Junmei Wang

Also affiliated with McGovern Institute for Brain Research, Qilu University of Technology, University of Pittsburgh, Chinese Academy of Medical Sciences & Peking Union Medical College, First Affiliated Hospital of Fujian Medical University, Shandong Academy of Sciences, Genomics (United Kingdom), Xinxiang Central Hospital, Fu Wai Hospital

Computer ScienceBiochemistry, Genetics and Molecular BiologyMedicineMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 65 papers. Top paper: “Development and testing of a general amber force field”.

Development and testing of a general amber force field

Journal of Computational Chemistry(2004)10.1002/jcc.20035

N/A

1.5DataRank · unranked

19217 citations

Romain M. Wolf, James W. Caldwell, Peter A. Kollman, David A. Case, Junmei Wang

NNKcat: deep neural network to predict catalytic constants (Kcat) by integrating protein sequence and substrate structure with enhanced data imbalance handling

Briefings in Bioinformatics(2025)10.1093/bib/bbaf212

N/A

0.325DataRank · unranked

6 citations

Xiguang Qi, Lianjin Cai, Yue Liu, Hao Tang, Lei Xie +2 more

Landscape of drug-resistance mutations in kinase regulatory hotspots

Briefings in Bioinformatics(2020)10.1093/bib/bbaa108

N/A

0DataRank · unranked

22 citations

Hanyang Li, Junmei Wang, Zhongming Zhao, Pora Kim

Novel MscL agonists that allow multiple antibiotics cytoplasmic access activate the channel through a common binding site

PLoS ONE(2020)10.1371/journal.pone.0228153

N/A

0DataRank · unranked

18 citations

Junmei Wang, Irene Iscla, Paul Blount, Robin Wray

Orientation and dynamics of Cu 2+ based DNA labels from force field parameterized MD elucidates the relationship between EPR distance constraints and DNA backbone distances

Physical Chemistry Chemical Physics(2020)10.1039/d0cp05016d

N/A

0DataRank · unranked

12 citations

Joshua Casto, Xiaowei Bogetti, Charu Arora, Junmei Wang, Sunil Saxena +1 more

Transmembrane Polar Relay Drives the Allosteric Regulation for ABCG5/G8 Sterol Transporter

International Journal of Molecular Sciences(2020)10.3390/ijms21228747

N/A

0DataRank · unranked

10 citations

Aiman A. Zein, Angelica Venes, Junmei Wang, Jyh‐Yeuan Lee, Bala M. Xavier

Resection and survival data from a clinical trial of glioblastoma multiforme‐specific IRDye800‐BBN fluorescence‐guided surgery

Bioengineering & Translational Medicine(2020)10.1002/btm2.10182

N/A

0DataRank · unranked

30 citations

Chongwei Chi, Deling Li, Jingjing Zhang, Gang Niu, Fangqiao Lv +8 more

Nonequilibrium molecular dynamics simulations of infrared laser-induced dissociation of a tetrameric Aβ42 β-barrel in a neuronal membrane model

Chemistry and Physics of Lipids(2020)10.1016/j.chemphyslip.2020.105030

N/A

0DataRank · unranked

2 citations

Junmei Wang, Philippe Derreumaux, Phuong H. Nguyen, Viet Hoang Man

Transmembrane polar relay drives the allosteric regulation for ABCG5/G8 sterol transporter

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.06.327825

N/A

0DataRank · unranked

4 citations

Aiman A. Zein, Angelica Venes, Junmei Wang, Jyh‐Yeuan Lee, Bala M. Xavier

A Promising New Approach for In Silico Prediction of Drug Concentration Profiles for Drug Candidates Lack of Experimental Pharmacokinetic Data

(2020)10.22541/au.159110373.38917551

N/A

0DataRank · unranked

1 citations

Beihong Ji, Shuhan Liu, Yuzhao Zhang, Junmei Wang, Jingchen Zhai

PBPK Models of Two CNS Stimulants, Amphetamine and Methylphenidate, for Clinical Dosing Regimen Optimizations

Archives of Pharmacy & Pharmacology Research(2020)10.33552/appr.2020.02.000545

N/A

0DataRank · unranked

0 citations

Junmei Wang

Sulfatides are endogenous ligands for the TLR4–MD-2 complex

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2105316118

N/A

0DataRank · unranked

66 citations

Muhammad Athamna, Ying Wang, Junmei Wang, Marina A. Freudenberg, Tao Yue +6 more

Recent progress in general force fields of small molecules

Current Opinion in Structural Biology(2021)10.1016/j.sbi.2021.11.011

N/A

0DataRank · unranked

55 citations

Brandon Walker, Viet Hoang Man, Pengyu Ren, Junmei Wang, Xibing He

Aicardi-Goutières syndrome-associated mutation at ADAR1 gene locus activates innate immune response in mouse brain

