Robert Clarke

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 31 papers. Top paper: “Identification of twenty alternatively spliced estrogen receptor alpha mRNAs in breast cancer cell lines and tumors using splice targeted primer approach”.

Identification of twenty alternatively spliced estrogen receptor alpha mRNAs in breast cancer cell lines and tumors using splice targeted primer approach

The Journal of Steroid Biochemistry and Molecular Biology(2000)10.1016/s0960-0760(00)00033-9

N/A

3.8DataRank · unranked

80 citations

Sailaja Koduri, Shubha Chatra, Robert Clarke, Indra Poola

Dyslipidemia, inflammation, calcification, and adiposity in aortic stenosis: a genome-wide study

European Heart Journal(2023)10.1093/eurheartj/ehad142

N/A

2.9DataRank · unranked

113 citations

Christian Dina, Aeron Small, Christian M. Shaffer, Rebecca T. Levinson, Anna Helgadóttir +52 more

Comparative assessment and novel strategy on methods for imputing proteomics data

Scientific Reports(2022)10.1038/s41598-022-04938-0

N/A

0.533DataRank · unranked

34 citations

Yi-Tan Chang, Chiung-Ting Wu, Sarah J. Parker, Georgia Saylor, Yizhi Wang +6 more

IntAPT: integrated assembly of phenotype-specific transcripts from multiple RNA-seq profiles

Bioinformatics(2020)10.1093/bioinformatics/btaa852

N/A

0DataRank · unranked

1 citations

Andrew F. Neuwald, Xiao Wang, Tian‐Li Wang, Leena Hilakivi‐Clarke, Robert Clarke +2 more

Author Correction: BICORN: An R package for integrative inference of de novo cis-regulatory modules

Scientific Reports(2020)10.1038/s41598-020-74149-y

N/A

0DataRank · unranked

0 citations

Jinghua Gu, Andrew F. Neuwald, Leena Hilakivi‐Clarke, Robert Clarke, Jianhua Xuan +1 more

Common variants at 30 loci contribute to polygenic dyslipidemia

UNC Libraries(2020)10.17615/wktm-vc19

N/A

0DataRank · unranked

0 citations

Pilar Galán, Serkalem Demissie, Eric E. Schadt, Aarti Surti, Luigi Ferrucci +27 more

VAV3 mediates resistance to breast cancer endocrine therapy

UNC Libraries(2020)10.17615/39pm-cr73

N/A

0DataRank · unranked

0 citations

Olle Stål, Miguel Gil‐Gil, Laia Gómez‐Baldó, Xosé R. Bustelo, Xavier Barril +40 more

Data-driven detection of subtype-specific differentially expressed genes

Scientific Reports(2021)10.1038/s41598-020-79704-1

N/A

0DataRank · unranked

26 citations

Yingzhou Lu, Chiung-Ting Wu, Robert Clarke, Guoqiang Yu, Jennifer E. Van Eyk +3 more

swCAM: estimation of subtype-specific expressions in individual samples with unsupervised sample-wise deconvolution

Bioinformatics(2021)10.1093/bioinformatics/btab839

N/A

0DataRank · unranked

14 citations

Chiung-Ting Wu, Chia-Hsiang Lin, Rujia Dai, Chunyu Liu, Robert Clarke +5 more

Identifying intracellular signaling modules and exploring pathways associated with breast cancer recurrence

Scientific Reports(2021)10.1038/s41598-020-79603-5

N/A

0DataRank · unranked

13 citations

Jinghua Gu, Andrew F. Neuwald, Leena Hilakivi‐Clarke, Robert Clarke, Jianhua Xuan +1 more

ChIP-BIT2: a software tool to detect weak binding events using a Bayesian integration approach

BMC Bioinformatics(2021)10.1186/s12859-021-04108-5

N/A

0DataRank · unranked

1 citations

Xu Shi, Andrew F. Neuwald, Leena Hilakivi‐Clarke, Robert Clarke, Jianhua Xuan +1 more

A Bayesian approach for accurate de novo transcriptome assembly

Scientific Reports(2021)10.1038/s41598-021-97015-x

N/A

0DataRank · unranked

2 citations

Xiao Wang, Andrew F. Neuwald, Leena Halakivi-Clarke, Robert Clarke, Jianhua Xuan +1 more

Comparative Assessment and Novel Strategy on Methods for Imputing Proteomics Data

Research Square(2021)10.21203/rs.3.rs-841815/v1

N/A

0DataRank · unranked

6 citations

Yi-Tan Chang, Chiung-Ting Wu, Sarah J. Parker, Georgia Saylor, Yizhi Wang +6 more

Comparative Assessment and Outlook on Methods for Imputing Proteomics Data

Research Square(2021)10.21203/rs.3.rs-298864/v1

N/A

0DataRank · unranked

1 citations

Yi-Tan Chang, Chiung-Ting Wu, Sarah J. Parker, Georgia Saylor, Yizhi Wang +6 more

Determining molecular archetype composition and expression from bulk tissues with unsupervised deconvolution

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.12.452047

N/A

0DataRank · unranked

1 citations

Lulu Chen, David M. Herrington, Minjie Shen, Guoqiang Yu, Robert Clarke +3 more

Radiogenomic signatures reveal multiscale intratumour heterogeneity associated with biological functions and survival in breast cancer

