Alex Dickson

Also affiliated with University of Strathclyde, Royal Holloway University of London, Cockcroft Institute, Sci-Tech Daresbury, Michigan State University

Biochemistry, Genetics and Molecular BiologyComputer ScienceMaterials SciencePhysics and Astronomy

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 22 papers. Top paper: “Predicting the structural basis of targeted protein degradation by integrating molecular dynamics simulations with structural mass spectrometry”.

Predicting the structural basis of targeted protein degradation by integrating molecular dynamics simulations with structural mass spectrometry

Nature Communications(2022)10.1038/s41467-022-33575-4

N/A

0.698DataRank · unranked

104 citations

Derek MacPherson, Barmak Mostofian, Taras Dauzhenka, Samuel Lotz, T. Dwight McGee +28 more

On Calculating Free Energy Differences Using Ensembles of Transition Paths

Frontiers in Molecular Biosciences(2020)10.3389/fmolb.2020.00106

N/A

0DataRank · unranked

45 citations

Tom Dixon, Alex Dickson, Robert M. Hall

Enhanced Jarzynski free energy calculations using weighted ensemble

The Journal of Chemical Physics(2020)10.1063/5.0020600

N/A

0DataRank · unranked

8 citations

Alex Dickson, Nicole Roussey

Membrane-Mediated Ligand Unbinding of the PK-11195 Ligand from TSPO

Biophysical Journal(2020)10.1016/j.bpj.2020.11.015

N/A

0DataRank · unranked

44 citations

Arzu Uyar, Shelagh Ferguson‐Miller, Alex Dickson, Tom Dixon

Membrane-mediated ligand unbinding of the PK-11195 ligand from TSPO

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.21.914127

N/A

0DataRank · unranked

5 citations

Arzu Uyar, Shelagh Ferguson-Miller, Alex Dickson, Tom Dixon

Quality over quantity: Sampling high probability rare events with the weighted ensemble algorithm

Journal of Computational Chemistry(2022)10.1002/jcc.27054

N/A

0DataRank · unranked

6 citations

Alex Dickson, Nicole Roussey

Local Ion Densities can Influence Transition Paths of Molecular Binding

Frontiers in Molecular Biosciences(2022)10.3389/fmolb.2022.858316

N/A

0DataRank · unranked

5 citations

Alex Dickson, Nicole Roussey

FLEXIBLE TOPOLOGY: A NEW METHOD FOR DYNAMIC DRUG DESIGN

ChemRxiv(2022)10.26434/chemrxiv-2022-g7src

N/A

0DataRank · unranked

1 citations

Nicole Roussey, Samik Bose, Alex Dickson, Nazanin Donyapour

Quality over quantity: Sampling high probability rare events with the Weighted Ensemble algorithm

ChemRxiv(2022)10.26434/chemrxiv-2022-25jxb

N/A

0DataRank · unranked

0 citations

Alex Dickson, Nicole Roussey

How Robust Is the Ligand Binding Transition State?

Journal of the American Chemical Society(2023)10.1021/jacs.3c08940

N/A

0DataRank · unranked

14 citations

Samuel Lotz, Indrajit Deb, Megan Shuck, Kin Sing Stephen Lee, Alex Dickson +1 more

Adrenomedullin 2/intermedin is a slow off-rate, long-acting endogenous agonist of the adrenomedullin2 G protein–coupled receptor

Journal of Biological Chemistry(2023)10.1016/j.jbc.2023.104785

N/A

0DataRank · unranked

12 citations

Jordan A. Karim, Peyton H. Gordon, James Lennon, Alex Dickson, Augen A. Pioszak +1 more

The Small Molecule Antagonist KCI807 Disrupts Association of the Amino-Terminal Domain of the Androgen Receptor with ELK1 by Modulating the Adjacent DNA Binding Domain

Molecular Pharmacology(2023)10.1124/molpharm.122.000589

N/A

0DataRank · unranked

3 citations

Charles Ducker, Naeyma N. Islam, Seongho Kim, Sally Yurgelevic, Nathan I. Nicely +7 more

Flexible Topology: A Dynamic Model of a Continuous Chemical Space

Journal of Chemical Theory and Computation(2023)10.1021/acs.jctc.3c00409

N/A

0DataRank · unranked

3 citations

Fatemeh Fathi Niazi, Nicole Roussey, Samik Bose, Alex Dickson, Nazanin Donyapour

Adrenomedullin 2/intermedin is a slow off-rate, long-acting endogenous agonist of the adrenomedullin 2 G protein-coupled receptor

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.13.523955

N/A

0DataRank · unranked

1 citations

Jordan A. Karim, Peyton H. Gordon, James Lennon, Alex Dickson, Augen A. Pioszak +1 more

How robust is the ligand binding transition state?

ChemRxiv(2023)10.26434/chemrxiv-2023-n6lk7

N/A

0DataRank · unranked

1 citations

Samuel Lotz, Indrajit Deb, Megan Shuck, Kin Sing Stephen Lee, Alex Dickson +1 more

Flexible Topology: A new method for dynamic drug design

ChemRxiv(2023)10.26434/chemrxiv-2022-g7src-v2

N/A

0DataRank · unranked

0 citations

Fatemeh Fathi Niazi, Nicole Roussey, Samik Bose, Alex Dickson, Nazanin Donyapour

Markov State Models with Weighted Ensemble Simulation: How to Eliminate the Trajectory Merging Bias

ChemRxiv(2024)10.26434/chemrxiv-2024-z17mb

N/A

0DataRank · unranked

1 citations

Ceren Kılınç, Alex Dickson, Samik Bose

AGDIFF: Attention-Enhanced Diffusion for Molecular Geometry Prediction

Journal of Chemical Information and Modeling(2025)10.1021/acs.jcim.4c01896

N/A

0DataRank · unranked

5 citations

Fatemeh Fathi Niazi, Alex Dickson, André Brasil Vieira Wyzykowski

Undirected Exploration of Binding Pockets with Flexible Topology

Journal of Chemical Theory and Computation(2025)10.1021/acs.jctc.5c00825

N/A

0DataRank · unranked

1 citations

S. F. Yoon, Khadim Mbacke, Alex Dickson, Fatemeh Fathi Niazi

Undirected exploration of binding pockets with Flexible Topology

ChemRxiv(2025)10.26434/chemrxiv-2025-g55jj

N/A

0DataRank · unranked

0 citations

S. F. Yoon, Khadim Mbacke, Alex Dickson, Fatemeh Fathi Niazi

The SAMPL6 SAMPLing challenge: assessing the reliability and efficiency of binding free energy calculations

Journal of Computer-Aided Molecular Design(2020)10.1007/s10822-020-00290-5

N/A

0DataRank · unranked

136 citations

Travis Jensen, David R. Slochower, Matteo Aldeghi, Vytautas Gapsys, Dimitris Ntekoumes +12 more

The Small Molecule Antagonist KCI807 Disrupts Association of the Amino-terminal Domain of the Androgen Receptor with ELK1 by Modulating the Adjacent DNA Binding Domain

UNC Libraries(2025)10.17615/kvka-ke79

N/A

0DataRank · unranked

0 citations

Claire Soave, Nathan I. Nicely, Naeyma N. Islam, Yanfang Huang, Charles Ducker +7 more