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CaXML: Chemistry‐informed machine learning explains mutual changes between protein conformations and calcium ions in calcium‐binding proteins using structural and topological features

Protein Science(2025)10.1002/pro.70023Source: DataRank Database

CaXML: Chemistry‐informed machine learning explains mutual changes between protein conformations and calcium ions in calcium‐binding proteins using structural and topological features is a research paper published in Protein Science (2025). On theSindex it has a DataRank of 0. It has been cited 2 times.

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Open Access2 citations

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Enrichment:Funding (4 grants)Impact (FWCI 1.54)OA: hybridTopics (42)IDs (PubMed, PMC, OpenAlex)Annotations (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (6)

Jules Nde ORCID,Yossi Eliaz ORCID,Nathaniel Jennings,Piotr Cieplak ORCID,Margaret S. Cheung ORCID

Live enrichment

PubMed:39865355 PMC:PMC11761698 OpenAlex:https://openalex.org/W4406823972

National Institutes of Health

Grant: 2R01GM097553

National Science Foundation

Grant: MCB 2221824

National Science Foundation

Grant: 2221824

Emergent Protein Assemblies in Cytoplasm

National Institutes of Health

Grant: 5R01GM097553-08

Principles for Tuning Target Selectivity in Signaling Proteins

FWCI

1.54

Citation Percentile

0.8%

Citation Trend

2025

hybridLicense: cc-by-nc-nd

journalhttps://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/pro.70023

publisherhttps://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/pro.70023

publisherhttps://onlinelibrary.wiley.com/doi/pdf/10.1002/pro.70023

journalhttps://doi.org/10.1002/pro.70023

repositoryhttps://pubmed.ncbi.nlm.nih.gov/39865355

Fields of Study

Computational Drug Discovery MethodsProtein Structure and DynamicsRNA and protein synthesis mechanisms0206 medical engineering02 engineering and technologyMachine LearningCalciumCalcium-Binding ProteinsProtein ConformationModels, MolecularAlgorithms

MeSH Terms

Machine LearningAlgorithmsCalciumCalcium-Binding ProteinsModels, MolecularProtein Conformation

Keywords

CalciumChemistryIonIonic bondingCalcium-binding proteinCalcium signalingEF handChemical physicsBiophysicsMachine learningTopology (electrical circuits)Computer scienceBiologyCalmodulinGraph theoryCalcium‐binding ProteinIon Charge StateMachine Learning ExplanationEf‐hand MotifMany‐body InteractionsModels, MolecularProtein ConformationCalcium-Binding ProteinsAlgorithmsResearch Article