Nature Communications(2020)10.1038/s41467-020-18703-2

N/A

0DataRank · unranked

124 citations

Pingping Xia, Robert Clarke, Yue Wang, Lihua Li, Ming Fan

COT: an efficient and accurate method for detecting marker genes among many subtypes

Bioinformatics Advances(2022)10.1093/bioadv/vbac037

N/A

0DataRank · unranked

25 citations

Chiung-Ting Wu, Sarah J. Parker, Zuolin Cheng, Georgia Saylor, Jennifer E. Van Eyk +4 more

AMPK Signaling Regulates Mitophagy and Mitochondrial ATP Production in Human Trophoblast Cell Line BeWo

Frontiers in Bioscience-Landmark(2022)10.31083/j.fbl2704118

N/A

0DataRank · unranked

15 citations

Yun Chen, Robert Clarke, Emmanuel O. Akala, Peixin Yang, Bin He +2 more

Cosbin: cosine score-based iterative normalization of biologically diverse samples

Bioinformatics Advances(2022)10.1093/bioadv/vbac076

N/A

0DataRank · unranked

6 citations

Minjie Shen, Dongping Du, Zuolin Cheng, Sarah J. Parker, Yingzhou Lu +5 more

BICORN: An R package for integrative inference of de novo cis-regulatory modules

Scientific Reports(2020)10.1038/s41598-020-63043-2

N/A

0DataRank · unranked

6 citations

Jinghua Gu, Andrew F. Neuwald, Leena Hilakivi‐Clarke, Robert Clarke, Jianhua Xuan +1 more

ABDS: tool suite for analyzing biologically diverse samples

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.05.547797

N/A

0DataRank · unranked

3 citations

Saurabh Bhardwaj, Sarah J. Parker, Zuolin Cheng, Zhen Zhang, Yingzhou Lu +6 more

Iron Oxide Nanoparticles Inhibit Tumor Progression and Suppress Lung Metastases in Mouse Models of Breast Cancer

ACS Nano(2024)10.1021/acsnano.3c12064

N/A

0DataRank · unranked

32 citations

Lü Jin, Chun-Ting Yang, S. B. Healy, Xin Guo, Suqi Ke +7 more

DDN3.0: determining significant rewiring of biological network structure with differential dependency networks

Bioinformatics(2024)10.1093/bioinformatics/btae376

N/A

0DataRank · unranked

12 citations

Yingzhou Lu, Yizhi Wang, Bai Zhang, Zhen Zhang, Guoqiang Yu +5 more

Embracing the informative missingness and silent gene in analyzing biologically diverse samples

Scientific Reports(2024)10.1038/s41598-024-78076-0

N/A

0DataRank · unranked

5 citations

Saurabh Bhardwaj, Yingzhou Lu, Yizhi Wang, Sarah J. Parker, Zhen Zhang +5 more

CAM3.0: determining cell type composition and expression from bulk tissues with fully unsupervised deconvolution

Bioinformatics(2024)10.1093/bioinformatics/btae107

N/A

0DataRank · unranked

3 citations

Dongping Du, Lulu Chen, Rujia Dai, Chunyu Liu, Guoqiang Yu +7 more

iDDN: determining trans-omics network structure and rewiring with integrative differential dependency networks

Bioinformatics Advances(2024)10.1093/bioadv/vbaf086

N/A

0DataRank · unranked

2 citations

Yi Fu, Yingzhou Lu, Zhen Zhang, Robert Clarke, Sarah J. Parker +4 more

ABDS: a bioinformatics tool suite for analyzing biologically diverse samples

Research Square(2024)10.21203/rs.3.rs-4419408/v1

N/A

0DataRank · unranked

0 citations

Saurabh Bhardwaj, Yingzhou Lu, Yizhi Wang, Sarah J. Parker, Zhen Zhang +6 more

Pyruvate kinase M2 activation reprograms mitochondria in CD8 T cells, enhancing effector functions and efficacy of anti-PD1 therapy

Cell Metabolism(2025)10.1016/j.cmet.2025.03.003

N/A

0DataRank · unranked

35 citations

Jignesh Soni, Jin Lu, Anil Kumar Yadav, Shivani Bansal, Tian Mi +6 more

Molecular mechanisms underlying TXNIP’s anti-tumor role in breast cancer, including interaction with a novel, pro-tumor partner: CAST

Cell Death and Disease(2025)10.1038/s41419-025-07566-4

N/A

0DataRank · unranked

5 citations

Bindeshwar Sah, Yibin Deng, Robert Clarke, Liang Liu, Jasvinder A. Singh

Bayesian identification of differentially expressed isoforms using a novel joint model of RNA-seq data

PLoS Computational Biology(2025)10.1371/journal.pcbi.1012750

N/A

0DataRank · unranked

1 citations

Xiao Wang, Lü Jin, Leena Halakivi-Clarke, Robert Clarke, Andrew F. Neuwald +2 more

debCAM: a bioconductor R package for fully unsupervised deconvolution of complex tissues

Bioinformatics(2020)10.1093/bioinformatics/btaa205

N/A

0DataRank · unranked

35 citations

Chiung-Ting Wu, Niya Wang, David M. Herrington, Robert Clarke, Yue Wang +1 more