Marco Salemi

Immunology and MicrobiologyBiochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 31 papers. Top paper: “A minor population of macrophage-tropic HIV-1 variants is identified in recrudescing viremia following analytic treatment interruption”.

A minor population of macrophage-tropic HIV-1 variants is identified in recrudescing viremia following analytic treatment interruption

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.1917034117

N/A

1.8DataRank · unranked

75 citations

Carla Mavian, Dunja Z. Babič, Thaissa Isaias Cordeiro, Mark Sharkey, Logan Barrios +11 more

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2007295117

N/A

0.665DataRank · unranked

83 citations

Sergei L. Kosakovsky Pond, Simone Marini, Brittany Rife Magalis, Anne–Mieke Vandamme, Simon Dellicour +31 more

Phyloanatomic characterization of the distinct T cell and monocyte contributions to the peripheral blood HIV population within the host

Virus Evolution(2020)10.1093/ve/veaa005

N/A

0.360DataRank · unranked

9 citations

Samantha L. Strickland, Stephen D. Shank, Patrick Autissier, Alexandra Schuetz, Pasiri Sithinamsuwan +11 more

CSF1R inhibition depletes brain macrophages and reduces brain virus burden in SIV-infected macaques

Brain(2024)10.1093/brain/awae153

N/A

0.345DataRank · unranked

9 citations

Laurent Zablocki-Thomas, Evan S Leung, Jinbum K Dupont, Julian B. Hattler, Jolanta Kowalewska +8 more

SARITA: a large language model for generating the S1 subunit of the SARS-CoV-2 spike protein

Briefings in Bioinformatics(2025)10.1093/bib/bbaf384

N/A

0.330DataRank · unranked

8 citations

Giovanna Nicora, Laura Bergomi, Tommaso Mario Buonocore, Daniel M. Czyż, Enea Parimbelli +5 more

A Thermostable Cas12b from Brevibacillus Leverages One-pot Detection of SARS-CoV-2 Variants of Concern

medRxiv(2021)10.1101/2021.10.15.21265066

N/A

0.269DataRank · unranked

5 citations

Nicolas C. Macaluso, Brianna L.M. Pizzano, Melanie N. Cash, Jan Špaček, Jan Karásek +4 more

Infectivity of three Mayaro Virus geographic isolates in human cell lines

Acta Tropica(2023)10.1016/j.actatropica.2023.106894

N/A

0.165DataRank · unranked

2 citations

Melissa Dulcey, Nabil Abid, Melanie N. Cash, Jordan Dailey, Marco Salemi +3 more

Machine Learning Prediction and Phyloanatomic Modeling of Viral Neuroadaptive Signatures in the Macaque Model of HIV-Mediated Neuropathology

Microbiology Spectrum(2023)10.1128/spectrum.03086-22

N/A

0.104DataRank · unranked

1 citations

David A. Ostrov, Marco Salemi, Simone Marini, Brittany Rife Magalis, Andrea S. Ramirez-Mata

Optimizing viral genome subsampling by genetic diversity and temporal distribution (TARDiS) for phylogenetics

Bioinformatics(2021)10.1093/bioinformatics/btab725

N/A

0DataRank · unranked

17 citations

Carla Mavian, Alberto Riva, Mattia Prosperi, Marco Salemi, Brittany Rife Magalis +1 more

Persistent HIV-1 transcription in CD4+ T cells from ART-suppressed individuals can originate from biologically competent proviruses

Journal of Virus Eradication(2021)10.1016/j.jve.2021.100053

N/A

0DataRank · unranked

5 citations

Viviane M. Andrade, M. Noguera, Christian Brander, Carla Mavian, Marco Salemi +4 more

Predator-Prey Dynamics of Intra-Host Simian Immunodeficiency Virus Evolution Within the Untreated Host

Frontiers in Immunology(2021)10.3389/fimmu.2021.709962

N/A

0DataRank · unranked

4 citations

Patrick Autissier, Kenneth C. Williams, Xinguang Chen, Cameron J. Browne, Marco Salemi +1 more

Causal AI with Real World Data: Do Statins Protect from Alzheimer's Disease Onset?

PubMed(2021)10.1145/3472813.3473206

N/A

0DataRank · unranked

4 citations

Shantanu Ghosh, Zhaoyi Chen, Marco Salemi, Tianchen Lyu, Jinying Zhao +2 more

Predicting emerging SARS-CoV-2 variants of concern through a One Class dynamic anomaly detection algorithm

BMJ Health & Care Informatics(2022)10.1136/bmjhci-2022-100643

N/A

0DataRank · unranked

17 citations

Marco Salemi, Simone Marini, Riccardo Bellazzi, Giovanna Nicora

Molecular Basis of the Toxigenic Vibrio cholerae O1 Serotype Switch from Ogawa to Inaba in Haiti

Microbiology Spectrum(2022)10.1128/spectrum.03624-22

N/A

0DataRank · unranked

12 citations

Melanie N. Cash, Massimiliano S. Tagliamonte, Afsar Ali, J. Glenn Morris, Marco Salemi +2 more

Development of a monoclonal antibody to a vibriophage as a proxy for Vibrio cholerae detection

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.08.487661

N/A

0DataRank · unranked

0 citations

Taylor K. Paisie, Meer T. Alam, Afsar Ali, Andrew Camilli, Jens Wrammert +6 more

Defective HIV DNA genomes provide ancestral relevance critical for phylogenetic inference of reservoir dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.04.490630

