, Sydney Field, Jan‐Michael A. Klapproth +6 more

Assessment of Nucleic Acid Structure Prediction in CASP16

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.70072

N/A

0DataRank · unranked

21 citations

Alissa M. Hummer, Shujun He, Rongqing Yuan, Jing Zhang, Thomas G. Karagianes +4 more

Assessment of Protein Complex Predictions in CASP16 : Are We Making Progress?

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.70068

N/A

0DataRank · unranked

8 citations

Rongqing Yuan, Andriy Kryshtafovych, Jimin Pei, Rachael C. Kretsch, R. Dustin Schaeffer +5 more

NUDT5 regulates purine metabolism and thiopurine sensitivity by interacting with PPAT

Science(2025)10.1126/science.adx9717

N/A

0DataRank · unranked

6 citations

Phong Nguyen, Varun Sondhi, Run-Wen Yao, Zhifang Lu, Tao Dai +22 more

Orthogonalized human protease control of secreted signals

Nature Chemical Biology(2025)10.1038/s41589-024-01831-x

N/A

0DataRank · unranked

8 citations

Connor C. Call, Lucas E. Sant’Anna, Alexander E. Vlahos, Jimin Pei, Qian Cong +2 more

A structural atlas of death domain fold proteins reveals their versatile roles in biology and function

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2426986122

N/A

0DataRank · unranked

7 citations

Ankita T. Kandalkar, Julian F. Ehrmann, Alex Tong, Jing Zhang, Qian Cong +2 more

Refinement and curation of homologous groups facilitated by structure prediction

Protein Science(2025)10.1002/pro.70074

N/A

0DataRank · unranked

0 citations

Jimin Pei, Jing Zhang, Qian Cong, Nick V. Grishin, R. Dustin Schaeffer

Exploring the Terra incognita of AI ‐based domain classifications

Protein Science(2025)10.1002/pro.70392

N/A

0DataRank · unranked

0 citations

Antonina Andreeva, Tiago Grego, Sara Chuguransky, Beatriz Lázaro, Noemí Flores +6 more

Using evolutionary context to classify difficult protein folds

PLoS Computational Biology(2025)10.1371/journal.pcbi.1013773

N/A

0DataRank · unranked

0 citations

R. Dustin Schaeffer, Qian Cong, Nick V. Grishin, Jimin Pei

The meadow jumping mouse genome and transcriptome suggest mechanisms of hibernation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.02.365791

N/A

0DataRank · unranked

2 citations

Ethan A. Brem, Jing Zhang, Jessica Alföldi, Jeremy Johnson, Elinor K. Karlsson +4 more

Modeling the structure-conditioned sequence landscape for large-scale protein design with TriFlow

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.11.30.691458

N/A

0DataRank · unranked

0 citations

Rongqing Yuan, Qian Cong, Jian Zhou, Harish Srinivasan

Influence of the large–Z effect during contact between butterfly sister species

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.04.134494

N/A

0DataRank · unranked

0 citations

Qian Cong, Nick V. Grishin, Erik D. Nelson

Accurate prediction of protein structures and interactions using a three-track neural network

Science(2021)10.1126/science.abj8754

N/A

0DataRank · unranked

5780 citations

Frank DiMaio, Ivan Anishchenko, Justas Dauparas, Sergey Ovchinnikov, Gyu Rie Lee +27 more

Qian Cong

Indexed papers

Top data-sharing exemplar

Papers