Tobias Marschall

Also affiliated with Heinrich Heine University Düsseldorf

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

51.3Author DataRank

Indexed papers

19in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 19 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The complete sequence of a human genome

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.26.445798

Top 2%

8.2DataRank

Top 2%182 citations

Sergey Koren, Arang Rhie, Allison A. Regier, Andrey V. Bzikadze, Alla Mikheenko +97 more

Papers

Driven by 70 papers — median percentile 84. Top paper: “Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes”.

Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes

Nature Biotechnology(2020)10.1038/s41587-020-0503-6

N/A

12.8DataRank · unranked

655 citations

Trevor Pesout, Ryan Lorig-Roach, Marina Haukness, Hugh E. Olsen, Colleen M. Bosworth +27 more

A robust benchmark for detection of germline large deletions and insertions

Nature Biotechnology(2020)10.1038/s41587-020-0538-8

N/A

10.3DataRank · unranked

486 citations

Nancy F. Hansen, Nathan D. Olson, Lesley M. Chapman, James C. Mullikin, Chunlin Xiao +45 more

The complete sequence of a human genome

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.26.445798

Top 2%

8.2DataRank

Top 2%182 citations

Sergey Koren, Arang Rhie, Allison A. Regier, Andrey V. Bzikadze, Alla Mikheenko +97 more

The complete sequence of a human genome

Science(2022)10.1126/science.abj6987

Top 3%

7.0DataRank

Top 3%3361 citations

Sergey Koren, Arang Rhie, Allison A. Regier, Andrey V. Bzikadze, Alla Mikheenko +94 more

High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios

Cell(2022)10.1016/j.cell.2022.08.004

Top 3%

6.3DataRank

Top 3%1056 citations

Uday S. Evani, Xuefang Zhao, Anna O. Basile, Haley Abel, Allison A. Regier +37 more

Haplotype-resolved diverse human genomes and integrated analysis of structural variation

Science(2021)10.1126/science.abf7117

Top 4%

5.7DataRank

Top 4%812 citations

Peter A. Audano, Qihui Zhu, Bernardo Rodríguez–Martín, David Porubsky, Marc Jan Bonder +60 more

The Human Pangenome Project: a global resource to map genomic diversity

Nature(2022)10.1038/s41586-022-04601-8

Top 4%

5.6DataRank

Top 4%571 citations

Lucinda Antonacci-Fulton, Thibaut Hourlier, Heather A. Lawson, Julian K. Lucas, Adam M. Phillippy +36 more

Chromosome-scale, haplotype-resolved assembly of human genomes

Nature Biotechnology(2020)10.1038/s41587-020-0711-0

N/A

5.3DataRank · unranked

207 citations

Arkarachai Fungtammasan, Mark J. P. Chaisson, Mike Chou, Anthony Schmitt, Xiang Zhou +18 more

Pangenome graph construction from genome alignments with Minigraph-Cactus

Nature Biotechnology(2023)10.1038/s41587-023-01793-w

N/A

5.0DataRank · unranked

318 citations

Jean Monlong, Jana Ebler, Adam M. Novak, Jordan M. Eizenga, Yan Gao +94 more

Benchmarking challenging small variants with linked and long reads

Cell Genomics(2022)10.1016/j.xgen.2022.100128

Top 4%

4.9DataRank

Top 4%212 citations

Nathan D. Olson, Lindsay Harris, Ziad Khan, Jesse Farek, Medhat Mahmoud +36 more

A Draft Human Pangenome Reference

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.09.499321

Top 8%

2.9DataRank

Top 8%74 citations

Mobin Asri, Daniel Doerr, Eoghan Harrington, Hickey, Glenn, Julian K. Lucas +47 more

Increased mutation and gene conversion within human segmental duplications

Nature(2023)10.1038/s41586-023-05895-y

N/A

2.1DataRank · unranked

114 citations

Philip C. Dishuck, William T. Harvey, William S. DeWitt, Xavi Guitart, Michael E. Goldberg +108 more