Journal of Neuroinflammation(2021)10.1186/s12974-021-02217-9

N/A

0DataRank · unranked

52 citations

Clayton A. Wiley, Richard A. Steinman, Sheng Yi, Beihong Ji, Junmei Wang +6 more

Hypoxia acts as an environmental cue for the human tissue-resident memory T cell differentiation program

JCI Insight(2021)10.1172/jci.insight.138970

N/A

0DataRank · unranked

53 citations

Yulun Chiu, Rebecca Shaw, Junmei Wang, Cassian Yee, Farah Hasan

Mass spectrometric identification of immunogenic SARS-CoV-2 epitopes and cognate TCRs

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2111815118

N/A

0DataRank · unranked

36 citations

Yulun Chiu, Eric Huang, Michelle Chen, Junmei Wang, Ivy Lai +5 more

Machine learning on ligand-residue interaction profiles to significantly improve binding affinity prediction

Briefings in Bioinformatics(2021)10.1093/bib/bbab054

N/A

0DataRank · unranked

35 citations

Xibing He, Jingchen Zhai, Yuzhao Zhang, Viet Hoang Man, Junmei Wang +1 more

In silico binding profile characterization of SARS-CoV-2 spike protein and its mutants bound to human ACE2 receptor

Briefings in Bioinformatics(2021)10.1093/bib/bbab188

N/A

0DataRank · unranked

26 citations

Xibing He, Jingchen Zhai, Beihong Ji, Viet Hoang Man, Junmei Wang +1 more

Incorporating structural similarity into a scoring function to enhance the prediction of binding affinities

Journal of Cheminformatics(2021)10.1186/s13321-021-00493-4

N/A

0DataRank · unranked

6 citations

Xibing He, Yuzhao Zhang, Jingchen Zhai, Viet Hoang Man, Shuhan Liu +2 more

Structure and dynamics of major histocompatibility class Ib molecule H2-M3 complexed with mitochondrial-derived peptides

Journal of Biomolecular Structure and Dynamics(2021)10.1080/07391102.2021.1942214

N/A

0DataRank · unranked

2 citations

San-Tai Shen, Diana R. Tomchick, Junmei Wang, Chyung‐Ru Wang, J. Deisenhofer +1 more

Immunogenic SARS-CoV2 Epitopes Defined by Mass Spectrometry

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.20.453160

N/A

0DataRank · unranked

4 citations

Yulun Chiu, Eric Huang, Michelle Chen, Junmei Wang, Ivy Lai +5 more

Binding Profile Assessment of N501Y: a More Infectious Mutation on the Receptor Binding Domain of SARS-CoV-2 Spike Protein

ChemRxiv(2021)10.26434/chemrxiv.13710961.v1

N/A

0DataRank · unranked

1 citations

Xibing He, Viet Hoang Man, Jingchen Zhai, Beihong Ji, Junmei Wang +1 more

Binding Profile Assessment of N501Y: a More Infectious Mutation on the Receptor Binding Domain of SARS-CoV-2 Spike Protein

ChemRxiv(2021)10.26434/chemrxiv.13710961.v2

N/A

0DataRank · unranked

1 citations

Xibing He, Viet Hoang Man, Jingchen Zhai, Beihong Ji, Junmei Wang +1 more

Binding Profile Assessment of N501Y: a More Infectious Mutation on the Receptor Binding Domain of SARS-CoV-2 Spike Protein

ChemRxiv(2021)10.26434/chemrxiv.13710961

N/A

0DataRank · unranked

1 citations

Xibing He, Viet Hoang Man, Jingchen Zhai, Beihong Ji, Junmei Wang +1 more

In Silico Defined SARS-CoV2 Epitopes May Not Predict Immunogenicity to COVID19

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.08.451555

N/A

0DataRank · unranked

0 citations

Yulun Chiu, Michelle Chen, Junmei Wang, Ivy Lai, Shailbala Singh +3 more

A New Approach for In Silico Prediction of Oral Drug Concentration Profiles in Human for Drug Candidates Lack Experimental Pharmacokinetic Data