N/A

0DataRank · unranked

0 citations

Andrea S Ramirez-Mata, Melanie N. Cash, Jose Estrada, Stephen D. Shank, Adam Browning +5 more

Machine learning prediction and phyloanatomic modeling of viral neuroadaptive signatures in the macaque model of HIV-mediated neuropathology

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.17.496109

N/A

0DataRank · unranked

0 citations

David A. Ostrov, Marco Salemi, Simone Marini, Brittany Rife Magalis, Andrea S. Ramirez-Mata

Forecasting dominance of SARS-CoV-2 lineages by anomaly detection using deep AutoEncoders

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.24.563721

N/A

0DataRank · unranked

1 citations

Giovanna Nicora, Mattia Prosperi, Riccardo Bellazzi, Marco Salemi, Simone Marini +1 more

Forecasting dominance of SARS-CoV-2 lineages by anomaly detection using deep AutoEncoders

Briefings in Bioinformatics(2024)10.1093/bib/bbae535

N/A

0DataRank · unranked

14 citations

Giovanna Nicora, Mattia Prosperi, Riccardo Bellazzi, Marco Salemi, Simone Marini +1 more

Novel insights on unraveling dynamics of transmission clusters in outbreaks using phylogeny-based methods

Infection Genetics and Evolution(2024)10.1016/j.meegid.2024.105661

N/A

0DataRank · unranked

3 citations

Alberto Riva, Simone Marini, Marco Salemi, Mattia Prosperi, Brittany Rife Magalis

A comparative analysis of the role of containment policies, vaccination strategies and virus variants in the COVID-19 pandemic across nine European countries

Scientific Reports(2025)10.1038/s41598-025-10132-9

N/A

0DataRank · unranked

4 citations

Giovanna Nicora, Enea Parimbelli, Marco Salemi, Riccardo Bellazzi, Daniele Pala +1 more

Dynamic Networks of Methicillin-Resistant Staphylococcus aureus in Communities Drive Hospital Transmission

Open Forum Infectious Diseases(2025)10.1093/ofid/ofaf264

N/A

0DataRank · unranked

2 citations

Massimiliano S. Tagliamonte, Carla Mavian, Nicole M. Iovine, Yuting Zhai, Kwangcheol Casey Jeong +5 more

Collection of SARS-CoV-2 Virus from the Air of a Clinic within a University Student Health Care Center and Analyses of the Viral Genomic Sequence

Aerosol and Air Quality Research(2020)10.4209/aaqr.2020.05.0202

N/A

0DataRank · unranked

111 citations

Sripriya Nannu Shankar, Maha A. Elbadry, Julia C. Gibson, Md. Mahbubul Alam, Caroline J. Stephenson +7 more

WITHDRAWN: Defective HIV DNA genomes provide ancestralrelevance critical for phylogenetic inference of reservoir dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.03.680205

N/A

0DataRank · unranked

0 citations

Andrea S. Ramirez-Mata, Melanie N. Cash, Jose L. Estrada, Stephen D. Shank, A. Browning +5 more

Collection of SARS-CoV-2 Virus from the Air of a Clinic within a University Student Health Care Center and Analyses of the Viral Genomic Sequence

Aerosol and Air Quality Research(2020)10.4209/aaqr.2020.02.0202

N/A

0DataRank · unranked

94 citations

Sripriya Nannu Shankar, Maha A. Elbadry, Julia C. Gibson, Md. Mahbubul Alam, Caroline J. Stephenson +7 more

Toxigenic Vibrio cholerae evolution and establishment of reservoirs in aquatic ecosystems

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.1918763117

N/A

0DataRank · unranked

56 citations

Taylor K. Paisie, Meer T. Alam, Cameron J. Browne, Valéry Madsen Beau De Rochars, Stefano Nembrini +7 more

Differing impacts of global and regional responses on SARS-CoV-2 transmission cluster dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.06.370999

N/A

0DataRank · unranked

7 citations

Andrea S. Ramirez-Mata, Anna Zhukova, Carla Mavian, Simone Marini, Frédéric Lemoine +4 more

Brain tissue transcriptomic analysis of SIV-infected macaques identifies Poly (ADP-ribose) polymerases (PARPs) as potential biomarkers for neuropathogenesis.

(2020)10.21203/rs.3.rs-30629/v1

N/A

0DataRank · unranked

0 citations

Andrea S. Ramirez-Mata, James J. Dollar, David J. Nolan, Shannan N. Rich, Kevin White +9 more

Brain tissue transcriptomic analysis of SIV-infected macaques identifies several altered metabolic pathways linked to neuropathogenesis, and Poly (ADP-ribose) polymerases (PARPs) as potential therapeutic targets

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.21.109140

N/A

0DataRank · unranked

0 citations

Andrea S. Ramirez-Mata, James J. Dollar, David J. Nolan, Kevin White, Shannan N. Rich +9 more

Unexpected Maintenance of Hepatitis C Viral Diversity following Liver Transplantation

UNC Libraries(2020)10.17615/tgms-5z12

N/A

0DataRank · unranked

0 citations

Marco Salemi, Nazle Mendonça Collaço Véras, Maureen M. Goodenow, Oliver Pybus, Rebecca Gray +4 more

Orthobunyaviruses in the Caribbean: Melao and Oropouche virus infections in school children in Haiti in 2014

PLoS neglected tropical diseases(2021)10.1371/journal.pntd.0009494

N/A

0DataRank · unranked

26 citations

Ricardo Durães‐Carvalho, Gabriela M. Blohm, Caroline J. Stephenson, Julia C. Loeb, Sarah K. White +7 more