🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Denis Schapiro

Broad Institute

ORCID: 0000-0002-9391-5722

Also affiliated with Harvard University, Heidelberg University, University Hospital Heidelberg, IFOM, German Center for Lung Research, HeidelbergCement (United States)

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
11.0Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution

Cell(2020)10.1016/j.cell.2020.03.053
Top 4%
5.6DataRank
Top 4%609 citations

Aviv Regev, Philipp Oberdoerffer, Tal Nawy, Anna Hupalowska, Jennifer E. Rood +92 more

Papers

Driven by 18 papers — median percentile 96. Top paper: “The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution”.

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution

Cell(2020)10.1016/j.cell.2020.03.053
Top 4%
5.6DataRank
Top 4%609 citations

Aviv Regev, Philipp Oberdoerffer, Tal Nawy, Anna Hupalowska, Jennifer E. Rood +92 more

A molecular single-cell lung atlas of lethal COVID-19

Nature(2021)10.1038/s41586-021-03569-1
Top 4%
5.3DataRank
Top 4%737 citations

Jana Biermann, Huachao Huang, Yiping Wang, Ajay Nair, Somnath Tagore +39 more

Evolution of delayed resistance to immunotherapy in a melanoma responder

Nature Medicine(2021)10.1038/s41591-021-01331-8
N/A
3.6DataRank · unranked
137 citations

Jia‐Ren Lin, Emily Robitschek, Gyulnara G. Kasumova, Alex Heyde, Alvin Shi +35 more

Three-dimensional spatial transcriptomics uncovers cell type localizations in the human rheumatoid arthritis synovium

Communications Biology(2022)10.1038/s42003-022-03050-3
N/A
2.2DataRank · unranked
83 citations

Denis Schapiro, Konstantin Carlberg, Britta Lötstedt, Ludvig Larsson, Franziska Hildebrandt +9 more

Stepwise-edited, human melanoma models reveal mutations’ effect on tumor and microenvironment

Science(2022)10.1126/science.abi8175
N/A
1.8DataRank · unranked
70 citations

Elena Torlai Triglia, John Y. H. Kwon, Tommaso Biancalani, Labib R. Zakka, Saurabh Parkar +16 more

MITI minimum information guidelines for highly multiplexed tissue images

Nature Methods(2022)10.1038/s41592-022-01415-4
N/A
1.7DataRank · unranked
88 citations

Clarence Yapp, Artem Sokolov, Sheila M. Reynolds, Yu-An Chen, Damir Sudar +95 more

Single-nucleus and spatial transcriptomics of archival pancreatic cancer reveals multi-compartment reprogramming after neoadjuvant treatment

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.25.267336
N/A
1.6DataRank · unranked
35 citations

Karthik A. Jagadeesh, Jimmy A. Guo, Hannah I. Hoffman, Payman Yadollahpour, Rahul Mohan +46 more

High-definition spatial transcriptomics for in situ tissue profiling

Nature Methods(2019)10.1038/s41592-019-0548-y
N/A
1.1DataRank · unranked
1196 citations

Gökçen Eraslan, Fredrik Salmén, Johanna Klughammer, Linnea Stenbeck, Denis Schapiro +13 more

MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging

Nature Methods(2021)10.1038/s41592-021-01308-y
N/A
0.827DataRank · unranked
247 citations

Artem Sokolov, Clarence Yapp, Yu‐An Chen, Jeremy L. Muhlich, Joshua M. Hess +22 more

Dissecting the treatment-naive ecosystem of human melanoma brain metastasis

Cell(2022)10.1016/j.cell.2022.06.007
N/A
0.807DataRank · unranked
216 citations

Johannes C. Melms, Amit Dipak Amin, Yiping Wang, Lindsay Caprio, Alcida Karz +54 more

In silico tissue generation and power analysis for spatial omics

Nature Methods(2023)10.1038/s41592-023-01766-6
N/A
0.571DataRank · unranked
44 citations

Denis Schapiro, Bianca Dumitrascu, Sanja Vicković, Prisca Liberali, Ethan A. G. Baker

Galaxy-ME: A Web-based Software Resource for Interactive Analysis of Multiplex Tissue Imaging Datasets

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.18.504436
N/A
0.330DataRank · unranked
8 citations

Cameron Watson, Qiang Gu, Daniel Persson, Luke Sargent, Yu‐An Chen +13 more

Power analysis for spatial omics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.26.477748
N/A
0.312DataRank · unranked
7 citations

Denis Schapiro, Bianca Dumitrascu, Prisca Liberali, Sanja Vicković, Ethan A. G. Baker

Three-dimensional spatial transcriptomics uncovers cell type dynamics in the rheumatoid arthritis synovium

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.10.420463
N/A
0.269DataRank · unranked
5 citations

Denis Schapiro, Konstantin Carlberg, Britta Lötstedt, Ludvig Larsson, Marina Korotkova +8 more

MCMICRO: A scalable, modular image-processing pipeline for multiplexed tissue imaging

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.15.435473
N/A
0DataRank · unranked
43 citations

Artem Sokolov, Clarence Yapp, Jeremy L. Muhlich, Joshua M. Hess, Jia‐Ren Lin +16 more

Spatial cell type mapping of multiple sclerosis lesions

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.03.514906
N/A
0DataRank · unranked
16 citations

Pau Badia-i-Mompel, Ricardo O. Ramirez Flores, Patricia Sekol, Annika Hofmann, Thomas Thäwel +11 more

Single-nucleus RNA-seq of frozen archival primary pancreatic ductal adenocarcinoma uncovers multi-compartment intratumoral heterogeneity associated with neoadjuvant treatment.

Journal of Clinical Oncology(2020)10.1200/jco.2020.38.15_suppl.4633
N/A
0DataRank · unranked
0 citations

Hannah I. Hoffman, Orr Ashenberg, Eugene Drokhlyansky, Nicholas Van Wittenberghe, Samouil Farhi +18 more

Lifting the curse from high-dimensional data: automated projection pursuit clustering for a variety of biological data modalities

GigaScience(2025)10.1093/gigascience/giaf052
N/A
0DataRank · unranked
6 citations

Evgeniy Tabatsky, Zainab Rahil, Devon J. Eddins, Sasha Tkachev, Florian Georgescauld +13 more