Research Square(2021)10.21203/rs.3.rs-687537/v1

N/A

0DataRank · unranked

0 citations

Beihong Ji, Shuhan Liu, Yuzhao Zhang, Junmei Wang, Jingchen Zhai

Overcoming pancreatic cancer immune resistance by codelivery of CCR2 antagonist using a STING-activating gemcitabine-based nanocarrier

Materials Today(2022)10.1016/j.mattod.2022.11.008

N/A

0DataRank · unranked

60 citations

Haozhe Huang, Raymond E. West, Min Zhang, Bei Zhang, Xinran Cai +11 more

Elastic moduli of normal and cancer cell membranes revealed by molecular dynamics simulations

Physical Chemistry Chemical Physics(2022)10.1039/d1cp04836h

N/A

0DataRank · unranked

26 citations

Viet Hoang Man, Mai Suan Li, Philippe Derreumaux, Junmei Wang, Phuong H. Nguyen +1 more

Investigation of the Structure of Full-Length Tau Proteins with Coarse-Grained and All-Atom Molecular Dynamics Simulations

ACS Chemical Neuroscience(2022)10.1021/acschemneuro.2c00381

N/A

0DataRank · unranked

15 citations

Viet Hoang Man, Jie Gao, Junmei Wang, Xibing He

Activation of a Bacterial Mechanosensitive Channel, MscL, Underlies the Membrane Permeabilization of Dual-Targeting Antibacterial Compounds

Antibiotics(2022)10.3390/antibiotics11070970

N/A

0DataRank · unranked

13 citations

Junmei Wang, Paul Blount, Irene Iscla, Robin Wray

RNPS1 inhibits excessive tumor necrosis factor/tumor necrosis factor receptor signaling to support hematopoiesis in mice

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2200128119

N/A

0DataRank · unranked

12 citations

Jin Huk Choi, Sara Hildebrand, Sara Ludwig, Jianhui Wang, Evan Nair‐Gill +14 more

Physiologically-Based Pharmacokinetics Modeling for Hydroxychloroquine as a Treatment for Malaria and Optimized Dosing Regimens for Different Populations

Journal of Personalized Medicine(2022)10.3390/jpm12050796

N/A

0DataRank · unranked

6 citations

Beihong Ji, Lianjin Cai, Shuhan Liu, Yuchen Sun, Junmei Wang +1 more

Stable Cavitation Interferes with Aβ16–22 Oligomerization

Journal of Chemical Information and Modeling(2022)10.1021/acs.jcim.2c00764

N/A

0DataRank · unranked

7 citations

Xibing He, Junmei Wang, Viet Hoang Man

Joint Computational/Cell-Based Approach for Screening Inhibitors of Tau Oligomerization: A Proof-of-Concept Study

Journal of Alzheimer s Disease(2022)10.3233/jad-220450

N/A

0DataRank · unranked

4 citations

Da Lin, Xibing He, Jie Gao, Junmei Wang, Viet Hoang Man

Development of Machine Learning Models to Predict a Chemical’s Anti-SARS-CoV-2 Activities

ChemRxiv(2022)10.26434/chemrxiv-2022-bckn8

N/A

0DataRank · unranked

0 citations

Yuhui Wu, Elena N. Thomas, Jocelyn N. Edwards, Xibing He, Junmei Wang +1 more

Arf GTPase activates the WAVE Regulatory Complex through a novel binding site

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.13.491857

N/A

0DataRank · unranked

0 citations

Yijun Liu, Abbigale J. Brown, Matthias Schaks, Bojian Ding, Daniel A. Kramer +8 more

AmberTools

Journal of Chemical Information and Modeling(2023)10.1021/acs.jcim.3c01153

N/A

0DataRank · unranked

1916 citations

Hasan Metin Aktulga, Kellon Belfon, David S. Cerutti, G. Andrés Cisneros, Vinícius Wilian D. Cruzeiro +42 more

Comparison and summary of in silico prediction tools for CYP450-mediated drug metabolism

Drug Discovery Today(2023)10.1016/j.drudis.2023.103728

N/A

0DataRank · unranked

37 citations

Viet Hoang Man, Beihong Ji, Lianjin Cai, Junmei Wang, Jingchen Zhai

Development and test of highly accurate endpoint free energy methods. 2: Prediction of logarithm of n‐octanol–water partition coefficient (logP) for druglike molecules using MM‐PBSA method

Journal of Computational Chemistry(2023)10.1002/jcc.27086

N/A

0DataRank · unranked

30 citations

Tingjun Hou, Xibing He, Viet Hoang Man, Junmei Wang, Yuchen Sun

Development and test of highly accurate endpoint free energy methods. 1: Evaluation of ABCG2 charge model on solvation free energy prediction and optimization of atom radii suitable for more accurate solvation free energy prediction by the PBSA method

