🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Jonathan E. Pekar

Broad Institute

ORCID: 0000-0003-0977-2886

Also affiliated with University of California San Diego, University of Edinburgh

MedicineMathematicsEconomics, Econometrics and FinanceBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 13 papers. Top paper: “Detection of SARS-CoV-2 intra-host recombination during superinfection with Alpha and Epsilon variants in New York City”.

Detection of SARS-CoV-2 intra-host recombination during superinfection with Alpha and Epsilon variants in New York City

Nature Communications(2022)10.1038/s41467-022-31247-x

N/A

2.1DataRank · unranked

46 citations

Jade Wang, Mindy Leelawong, Darren P. Martin, Jennifer L. Havens, Moinuddin A. Chowdhury +19 more

The Huanan Seafood Wholesale Market in Wuhan was the early epicenter of the COVID-19 pandemic

Science(2022)10.1126/science.abp8715

N/A

0.913DataRank · unranked

439 citations

Joshua I. Levy, Lorena M. Malpica Serrano, Alexander Crits‐Christoph, Jonathan E. Pekar, Stephen A. Goldstein +13 more

Random-Effects Substitution Models for Phylogenetics via Scalable Gradient Approximations

Systematic Biology(2024)10.1093/sysbio/syae019

N/A

0.345DataRank · unranked

9 citations

Andrew J. Holbrook, Jonathan E. Pekar, Itzue W. Caviedes-Solis, Frederick A. Matsen, Guy Baele +5 more

Recently reported SARS-CoV-2 genomes suggested to be intermediate between the two early main lineages are instead likely derived

Virus Evolution(2025)10.1093/ve/veaf008

N/A

0.269DataRank · unranked

5 citations

Niema Moshiri, Philippe Lemey, Alexander Crits‐Christoph, Florence Débarre, Stephen A. Goldstein +6 more

Dynamics of natural selection preceding human viral epidemics and pandemics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.26.640439

N/A

0.165DataRank · unranked

2 citations

Sergei L. Kosakovsky Pond, Jordan D. Zehr, Jonathan E. Pekar, Edyth Parker, Michael Worobey +3 more

Random-effects substitution models for phylogenetics via scalable gradient approximations

arXiv (Cornell University)(2023)10.48550/arxiv.2303.13642

N/A

0DataRank · unranked

0 citations

Andrew J. Holbrook, Jonathan E. Pekar, Itzue W. Caviedes-Solis, Fredrick A. Matsen, Guy Baele +5 more

Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic

Cell(2024)10.1016/j.cell.2024.08.010

N/A

0DataRank · unranked

89 citations

Joshua I. Levy, Jonathan E. Pekar, Stephen A. Goldstein, Reema Singh, Zach Hensel +18 more

The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2

Cell(2025)10.1016/j.cell.2025.03.035

N/A

0DataRank · unranked

24 citations

Spyros Lytras, Mahan Ghafari, Andrew F. Magee, Edyth Parker, Yu Wang +14 more

The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.12.548617

N/A

0DataRank · unranked

12 citations

Spyros Lytras, Mahan Ghafari, Andrew F. Magee, Edyth Parker, Jennifer L. Havens +11 more

Timing the SARS-CoV-2 Index Case in Hubei Province

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.20.392126

N/A

0DataRank · unranked

18 citations

Michael Worobey, Niema Moshiri, Konrad Scheffler, Joel O. Wertheim, Jonathan E. Pekar

The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2

Science(2022)10.1126/science.abp8337

N/A

0DataRank · unranked

251 citations

Andrew F. Magee, Edyth Parker, Niema Moshiri, Katherine Izhikevich, Jennifer L. Havens +24 more

Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.13.557637

N/A

0DataRank · unranked

13 citations

Joshua I. Levy, Jonathan E. Pekar, Stephen A. Goldstein, Reema Singh, Zach Hensel +17 more

The emergence of SARS-CoV-2 in Europe and North America

Science(2020)10.1126/science.abc8169

N/A

0DataRank · unranked

429 citations

Jonathan E. Pekar, Brendan B. Larsen, Martha I. Nelson, Verity Hill, Jeffrey B. Joy +5 more