🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Eran Agmon

University of Connecticut

ORCID: 0000-0003-1279-2474

Also affiliated with UConn Health

Biochemistry, Genetics and Molecular BiologyPhysics and Astronomy

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
4.0Author DataRank

Indexed papers

3in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation

Science(2020)10.1126/science.aav3751
Top 6%
4.0DataRank
Top 6%166 citations

Travis A. Ahn-Horst, Heejo Choi, Nicholas A. Ruggero, Javier Carrera, J. C. Mason +16 more

Papers

Driven by 15 papers — median percentile 0. Top paper: “Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation”.

Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation

Science(2020)10.1126/science.aav3751
Top 6%
4.0DataRank
Top 6%166 citations

Travis A. Ahn-Horst, Heejo Choi, Nicholas A. Ruggero, Javier Carrera, J. C. Mason +16 more

T cell-mediated curation and restructuring of tumor tissue coordinates an effective immune response

Cell Reports(2023)10.1016/j.celrep.2023.113494
N/A
0.785DataRank · unranked
32 citations

Maximillian Haist, Nina B. Horowitz, Chiara Caraccio, Yuqi Tan, Andrew J. Rech +11 more

BioSimulators: a central registry of simulation engines and services for recommending specific tools

Nucleic Acids Research(2022)10.1093/nar/gkac331
N/A
0.489DataRank · unranked
25 citations

Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon +71 more

Oscillatory hypoxia induced gene expression predicts low survival in human breast cancer patients

Molecular Carcinogenesis(2024)10.1002/mc.23810
N/A
0.397DataRank · unranked
8 citations

Yamin Liu, Wenqiang Du, Junaid Afzal, Xihua Qiu, Amina Atiq +4 more

Vivarium: an interface and engine for integrative multiscale modeling in computational biology

Bioinformatics(2022)10.1093/bioinformatics/btac049
N/A
0DataRank · unranked
37 citations

Ryan Spangler, Christopher J. Skalnik, William Poole, Shayn M. Peirce, Jerry H. Morrison +2 more

Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011232
N/A
0DataRank · unranked
13 citations

Sean Cheah, Mica Y. Yang, Mattheus Wolff, Ryan Spangler, Lee Talman +5 more

Integrating Multiplexed Imaging and Multiscale Modeling Identifies Tumor Phenotype Transformation as a Critical Component of Therapeutic T Cell Efficacy

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.06.570168
N/A
0DataRank · unranked
1 citations

Eran Agmon, Nina B. Horowitz, Matthew Lamore, John B. Sunwoo, Markus W. Covert +2 more

Integrating multiplexed imaging and multiscale modeling identifies tumor phenotype conversion as a critical component of therapeutic T cell efficacy

Cell Systems(2024)10.1016/j.cels.2024.03.004
N/A
0DataRank · unranked
25 citations

Eran Agmon, Nina B. Horowitz, Tze-Kai Tan, Matthew Lamore, John B. Sunwoo +3 more

Oscillatory Hypoxia Induced Unfolded Protein Folding Response Gene Expression Predicts Low Survival in Human Breast Cancer Patients

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.25.577274
N/A
0DataRank · unranked
1 citations

Yamin Liu, Wenqiang Du, Junaid Afzal, Xihua Qiu, Amina Atiq +4 more

Foundations of a Compositional Systems Biology

arXiv (Cornell University)(2024)10.48550/arxiv.2408.00942
N/A
0DataRank · unranked
0 citations

Eran Agmon

Verification and reproducible curation of the BioModels repository

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.16.633337
Top 100%
0DataRank
Top 100%0 citations

Rahuman S. Malik‐Sheriff, Tung V. N. Nguyen, Henning Hermjakob, Jonathan R Karr, Bilal Shaikh +12 more

Verification and reproducible curation of the BioModels repository

PLoS Computational Biology(2025)10.1371/journal.pcbi.1013239
Top 100%
0DataRank
Top 100%0 citations

Rahuman S. Malik‐Sheriff, Tung V. N. Nguyen, Henning Hermjakob, Jonathan R Karr, Bilal Shaikh +12 more

A Multi-Scale Approach to Modeling E. coli Chemotaxis

Entropy(2020)10.3390/e22101101
N/A
0DataRank · unranked
9 citations

Ryan Spangler, Eran Agmon

Vivarium: an Interface and Engine for Integrative Multiscale Modeling in Computational Biology

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.27.441657
N/A
0DataRank · unranked
9 citations

Ryan Spangler, Christopher J. Skalnik, William Poole, Shayn M. Peirce, Jerry H. Morrison +2 more

Whole-Colony Modeling of Escherichia coli

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.27.441666
N/A
0DataRank · unranked
5 citations

Eran Agmon, Ryan Spangler, Lee Talman, Jerry H. Morrison, Shayn M. Peirce +2 more