Journal of Computational Chemistry(2023)10.1002/jcc.27089

N/A

0DataRank · unranked

21 citations

Xibing He, Tingjun Hou, Lianjin Cai, Viet Hoag Man, Junmei Wang +1 more

In Silico Screening of Natural Flavonoids against 3-Chymotrypsin-like Protease of SARS-CoV-2 Using Machine Learning and Molecular Modeling

Molecules(2023)10.3390/molecules28248034

N/A

0DataRank · unranked

6 citations

Fengyang Han, Beihong Ji, Xibing He, Luxuan Wang, Taoyu Niu +3 more

Unpolarized laser method for infrared spectrum calculation of amide I C O bonds in proteins using molecular dynamics simulation

Computers in Biology and Medicine(2023)10.1016/j.compbiomed.2023.106902

N/A

0DataRank · unranked

5 citations

Xibing He, Phuong H. Nguyen, Celeste Sagui, Christopher Roland, Xiang‐Qun Xie +2 more

Discovery of Potent and Selective CB2 Agonists Utilizing a Function-Based Computational Screening Protocol

ACS Chemical Neuroscience(2023)10.1021/acschemneuro.3c00580

N/A

0DataRank · unranked

5 citations

Beihong Ji, Jiahui Fang, Jiayang Wang, Jing Li, Junmei Wang +1 more

Development and test of highly accurate endpoint free energy methods. 3: partition coefficient prediction using a Poisson–Boltzmann method combined with a solvent accessible surface area model for SAMPL challenges

Physical Chemistry Chemical Physics(2023)10.1039/d3cp04174c

N/A

0DataRank · unranked

4 citations

Xibing He, Fengyang Han, Luxuan Wang, Junmei Wang, Taoyu Niu

Predicting anti-SARS-CoV-2 activities of chemical compounds using machine learning models

Artificial Intelligence Chemistry(2023)10.1016/j.aichem.2023.100029

N/A

0DataRank · unranked

2 citations

Yuhui Wu, Elena N. Thomas, Jocelyn N. Edwards, Xibing He, Junmei Wang +1 more

Toward Predicting Solubility of Arbitrary Solutes in Arbitrary Solvents. 1: Prediction of Density and Refractive Index Using Machine Learning Algorithms with correlation-group parallel feature analysis

ChemRxiv(2023)10.26434/chemrxiv-2023-5dgm9

N/A

0DataRank · unranked

1 citations

Jingchen Zhai, Xiguang Qi, Xibing He, Junmei Wang, Brian Hu

In Situ Formation of Fibronectin‐Enriched Protein Corona on Epigenetic Nanocarrier for Enhanced Synthetic Lethal Therapy

Advanced Science(2024)10.1002/advs.202307940

N/A

0DataRank · unranked

15 citations

Zhuoya Wan, Pengfei Ren, Bei Zhang, Yixian Huang, Raymond E. West +8 more

Advanced Hierarchical Computational Modeling‐Based Rational Development of Platinum (II) Nanocomplex to Improve Lung Cancer Therapy

Advanced Functional Materials(2024)10.1002/adfm.202411334

N/A

0DataRank · unranked

9 citations

Beihong Ji, Yixian Huang, Shichen Li, Zhangyi Luo, Shangyu Chen +9 more

Geometry Optimization Algorithms in Conjunction with the Machine Learning Potential ANI-2x Facilitate the Structure-Based Virtual Screening and Binding Mode Prediction

Biomolecules(2024)10.3390/biom14060648

N/A

0DataRank · unranked

5 citations

Xibing He, Beihong Ji, Fengyang Han, Taoyu Niu, Lianjin Cai +4 more

A human DCC variant causing mirror movement disorder reveals that the WAVE regulatory complex mediates axon guidance by netrin-1–DCC

Science Signaling(2024)10.1126/scisignal.adk2345

N/A

0DataRank · unranked

4 citations

Kai-Yue Zhang, Patricia T. Yam, Yixin Zang, Daniel A. Kramer, Sarah Gagnon +10 more

Effects of All-Atom and Coarse-Grained Molecular Mechanics Force Fields on Amyloid Peptide Assembly: The Case of a Tau K18 Monomer

Journal of Chemical Information and Modeling(2024)10.1021/acs.jcim.4c01448

N/A

0DataRank · unranked

2 citations

Viet Hoang Man, Jie Gao, Junmei Wang, Xibing He

Machine learning and deep learning based scoring functions in deciphering ligand-receptor binding: An application in drug design for GPCRs

