Marco Antônio Oliva

Also affiliated with University of Florida, Institut Català d'Oncologia, Nvidia (United States), Ministerio de Salud Pública y Bienestar Social

Agricultural and Biological SciencesBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 15 papers. Top paper: “Portable nanopore analytics: are we there yet?”.

Portable nanopore analytics: are we there yet?

Bioinformatics(2020)10.1093/bioinformatics/btaa237

N/A

1.1DataRank · unranked

27 citations

Franco Milicchio, Kaden King, Grace Benson, Christina Boucher, Mattia Prosperi +1 more

Re 2 Pair: Increasing the Scalability of RePair by Decreasing Memory Usage

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.11.603142

N/A

0.145DataRank · unranked

1 citations

Rahul Varki, Marco Antônio Oliva, Christina Boucher, J.H. Kim

MONI: A Pangenomics Index for Finding MEMs

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.06.451246

N/A

0DataRank · unranked

6 citations

Marco Antônio Oliva, Ben Langmead, Travis Gagie, Christina Boucher, Massimiliano Rossi

Efficiently Merging r-indexes

CINECA IRIS Institutial research information system (University of Pisa)(2021)10.1109/dcc50243.2021.00028

N/A

0DataRank · unranked

1 citations

Massimiliano Rossi, Jouni Sirén, Giovanni Manzini, Tamer Kahveci, Travis Gagie +2 more

Target-enriched long-read sequencing (TELSeq) contextualizes antimicrobial resistance genes in metagenomes

Microbiome(2022)10.1186/s40168-022-01368-y

N/A

0DataRank · unranked

26 citations

Marco Antônio Oliva, Jonathen Settle, Lidiya V. Zyskina, Mattia Prosperi, Christina Boucher +2 more

AMR-meta: a k-mer and metafeature approach to classify antimicrobial resistance from high-throughput short-read metagenomics data

GigaScience(2022)10.1093/gigascience/giac029

N/A

0DataRank · unranked

18 citations

Marco Antônio Oliva, Ilya B. Slizovskiy, Rishabh A Das, Noelle Noyes, Tamer Kahveci +3 more

CSTs for Terabyte-Sized Data

PubMed(2022)10.1109/dcc52660.2022.00017

N/A

0DataRank · unranked

4 citations

Davide Cenzato, Massimiliano Rossi, Zsuzsanna Lipták, Travis Gagie, Christina Boucher +1 more

Recursive Prefix-Free Parsing for Building Big BWTs

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.18.524557

N/A

0DataRank · unranked

2 citations

Travis Gagie, Christina Boucher, Marco Antônio Oliva

Acceleration of FM-index Queries Through Prefix-free Parsing

arXiv (Cornell University)(2023)10.48550/arxiv.2305.05893

N/A

0DataRank · unranked

0 citations

Marco Antônio Oliva, Dominik Köppl, Hideo Bannai, Christina Boucher, Travis Gagie +1 more

Acceleration of FM-index Queries Through Prefix-free Parsing.

(2023)10.4230/lipics.wabi.2023.13

N/A

0DataRank · unranked

0 citations

Marco Antônio Oliva, Dominik Köppl, Hideo Bannai, Christina Boucher, Travis Gagie +1 more

Building a pangenome alignment index via recursive prefix-free parsing

iScience(2024)10.1016/j.isci.2024.110933

N/A

0DataRank · unranked

5 citations

Marco Antônio Oliva, Travis Gagie, Christina Boucher, Eddie Ferro

ONeSAMP 3.0: estimation of effective population size via single nucleotide polymorphism data from one population

G3 Genes Genomes Genetics(2024)10.1093/g3journal/jkae153

N/A

0DataRank · unranked

7 citations

Rebecca G. Cheek, Suhashi Nihara De Silva, Kingshuk Mukherjee, Isha Yooseph, Marco Antônio Oliva +5 more

Pfp-fm: an accelerated FM-index

Algorithms for Molecular Biology(2024)10.1186/s13015-024-00260-8

N/A

0DataRank · unranked

6 citations

Marco Antônio Oliva, Dominik Köppl, Hideo Bannai, Christina Boucher, Travis Gagie +1 more

Accurate short-read alignment throughr-index-based pangenome indexing

Genome Research(2025)10.1101/gr.279858.124

N/A

0DataRank · unranked

4 citations

Massimiliano Rossi, Eddie Ferro, Marco Antônio Oliva, Erik Garrison, Ben Langmead +2 more

Exploring Prediction of Antimicrobial Resistance Based on Protein Solvent Accessibility Variation

Frontiers in Genetics(2021)10.3389/fgene.2021.564186

N/A

0DataRank · unranked

5 citations

Marco Antônio Oliva, Ilya B. Slizovskiy, Noelle Noyes, Christina Boucher, Mattia Prosperi +1 more