Pablo Tamayo

University of California San Diego

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

28.3Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Molecular Signatures Database Hallmark Gene Set Collection

Cell Systems(2015)10.1016/j.cels.2015.12.004

Top 1%

10.9DataRank

Top 1%14694 citations

Chet Birger, Helga Thorvaldsdottir, Mahmoud Ghandi, Jill P. Mesirov, Pablo Tamayo +1 more

Papers

Driven by 30 papers — median percentile 99. Top paper: “The Molecular Signatures Database Hallmark Gene Set Collection”.

The Molecular Signatures Database Hallmark Gene Set Collection

Cell Systems(2015)10.1016/j.cels.2015.12.004

Top 1%

10.9DataRank

Top 1%14694 citations

Chet Birger, Helga Thorvaldsdottir, Mahmoud Ghandi, Jill P. Mesirov, Pablo Tamayo +1 more

Molecular signatures database (MSigDB) 3.0

Bioinformatics(2011)10.1093/bioinformatics/btr260

Top 1%

10.9DataRank

Top 1%7841 citations

Aravind Subramanian, Helga Thorvaldsdottir, Pablo Tamayo, Jill P. Mesirov, Reid M. Pinchback +1 more

Compendium of Immune Signatures Identifies Conserved and Species-Specific Biology in Response to Inflammation

Immunity(2016)10.1016/j.immuni.2015.12.006

Top 3%

6.4DataRank

Top 3%305 citations

Yan Tan, Arthur Liberzon, Pablo Tamayo, Sanchita Bhattacharya, Atul Janardhan Butte +3 more

CHMP2A regulates tumor sensitivity to natural killer cell-mediated cytotoxicity

Nature Communications(2022)10.1038/s41467-022-29469-0

N/A

1.7DataRank · unranked

72 citations

Qi Xie, Briana C. Prager, Ji-Young Yun, Luisjesus S. Cruz, Timothy V. Pham +10 more

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

Proceedings of the National Academy of Sciences(2005)10.1073/pnas.0506580102

N/A

1.6DataRank · unranked

55906 citations

Pablo Tamayo, Vamsi K. Mootha, Sayan Mukherjee, Benjamin L. Ebert, Michael A. Gillette +6 more

PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes

Nature Genetics(2003)10.1038/ng1180

N/A

1.4DataRank · unranked

10534 citations

Cecilia M. Lindgren, Karl-Fredrik Eriksson, Aravind Subramanian, Smita Sihag, Joseph Lehar +19 more

Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA, IDH1, EGFR, and NF1

Cancer Cell(2010)10.1016/j.ccr.2009.12.020

N/A

1.3DataRank · unranked

7682 citations

Katherine A. Hoadley, Elizabeth Purdom, Victoria Wang, Yuan Qi, Matthew D. Wilkerson +31 more

Multiclass cancer diagnosis using tumor gene expression signatures

Proceedings of the National Academy of Sciences(2001)10.1073/pnas.211566398

N/A

1.1DataRank · unranked

2044 citations

Pablo Tamayo, Ryan Rifkin, Sayan Mukherjee, Chen-Hsiang Yeang, Michael Angelo +12 more

SOX2 is an amplified lineage-survival oncogene in lung and esophageal squamous cell carcinomas

Nature Genetics(2009)10.1038/ng.465

N/A

1.0DataRank · unranked

949 citations

Hideo Watanabe, Craig H. Mermel, Soyoung Yu, Sven Perner, So Young Kim +48 more

Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks

Proceedings of the National Academy of Sciences(2000)10.1073/pnas.220392197

N/A

0.965DataRank · unranked

620 citations

Pablo Tamayo, Donna Slonim, Todd R. Golub, Isaac S. Kohane, Donna K. Slonim +1 more

Prognostically relevant gene signatures of high-grade serous ovarian carcinoma

UNC Libraries(2020)10.17615/c9kk-d491

N/A

0.517DataRank · unranked

4 citations

Martin Köbel, Hailei Zhang, Rehan Akbani, Nianxiang Zhang, Katherine A. Hoadley +27 more

WNT Signaling Driven by R-spondin 1 and LGR6 in High-grade Serous Ovarian Cancer

Anticancer Research(2020)10.21873/anticanres.14623

N/A

0DataRank · unranked

11 citations

John Y. Jun, William J. Kim, Pablo Tamayo, Stephen B. Howell, Sanghoon Lee

TEAD1 and TEAD3 Play Redundant Roles in the Regulation of Human Epidermal Proliferation

Journal of Investigative Dermatology(2020)10.1016/j.jid.2020.01.029

N/A

0DataRank · unranked

35 citations

Manisha Tiwari, Xiaojun Xu, Yifang Chen, Pablo Tamayo, George L. Sen +1 more

Mesenchymal and MAPK Expression Signatures Associate with Telomerase Promoter Mutations in Multiple Cancers

Molecular Cancer Research(2020)10.1158/1541-7786.mcr-19-1244

N/A

0DataRank · unranked

34 citations

Grace N. Hibshman, Kevin Hu, Sarah E. Ferrara, James C. Costello, William Kim +4 more

Tissue- and development-stage–specific mRNA and heterogeneous CNV signatures of human ribosomal proteins in normal and cancer samples

Nucleic Acids Research(2020)10.1093/nar/gkaa485

N/A

0DataRank · unranked

29 citations

Anupama Yadav, Huwate Yeerna, Amartya Singh, Michael Biehl, Markus Lux +8 more

Role of ultraviolet mutational signature versus tumor mutation burden in predicting response to immunotherapy