Benchmarking challenging small variants with linked and long reads

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.24.212712

Top 11%

2.0DataRank

Top 11%60 citations

Nathan D. Olson, Lindsay Harris, Jennifer McDaniel, Ziad Khan, Jesse Farek +37 more

A diploid assembly-based benchmark for variants in the major histocompatibility complex

Nature Communications(2020)10.1038/s41467-020-18564-9

Top 11%

2.0DataRank

Top 11%102 citations

Justin Wagner, Qiandong Zeng, Erik Garrison, Shilpa Garg, Arkarachai Fungtammasan +21 more

Long-read sequencing and structural variant characterization in 1,019 samples from the 1000 Genomes Project

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.18.590093

Top 16%

1.3DataRank

Top 16%38 citations

Samarendra Pani, Bernardo Rodríguez–Martín, Jana Ebler, Carsten Hain, Vasiliki Tsapalou +10 more

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

Nature Biotechnology(2019)10.1038/s41587-019-0217-9

N/A

1.1DataRank · unranked

1912 citations

Paul Peluso, William J. Rowell, Pi-Chuan Chang, Richard J. Hall, Gregory T. Concepcion +24 more

Pangenome Graph Construction from Genome Alignment with Minigraph-Cactus

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.06.511217

N/A

1.1DataRank · unranked

34 citations

Jean Monlong, Evan E. Eichler, Maria Nattestad, Jordan M. Eizenga, Yan Gao +5 more

Complex genetic variation in nearly complete human genomes

Nature(2025)10.1038/s41586-025-09140-6

Top 19%

1.1DataRank

Top 19%83 citations

Peter Ebert, Peter A. Audano, Mark Loftus, David Porubsky, Feyza Yilmaz +62 more

Eleven grand challenges in single-cell data science

Genome Biology(2020)10.1186/s13059-020-1926-6

N/A

1.1DataRank · unranked

1396 citations

Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson +49 more

A draft human pangenome reference

Yearbook of Paediatric Endocrinology(2023)10.1530/ey.20.12.1

Top 19%

1.1DataRank

Top 19%29 citations

Mobin Asri, Evan E. Eichler, Daniel Doerr, Eoghan Harrington, Hickey, Glenn +12 more

Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads

Nature Biotechnology(2020)10.1038/s41587-020-0719-5

N/A

0.815DataRank · unranked

228 citations

Peter Ebert, Peter A. Audano, Mitchell R. Vollger, William T. Harvey, Pierre Marijon +16 more

Complex genetic variation in nearly complete human genomes

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.24.614721

Top 27%

0.741DataRank

Top 27%27 citations

Peter Ebert, Peter A. Audano, Mark Loftus, David Porubsky, Feyza Yilmaz +62 more

Assembly of 43 human Y chromosomes reveals extensive complexity and variation

Nature(2023)10.1038/s41586-023-06425-6

N/A

0.721DataRank · unranked

121 citations

Peter Ebert, Mark Loftus, Feyza Yilmaz, Peter A. Audano, Glennis A. Logsdon +27 more

Automated assembly of high-quality diploid human reference genomes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.06.483034

Top 28%

0.719DataRank

Top 28%22 citations

Giulio Formenti, Arang Rhie, Andrea Guarracino, Chentao Yang, Jonathan M. D. Wood +77 more

Recombination between heterologous human acrocentric chromosomes

Nature(2023)10.1038/s41586-023-05976-y

N/A

0.710DataRank · unranked

113 citations

Silvia Buonaiuto, Leonardo Gomes de Lima, Tamara Potapova, Arang Rhie, Sergey Koren +106 more

Reconstruction of the human amylase locus reveals ancient duplications seeding modern-day variation

Science(2024)10.1126/science.adn0609

N/A

0.590DataRank · unranked

50 citations

Charikleia Karageorgiou, Kwondo Kim, Petar Pajic, Kendra Scheer, Christine R. Beck +18 more

A strategy for building and using a human reference pangenome

F1000Research(2021)10.12688/f1000research.19630.2

N/A

0.533DataRank · unranked

10 citations

Giuseppe Narzisi, Valérie Schneider, Peter A. Audano, Evan Biederstedt, Lon Blauvelt +35 more

