🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Raktim Mitra

University of Southern California

ORCID: 0000-0003-1182-3742

Also affiliated with University of Washington, Protein Research Foundation

Biochemistry, Genetics and Molecular BiologySocial SciencesComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile
1.2Author DataRank

Indexed papers

3in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

DNAproDB: an updated database for the automated and interactive analysis of protein–DNA complexes

Nucleic Acids Research(2024)10.1093/nar/gkae970
Top 24%
0.848DataRank
Top 24%38 citations

Ari S Cohen, Jared M. Sagendorf, Helen M. Berman, Remo Rohs, Raktim Mitra

Papers

Driven by 10 papers — median percentile 64. Top paper: “DNAproDB: an updated database for the automated and interactive analysis of protein–DNA complexes”.

DNAproDB: an updated database for the automated and interactive analysis of protein–DNA complexes

Nucleic Acids Research(2024)10.1093/nar/gkae970
Top 24%
0.848DataRank
Top 24%38 citations

Ari S Cohen, Jared M. Sagendorf, Helen M. Berman, Remo Rohs, Raktim Mitra

Geometric deep learning of protein–DNA binding specificity

Nature Methods(2024)10.1038/s41592-024-02372-w
N/A
0.635DataRank · unranked
68 citations

Jinsen Li, Jared M. Sagendorf, Yibei Jiang, Ari S Cohen, Tsu-Pei Chiu +3 more

Structure-based prediction of protein-nucleic acid binding using graph neural networks

Biophysical Reviews(2024)10.1007/s12551-024-01201-w
N/A
0.470DataRank · unranked
22 citations

Raktim Mitra, Jiawei Huang, Xiaojiang S. Chen, Remo Rohs, Jared M. Sagendorf

RNAscape: geometric mapping and customizable visualization of RNA structure

Nucleic Acids Research(2024)10.1093/nar/gkae269
N/A
0.442DataRank · unranked
8 citations

Ari S Cohen, Remo Rohs, Raktim Mitra

RNAproDB: A Webserver and Interactive Database for Analyzing Protein–RNA Interactions

Journal of Molecular Biology(2025)10.1016/j.jmb.2025.169012
Top 48%
0.377DataRank
Top 48%8 citations

Ari S Cohen, Wei Yu Tang, Hirad Hosseini, Yongchan Hong, Helen M. Berman +2 more

Probing the role of the protonation state of a minor groove-linker histidine in Exd-Hox–DNA binding

Biophysical Journal(2023)10.1016/j.bpj.2023.12.013
N/A
0.345DataRank · unranked
9 citations

Tsu-Pei Chiu, Raktim Mitra, Remo Rohs, Yibei Jiang

PNAbind: Structure-based prediction of protein-nucleic acid binding using graph neural networks

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.27.582387
N/A
0DataRank · unranked
1 citations

Raktim Mitra, Jiawei Huang, Xiaojiang S. Chen, Remo Rohs, Jared M. Sagendorf

Novel fold and wing structure of Forkhead transcription factor facilitate DNA binding

Nucleic Acids Research(2025)10.1093/nar/gkaf946
N/A
0DataRank · unranked
1 citations

Yibei Jiang, Yuying Sun, Fariborz Nasertorabi, Jesse A. Weller, Raktim Mitra +5 more

RNA sequence design and protein–DNA specificity prediction with NA-MPNN

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.03.679414
N/A
0DataRank · unranked
11 citations

Andrew Favor, Ryan McHugh, Raktim Mitra, Robert Pecoraro, Justas Dauparas +3 more

DeepPBS: Geometric deep learning for interpretable prediction of protein–DNA binding specificity

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.15.571942
N/A
0DataRank · unranked
3 citations

Jinsen Li, Jared M. Sagendorf, Yibei Jiang, Tsu-Pei Chiu, Remo Rohs +1 more