Molecular Oncology(2020)10.1002/1878-0261.12748

N/A

0DataRank · unranked

62 citations

Amélie Boichard, Aaron M. Goodman, Paul Riviere, Huwate Yeerna, Pablo Tamayo +2 more

An integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR and NF1

UNC Libraries(2020)10.17615/qy3p-zp42

N/A

0DataRank · unranked

0 citations

Richard K. Wilson, Katherine A. Hoadley, Gad Getz, Heidi S. Feiler, Jann N. Sarkaria +28 more

SPT6 promotes epidermal differentiation and blockade of an intestinal-like phenotype through control of transcriptional elongation

Nature Communications(2021)10.1038/s41467-021-21067-w

N/A

0DataRank · unranked

28 citations

Xiaojun Xu, Manisha Tiwari, Yifang Chen, Mackenzie Fuller, Varun Bansal +5 more

KITlow Cells Mediate Imatinib Resistance in Gastrointestinal Stromal Tumor

Molecular Cancer Therapeutics(2021)10.1158/1535-7163.mct-20-0973

N/A

0DataRank · unranked

17 citations

Hyunho Yoon, Stephanie Ting, Chih‐Min Tang, Mayra Yebra, Alexander T. Wenzel +6 more

HPV E2, E4, E5 drive alternative carcinogenic pathways in HPV positive cancers

Oncogene(2020)10.1038/s41388-020-01431-8

N/A

0DataRank · unranked

100 citations

Daria A. Gaykalova, Theresa Guo, Alexander V. Favorov, Elana J. Fertig, Pablo Tamayo +18 more

Differential regulation of TNFα and IL-6 expression contributes to immune evasion in prostate cancer

Journal of Translational Medicine(2022)10.1186/s12967-022-03731-x

N/A

0DataRank · unranked

32 citations

Timothy J. Sears, Leisa Sutton, Daniel Rebibo, Kylie Morgan, Tyler J. Nelson +6 more

Syk Inhibition Reprograms Tumor-Associated Macrophages and Overcomes Gemcitabine-Induced Immunosuppression in Pancreatic Ductal Adenocarcinoma

Cancer Research(2023)10.1158/0008-5472.can-22-3645

N/A

0DataRank · unranked

45 citations

In Hwan Park, Timothy V. Pham, Jonathan Weitz, Tatiana Hurtado de Mendoza, Suresh Madheswaran +9 more

Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS

Nature Protocols(2023)10.1038/s41596-023-00892-x

N/A

0DataRank · unranked

25 citations

Ashley Tsang, Jacob T. Mitchell, David Zhou, Julia Bowden, Emily F. Davis-Marcisak +13 more

Multimodal perturbation analyses of cyclin-dependent kinases reveal a network of synthetic lethalities associated with cell-cycle regulation and transcriptional regulation

Scientific Reports(2023)10.1038/s41598-023-33329-2

N/A

0DataRank · unranked

4 citations

Brenton P. Munson, Samson Fong, Rebecca Panwala, Wai Keung Chu, Joseph Rainaldi +14 more

YAP-Driven Malignant Reprogramming of Epithelial Stem Cells at Single Cell Resolution

Research Square(2023)10.21203/rs.3.rs-3426301/v1

N/A

0DataRank · unranked

4 citations

Farhoud Faraji, Sydney I. Ramirez, Lauren Clubb, Kuniaki Sato, Paola Anguiano Quiroz +15 more

Clinical and genomic characterization of chemoradiation-resistant HPV-positive oropharyngeal squamous cell carcinoma

Frontiers in Oncology(2024)10.3389/fonc.2024.1336577

N/A

0DataRank · unranked

7 citations

Fernando T. Zamunér, Stephanie Ting, Liam Chen, Lisa M. Rooper, Pablo Tamayo +4 more

YAP-driven malignant reprogramming of oral epithelial stem cells at single cell resolution

Nature Communications(2025)10.1038/s41467-024-55660-6

N/A

0DataRank · unranked

18 citations

Sydney I. Ramirez, Lauren Clubb, Kuniaki Sato, Valeria Burghi, Thomas S. Hoang +18 more

Self-amplifying NRF2–EZH2 epigenetic loop converts KRAS-initiated progenitors to invasive pancreatic cancer

Nature Cancer(2025)10.1038/s43018-025-01003-3

N/A

0DataRank · unranked

9 citations

Na Li, Ángeles Durán, Isidoro Cobo, Chiara Nicoletti, Kosuke Watari +37 more

MICAL2 Promotes Pancreatic Cancer Growth and Metastasis

Cancer Research(2025)10.1158/0008-5472.can-24-0744

N/A

0DataRank · unranked

8 citations

Sohini Khan, Asimina S. Courelli, Ponmathi Panneerpandian, Deepa Sheik Pran Babu, Evangeline Mose +26 more

Single Nuclei-Derived Molecular Subtypes of Gastrointestinal Stromal Tumors Correlate with Clinicopathologic Features and Predict Clinical Outcomes

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.21.647322

N/A

0DataRank · unranked

0 citations

Alexander T. Wenzel, John Y. Jun, Diwakar Guragain, Chih‐Min Tang, Mark Antkowiak +19 more

Pablo Tamayo

Indexed papers

Top data-sharing exemplar

Papers