Assembly of 43 diverse human Y chromosomes reveals extensive complexity and variation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.01.518658

Top 37%

0.528DataRank

Top 37%9 citations

Peter Ebert, Mark Loftus, Feyza Yilmaz, Peter A. Audano, Glennis A. Logsdon +27 more

12 Grand Challenges in Single-Cell Data Science

(2019)10.7287/peerj.preprints.27885v3

N/A

0.449DataRank · unranked

7 citations

Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson +50 more

SVarp: pangenome-based structural variant discovery

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.18.580171

Top 48%

0.378DataRank

Top 48%8 citations

Jana Ebler, Samarendra Pani, Tobias Rausch, Jan O. Korbel, Tobias Marschall +1 more

A comprehensive catalog of 3D genome organization in diverse human genomes facilitates understanding of the impact of structural variation on chromatin structure

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.15.540856

Top 49%

0.360DataRank

Top 49%5 citations

Marc Jan Bonder, Sabriya A. Syed, HGSVC Functional Analysis Working Group, Michael C. Zody, Mark J. P. Chaisson +7 more

12 Grand challenges in single-cell data science

(2019)10.7287/peerj.preprints.27885v2

N/A

0.330DataRank · unranked

5 citations

Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson +50 more

De novo assembly of 64 haplotype-resolved human genomes of diverse ancestry and integrated analysis of structural variation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.16.423102

Top 53%

0.322DataRank

Top 53%5 citations

Peter A. Audano, Qihui Zhu, Bernardo Rodríguez–Martín, David Porubsky, Marc Jan Bonder +58 more

12 Grand Challenges in Single-Cell Data Science

(2019)10.7287/peerj.preprints.27885

N/A

0.228DataRank · unranked

2 citations

Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson +50 more

Using the linear references from the pangenome to discover missing autism variants

Nature Communications(2026)10.1038/s41467-026-68378-4

Top 65%

0.208DataRank

Top 65%3 citations

Jiadong Lin, Michelle D. Noyes, Young-Jun Kwon, Isaac Wong, Nidhi Koundinya +252 more

12 Grand challenges in single-cell data science

(2019)10.7287/peerj.preprints.27885v1

N/A

0.193DataRank · unranked

2 citations

Johannes Köster, Ewa Szcureck, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos +50 more

Sequence-to-graph alignment based copy number calling using a network flow formulation

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.21.689771

N/A

0DataRank · unranked

0 citations

Jonas Weber, Gunnar W. Klau, Tobias Marschall, Timofey Prodanov, Hugo Magalhães

Pangenome Graphs

Annual Review of Genomics and Human Genetics(2020)10.1146/annurev-genom-120219-080406

N/A

0DataRank · unranked

355 citations

Adam M. Novak, Jonas A. Sibbesen, Simon Heumos, Ali Ghaffaari, Hickey, Glenn +11 more

Recurrent inversion toggling and great ape genome evolution

Nature Genetics(2020)10.1038/s41588-020-0646-x

N/A

0DataRank · unranked

89 citations

Ashley D. Sanders, Wolfram Höps, PingHsun Hsieh, Arvis Sulovari, Ruiyang Li +12 more

Pangenome-based genome inference

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.11.378133

N/A

0DataRank · unranked

25 citations

Wayne E. Clarke, Tobias Rausch, Peter A. Audano, Torsten Houwaart, Jan O. Korbel +5 more

Expectations and blind spots for structural variation detection from short-read alignment and long-read assembly

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.03.168831

N/A

0DataRank · unranked

6 citations

Ryan L. Collins, Wan-Ping Lee, Alexandra M. Weber, Yukyung Jun, Qihui Zhu +18 more

Expectations and blind spots for structural variation detection from long-read assemblies and short-read genome sequencing technologies

The American Journal of Human Genetics(2021)10.1016/j.ajhg.2021.03.014

N/A

0DataRank · unranked

137 citations

Ryan L. Collins, Wan‐Ping Lee, Alexandra M. Weber, Yukyung Jun, Qihui Zhu +18 more

