🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Piotr Cieplak

Sanford Burnham Prebys Medical Discovery Institute

ORCID: 0000-0003-0700-5691

Also affiliated with Discovery Institute, Torrey Pines Institute For Molecular Studies

Biochemistry, Genetics and Molecular BiologyPhysics and AstronomyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 15 papers. Top paper: “S-Nitrosylation of p62 Inhibits Autophagic Flux to Promote α-Synuclein Secretion and Spread in Parkinson's Disease and Lewy Body Dementia”.

S-Nitrosylation of p62 Inhibits Autophagic Flux to Promote α-Synuclein Secretion and Spread in Parkinson's Disease and Lewy Body Dementia

Journal of Neuroscience(2022)10.1523/jneurosci.1508-21.2022
N/A
2.2DataRank · unranked
53 citations

Nima Dolatabadi, Piotr Cieplak, Maria T. Diaz-Meco, Jorge Moscat, John P. Nolan +3 more

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

Journal of the American Chemical Society(1995)10.1021/ja00124a002
N/A
1.4DataRank · unranked
13111 citations

Piotr Cieplak, Christopher I. Bayly, Ian R. Gould, Kenneth M. Merz, David M. Ferguson +5 more

A well-behaved electrostatic potential based method using charge restraints for deriving atomic charges: the RESP model

The Journal of Physical Chemistry(1993)10.1021/j100142a004
N/A
1.3DataRank · unranked
8019 citations

Piotr Cieplak, Peter A. Kollman, Wendy D. Cornell, Christopher I. Bayly

Quantitative profiling of protease specificity

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008101
N/A
0DataRank · unranked
18 citations

Piotr Cieplak, Albert G. Remacle, Elise Nguyen, Jeffrey W. Smith, Boris I. Ratnikov

Toxoplasma gondii serine hydrolases regulate parasite lipid mobilization during growth and replication within the host

Cell chemical biology(2021)10.1016/j.chembiol.2021.05.001
N/A
0DataRank · unranked
9 citations

Brett M. Babin, Markus Lakemeyer, Ian T. Foe, Neri Amara, Stephanie M. Terrell +6 more

Stress tensor and constant pressure simulation for polarizable Gaussian multipole model

The Journal of Chemical Physics(2022)10.1063/5.0082548
N/A
0DataRank · unranked
18 citations

Piotr Cieplak, Yong Duan, Ray Luo, Haixin Wei

Accurate Reproduction of Quantum Mechanical Many-Body Interactions in Peptide Main-Chain Hydrogen-Bonding Oligomers by the Polarizable Gaussian Multipole Model

Journal of Chemical Theory and Computation(2022)10.1021/acs.jctc.2c00710
N/A
0DataRank · unranked
17 citations

Haixin Wei, Piotr Cieplak, Yong Duan, Ray Luo, Shiji Zhao

Transferability of the Electrostatic Parameters of the Polarizable Gaussian Multipole Model

Journal of Chemical Theory and Computation(2023)10.1021/acs.jctc.2c01048
N/A
0DataRank · unranked
15 citations

Piotr Cieplak, Yong Duan, Ray Luo, Shiji Zhao

Optimal Scheme to Achieve Energy Conservation in Induced Dipole Models

Journal of Chemical Theory and Computation(2023)10.1021/acs.jctc.3c00226
N/A
0DataRank · unranked
12 citations

Shiji Zhao, Piotr Cieplak, Yong Duan, Ray Luo, Haixin Wei +1 more

Streamlining and Optimizing Strategies of Electrostatic Parameterization

Journal of Chemical Theory and Computation(2023)10.1021/acs.jctc.3c00659
N/A
0DataRank · unranked
11 citations

Yongxian Wu, Shiji Zhao, Piotr Cieplak, Yong Duan, Ray Luo +1 more

Assessment of Amino Acid Electrostatic Parametrizations of the Polarizable Gaussian Multipole Model

Journal of Chemical Theory and Computation(2024)10.1021/acs.jctc.3c01347
N/A
0DataRank · unranked
8 citations

Piotr Cieplak, Yong Duan, Ray Luo, Shiji Zhao

CaXML: Chemistry‐informed machine learning explains mutual changes between protein conformations and calcium ions in calcium‐binding proteins using structural and topological features

Protein Science(2025)10.1002/pro.70023
N/A
0DataRank · unranked
2 citations

Jules Nde, Yossi Eliaz, Nathaniel Jennings, Piotr Cieplak, Margaret S. Cheung +1 more

Optimization of Lennard–Jones Parameters for Induced Dipole Polarizable Gaussian Multipole Force Field

The Journal of Physical Chemistry B(2025)10.1021/acs.jpcb.5c05129
N/A
0DataRank · unranked
0 citations

Junmei Wang, Zhen Huang, Ray Luo, Piotr Cieplak, Yong Duan +1 more

Epitope-resolved profiling of the SARS-CoV-2 antibody response identifies cross-reactivity with an endemic human CoV

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.27.222943
N/A
0DataRank · unranked
21 citations

Sierra N. Henson, Annalee S. Boyle, Anna Engelbrektson, Zane Fink, Fatima Rahee +17 more

Toxoplasma gondii serine hydrolases regulate parasite lipid mobilization during growth and replication within the host

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.24.396663
N/A
0DataRank · unranked
0 citations

Brett M. Babin, Markus Lakemeyer, Ian T. Foe, Neri Amara, Stephanie M. Terrell +6 more