Annual reports in computational chemistry(2024)10.1016/bs.arcc.2024.10.001

N/A

0DataRank · unranked

2 citations

Nick X. Wang, Junmei Wang, Taoyu Niu

Editorial: In silico gating mechanism studies and modulator discovery for MscL

Frontiers in Chemistry(2024)10.3389/fchem.2024.1376617

N/A

0DataRank · unranked

0 citations

Paul Blount, Tingjun Hou, Masahiro Sokabe, Junmei Wang

Accurate Free Energy Calculation via Multiscale Simulations Driven by Hybrid Machine Learning and Molecular Mechanics Potentials

Journal of Chemical Theory and Computation(2025)10.1021/acs.jctc.5c00598

N/A

0DataRank · unranked

9 citations

Xiongwu Wu, Bernard R. Brooks, Junmei Wang, Xujian Wang

Rational development of gemcitabine-based nanoplatform for targeting SERPINB9/Granzyme B axis to overcome chemo-immune-resistance

Nature Communications(2025)10.1038/s41467-025-59490-y

N/A

0DataRank · unranked

9 citations

Yiqing Mu, Yixian Huang, Beihong Ji, Yifei Wang, Chien‐Yu Chen +10 more

AI‐Assisted Protein–Peptide Complex Prediction in a Practical Setting

Journal of Computational Chemistry(2025)10.1002/jcc.70137

N/A

0DataRank · unranked

6 citations

Luxuan Wang, Aiqiao Mi, Junmei Wang, Darren Y. Wang

Cytoplasmic PXR regulates glucose metabolism by binding mRNAs and modulating their stability

Nature Structural & Molecular Biology(2025)10.1038/s41594-025-01614-5

N/A

0DataRank · unranked

3 citations

Zehua Wang, Sihan Li, Dhamotharan Pattarayan, Yifei Wang, Jingchen Zhai +11 more

Accurate site-specific folding via conditional diffusion based on AlphaFold3

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2521048122

N/A

0DataRank · unranked

1 citations

Junmei Wang, Haocheng Tang

Accurate Site-specific Folding via Conditional Diffusion Based on Alphafold3

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.06.663385

N/A

0DataRank · unranked

1 citations

Junmei Wang, Haocheng Tang

Intranasal diamorphine population pharmacokinetics modeling and simulation in pediatric breakthrough pain

CPT Pharmacometrics & Systems Pharmacology(2025)10.1002/psp4.13186

N/A

0DataRank · unranked

0 citations

Jingchen Zhai, Beihong Ji, Fengyang Han, Taoyu Niu, Luxuan Wang +2 more

A Full-Spectrum Generative Lead Discovery (FSGLD) Pipeline via DRUG-GAN: A Multiscale Method for Drug-like/Target-specific Compound Library Generation

Research Square(2025)10.21203/rs.3.rs-6516504/v1

N/A

0DataRank · unranked

0 citations

Beihong Ji, Matthew Brock, Yuhui Wu, Yuemin Bian, Xibing He +1 more

Editorial: Exploring molecular recognition: integrating experimental and computational approaches

Frontiers in Molecular Biosciences(2025)10.3389/fmolb.2025.1637793

N/A

0DataRank · unranked

0 citations

António Rego, Junmei Wang, Tarsila G. Castro, Teresa Matamá

Optimization of Lennard–Jones Parameters for Induced Dipole Polarizable Gaussian Multipole Force Field

The Journal of Physical Chemistry B(2025)10.1021/acs.jpcb.5c05129

N/A

0DataRank · unranked

0 citations

Junmei Wang, Zhen Huang, Ray Luo, Piotr Cieplak, Yong Duan +1 more

Aberrant S293 Phosphorylation Drives Oligomerization of Tau Repeat R2: Insights from Molecular Dynamics Simulations

ACS Chemical Neuroscience(2025)10.1021/acschemneuro.5c00734

N/A

0DataRank · unranked

0 citations

Xibing He, Phuong H. Nguyen, Jie Gao, Junmei Wang, Viet Hoang Man

Cryo-EM Structure of the Human Cannabinoid Receptor CB2-Gi Signaling Complex

Cell(2020)10.1016/j.cell.2020.01.007

N/A

0DataRank · unranked

253 citations

Youwen Zhuang, Ting-Hai Xu, Zhiwei Feng, X. Edward Zhou, Maozi Chen +12 more