ASHLEYS: automated quality control for single-cell Strand-seq data

Bioinformatics(2021)10.1093/bioinformatics/btab221

N/A

0DataRank · unranked

16 citations

Ashley D. Sanders, Jan O. Korbel, Tobias Marschall, Peter Ebert, C. Gros

Haplotype-resolved inversion landscape reveals hotspots of mutational recurrence associated with genomic disorders

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.20.472354

N/A

0DataRank · unranked

11 citations

Wolfram Höps, Hufsah Ashraf, PingHsun Hsieh, Bernardo Rodríguez–Martín, Feyza Yilmaz +20 more

Haplotype-aware single-cell multiomics uncovers functional effects of somatic structural variation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.11.468039

N/A

0DataRank · unranked

4 citations

Karen Grimes, Peter‐Martin Bruch, Tobias Rausch, Patrick Hasenfeld, Radhakrishnan Sabarinathan +13 more

Pangenome-based genome inference allows efficient and accurate genotyping across a wide spectrum of variant classes

Nature Genetics(2022)10.1038/s41588-022-01043-w

N/A

0DataRank · unranked

290 citations

Peter Ebert, Wayne E. Clarke, Tobias Rausch, Peter A. Audano, Torsten Houwaart +7 more

SVision: a deep learning approach to resolve complex structural variants

Nature Methods(2022)10.1038/s41592-022-01609-w

N/A

0DataRank · unranked

112 citations

Songbo Wang, Peter A. Audano, Deyu Meng, Jacob I. Flores, Walter A. Kosters +6 more

Functional analysis of structural variants in single cells using Strand-seq

Nature Biotechnology(2022)10.1038/s41587-022-01551-4

N/A

0DataRank · unranked

39 citations

Karen Grimes, Kerstin K. Rauwolf, Peter‐Martin Bruch, Tobias Rausch, Patrick Hasenfeld +16 more

Genetic polyploid phasing from low-depth progeny samples

iScience(2022)10.1016/j.isci.2022.104461

N/A

0DataRank · unranked

1 citations

Rebecca Serra Mari, Richard Finkers, Paul Arens, Björn Usadel, Tobias Marschall +2 more

Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspring data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.10.491293

N/A

0DataRank · unranked

6 citations

Sven Schrinner, Richard Finkers, Paul Arens, Maximilian Schmidt, Björn Usadel +3 more

Inversion polymorphism in a complete human genome assembly

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.06.511148

N/A

0DataRank · unranked

5 citations

William T. Harvey, Allison N. Rozanski, Jana Ebler, Wolfram Höps, Hufsah Ashraf +7 more

SVision: A deep learning approach to resolve complex structural variants

Research Square(2022)10.21203/rs.3.rs-1270846/v1

N/A

0DataRank · unranked

2 citations

Jiadong Lin, Songbo Wang, Peter A. Audano, Jacob I. Flores, Walter A. Kosters +5 more

Constructing founder sets under allelic and non-allelic homologous recombination

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.27.493721

N/A

0DataRank · unranked

0 citations

Tobias Marschall, Daniel Doerr, Konstantinn Bonnet

Inversion polymorphism in a complete human genome assembly

Genome biology(2023)10.1186/s13059-023-02919-8

N/A

0DataRank · unranked

33 citations

William T. Harvey, Allison N. Rozanski, Jana Ebler, Wolfram Höps, Hufsah Ashraf +7 more

Constructing founder sets under allelic and non-allelic homologous recombination

Algorithms for Molecular Biology(2023)10.1186/s13015-023-00241-3

N/A

0DataRank · unranked

4 citations

Tobias Marschall, Daniel Doerr, Konstantinn Bonnet

Allele detection using k-mer-based sequencing error profiles

Bioinformatics Advances(2023)10.1093/bioadv/vbad149

N/A

0DataRank · unranked

1 citations

Jana Ebler, Tobias Marschall, Hufsah Ashraf

Gaps and complex structurally variant loci in phased genome assemblies

Genome Research(2023)10.1101/gr.277334.122

N/A

0DataRank · unranked

62 citations

Mitchell R. Vollger, William T. Harvey, Allison N. Rozanski, Peter Ebert, Hickey, Glenn +8 more

