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Structure-based prediction of protein-nucleic acid binding using graph neural networks

Biophysical Reviews(2024)10.1007/s12551-024-01201-wSource: DataRank Database

Structure-based prediction of protein-nucleic acid binding using graph neural networks is a research paper published in Biophysical Reviews (2024). On theSindex it has a DataRank of 0.470. It has been cited 22 times.

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0.470DataRank · unranked

Scored on demand from live citation data

22 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (6 grants)Impact (FWCI 3.49)OA: hybridTopics (29)IDs (PubMed, PMC, OpenAlex)Annotations (2)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (0/2)

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 100%Citation Network 0%

Base Score Contribution

0.470

From this paper's citation signal

Citation Network Contribution

Citation network not refreshed for this result

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Authors (5)

Raktim Mitra ORCID,Jiawei Huang ORCID,Xiaojiang S. Chen ORCID,Remo Rohs ORCID,Jared M. Sagendorf ORCID

Live enrichment

PubMed:39345796 PMC:PMC11427629 OpenAlex:https://openalex.org/W4400039553

National Institute of Allergy and Infectious Diseases

Grant: R01AI150524

National Institute of General Medical Sciences

Grant: R35GM130376

Human Frontier Science Program

Grant: RGP0021/2018

National Institutes of Health

Grant: 5R01AI150524-12

Structural Basis of APOBEC Functions and HIV Restriction

National Institutes of Health

Grant: 5R35GM130376-03

Quantitative Modeling of Transcription Factor-DNA Binding

University of Southern California

FWCI

3.49

Citation Percentile

0.9%

Citation Trend

2024

2025

2026

hybridLicense: cc-by

journalhttps://doi.org/10.1007/s12551-024-01201-w

publisherhttps://doi.org/10.1007/s12551-024-01201-w

publisherhttps://link.springer.com/content/pdf/10.1007/s12551-024-01201-w.pdf

publisherhttps://link.springer.com/article/10.1007/s12551-024-01201-w/fulltext.html

repositoryhttps://pubmed.ncbi.nlm.nih.gov/39345796

Fields of Study

Machine Learning in BioinformaticsProtein Structure and DynamicsComputational Drug Discovery Methods0301 basic medicine03 medical and health sciences0206 medical engineering02 engineering and technology

Keywords

Nucleic acidComputational biologyRNA-binding proteinENCODEBinding siteRNAArtificial neural networkDNABiological systemChemistryArtificial intelligenceComputer scienceBiophysicsBiologyBiochemistryGeneStructural BioinformaticsProtein-dna BindingDeep LearningProtein-rna BindingStructure-function PredictionReview

Sustainable Development Goals

SDG 0: Reduced inequalities

Structure-based prediction of protein-nucleic acid binding using graph neural networks

FAIR Checklist

DataRank Breakdown

Authors (5)

Funding (6 grants)

Impact

Open Access

Topics

Annotations (Europe PMC)