Whole-genome long-read sequencing downsampling and its effect on variant-calling precision and recall

Genome Research(2023)10.1101/gr.278070.123

N/A

0DataRank · unranked

36 citations

Peter Ebert, Jana Ebler, Peter A. Audano, Katherine M. Munson, Kendra Hoekzema +6 more

Whole-genome long-read sequencing downsampling and its effect on variant calling precision and recall

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.04.539448

N/A

0DataRank · unranked

11 citations

Peter Ebert, Jana Ebler, Peter A. Audano, Katherine M. Munson, Kendra Hoekzema +6 more

Panacus: fast and exact pangenome growth and core size estimation

Bioinformatics(2024)10.1093/bioinformatics/btae720

N/A

0DataRank · unranked

33 citations

Erik Garrison, Jens Stoye, Tobias Marschall, Daniel Doerr, Luca Parmigiani

Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspring data

Genome biology(2024)10.1186/s13059-023-03160-z

N/A

0DataRank · unranked

28 citations

Sven Schrinner, Richard Finkers, Freya Maria Rosemarie Ziegler, Paul Arens, Maximilian Schmidt +4 more

Structural and genetic diversity in the secreted mucins MUC5AC and MUC5B

The American Journal of Human Genetics(2024)10.1016/j.ajhg.2024.06.007

N/A

0DataRank · unranked

22 citations

Timofey Prodanov, PingHsun Hsieh, Evangelos Nizamis, William T. Harvey, Arvis Sulovari +8 more

Impact and characterization of serial structural variations across humans and great apes

Nature Communications(2024)10.1038/s41467-024-52027-9

N/A

0DataRank · unranked

12 citations

Tobias Rausch, Michael Jendrusch, Hufsah Ashraf, Peter A. Audano, Ola Austine +49 more

Panacus: fast and exact pangenome growth and core size estimation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.11.598418

N/A

0DataRank · unranked

7 citations

Erik Garrison, Jens Stoye, Tobias Marschall, Daniel Doerr, Luca Parmigiani

An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes

Genome Research(2024)10.1101/gr.279419.124

N/A

0DataRank · unranked

2 citations

Marc Jan Bonder, Sabriya A. Syed, Matthew Jensen, HGSVC Functional Analysis Working Group, Mark Gerstein +9 more

Phasing Diploid Genome Assembly Graphs with Single-Cell Strand Sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.15.580432

N/A

0DataRank · unranked

1 citations

Maryam Ghareghani, William T. Harvey, David Porubsky, Sergey Koren, Evan E. Eichler +3 more

Structural and genetic diversity in the secreted mucins, MUC5AC and MUC5B

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.18.585560

N/A

0DataRank · unranked

0 citations

Timofey Prodanov, PingHsun Hsieh, Evangelos Nizamis, William T. Harvey, Arvis Sulovari +8 more

Structural variation in 1,019 diverse humans based on long-read sequencing

Nature(2025)10.1038/s41586-025-09290-7

N/A

0DataRank · unranked

56 citations

Samarendra Pani, Jana Ebler, Carsten Hain, Vasiliki Tsapalou, Arda Soylev +27 more

Locityper enables targeted genotyping of complex polymorphic genes

Nature Genetics(2025)10.1038/s41588-025-02362-4

N/A

0DataRank · unranked

9 citations

Elizabeth G. Plender, Guiscard Seebohm, Sven G. Meuth, Evan E. Eichler, Tobias Marschall +1 more

Structural and transduction patterns of human-specific polymorphic SVA insertions

Mobile DNA(2025)10.1186/s13100-025-00373-w

N/A

0DataRank · unranked

1 citations

Mark Loftus, Emily C. Golba, Haley Abel, Hufsah Ashraf, Peter A. Audano +64 more

Tobias Marschall

Indexed papers

Top data-sharing exemplar

Papers