Mengjie Chen

Also affiliated with South China Normal University, Zhengzhou University, University of Illinois Chicago, University of Chicago, Taizhou First People's Hospital, Beijing Hospital of Traditional Chinese Medicine, Beijing Tsinghua Chang Gung Hospital, Shanghai Children's Hospital, Hunan Agricultural University, Tsinghua University

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile

0.898Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A cell atlas of the human fallopian tube throughout the menstrual cycle and menopause

Nature Communications(2025)10.1038/s41467-024-55440-2

Top 34%

0.580DataRank

Top 34%22 citations

Yan Li, Lisha Zhu, Heather Eckart, Preety Bajwa, Rahul Krishnan +7 more

Papers

Driven by 35 papers — median percentile 47. Top paper: “RBFOX2 recognizes N6-methyladenosine to suppress transcription and block myeloid leukaemia differentiation”.

RBFOX2 recognizes N6-methyladenosine to suppress transcription and block myeloid leukaemia differentiation

Nature Cell Biology(2023)10.1038/s41556-023-01213-w

N/A

0.675DataRank · unranked

89 citations

Yu Xiao, Chao Shen, Kitty Wang, Tong Wu, Chang Liu +14 more

Whole-genome analysis of Nigerian patients with breast cancer reveals ethnic-driven somatic evolution and distinct genomic subtypes

Nature Communications(2021)10.1038/s41467-021-27079-w

N/A

0.633DataRank · unranked

67 citations

Yonglan Zheng, Toshio F. Yoshimatsu, Ayodele Sanni, Mustapha Ajani, J.-P. de Reynier +23 more

A cell atlas of the human fallopian tube throughout the menstrual cycle and menopause

Nature Communications(2025)10.1038/s41467-024-55440-2

Top 34%

0.580DataRank

Top 34%22 citations

Yan Li, Lisha Zhu, Heather Eckart, Preety Bajwa, Rahul Krishnan +7 more

A new Bayesian factor analysis method improves detection of genes and biological processes affected by perturbations in single-cell CRISPR screening

Nature Methods(2023)10.1038/s41592-023-02017-4

N/A

0.553DataRank · unranked

39 citations

Kaixuan Luo, Lifan Liang, Mengjie Chen, Xin He, Yifan Zhou

Spatial proteo-transcriptomic profiling reveals the molecular landscape of borderline ovarian tumors and their invasive progression

medRxiv(2023)10.1101/2023.11.13.23298409

N/A

0.463DataRank · unranked

7 citations

Rahul Krishnan, Aasa Shimizu, Andreas Metousis, Hilary A. Kenny, Rachelle Mendoza +18 more

A molecular atlas of the human postmenopausal fallopian tube and ovary from single-cell RNA and ATAC sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.04.502826

Top 53%

0.318DataRank

Top 53%6 citations

Yan Li, Melanie Weigert, Lisha Zhu, Heather Eckart, Melissa Javellana +10 more

scPrediXcan integrates deep learning methods and single-cell data into a cell-type-specific transcriptome-wide association study framework

Cell Genomics(2025)10.1016/j.xgen.2025.100875

N/A

0.312DataRank · unranked

7 citations

Temidayo Adeluwa, Lisha Zhu, Sofia Salazar-Magaña, Sarah Sumner, Hyunki Kim +9 more

KAS-Analyzer: a novel computational framework for exploring KAS-seq data

Bioinformatics Advances(2023)10.1093/bioadv/vbad121

N/A

0.292DataRank · unranked

6 citations

Tong Wu, Gayoung Park, Yu‐Ying He, Mengjie Chen, Chuan He +1 more

Alignment of single-cell RNA-seq samples without over-correction using kernel density matching

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.05.895136

N/A

0.208DataRank · unranked

3 citations

Qi Zhang, Zepeng Mu, Lili Wang, Zhaohui Zheng, Jinlin Miao +3 more

Whole-genome analysis of Nigerian patients with breast cancer reveals ethnic-driven somatic evolution and distinct genomic subtypes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.28.359240

N/A

0.165DataRank · unranked

2 citations

Yonglan Zheng, Jason J. Pitt, Stefan C. Dentro, Toshio F. Yoshimatsu, Ayodele Sanni +21 more

Arsenic regulates ALKBH1 abundance and substrate specificity to promote translation and tumorigenicity

Cell Reports(2025)10.1016/j.celrep.2025.116311

N/A

0.165DataRank · unranked

2 citations

Yan‐Hong Cui, Zizhao Yang, Michelle Verghese, Seungwon Yang, Ming Sun +8 more

Introducing iCatalog as a clinical decision support tool for collaborative pediatric precision oncology studies

Communications Medicine(2026)10.1038/s43856-025-01351-2

N/A

0.104DataRank · unranked

1 citations

Lorena Lazo de la Vega, Hannah Comeau, Ergina Agastra, Luke Maese, AeRang Kim +14 more

scPrediXcan integrates advances in deep learning and single-cell data into a powerful cell-type–specific transcriptome-wide association study framework

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.11.623049

N/A

0.104DataRank · unranked

1 citations

Temidayo Adeluwa, Lisha Zhu, Sofia Salazar, Sarah Sumner, Hyunki Kim +9 more

scRICA: An R package for multiple-sample single-cell RNA-seq data integrative comparative analysis

F1000Research(2025)10.12688/f1000research.153698.1

N/A

0.104DataRank · unranked

1 citations

Jason W. Shapiro, Qiaoshan Lin, Qing Gong, Michiko Ryu, Mengjie Chen +1 more

Exon architecture controls mRNA m 6 A suppression and gene expression

Science(2023)10.1126/science.abj9090

N/A

0DataRank · unranked

248 citations

Jiangbo Wei, Xiaoyang Dou, Bryan T. Harada, Zijie Zhang, Ryan A. Flynn +9 more

Multiomic analysis reveals cellular, transcriptomic and epigenetic changes in intestinal pouches of ulcerative colitis patients

medRxiv(2023)10.1101/2023.11.11.23298309

N/A

0DataRank · unranked

5 citations

Ran Zhou, Bingqing Xie, Cambrian Y. Liu, Martin Kalski, Candace M. Cham +14 more

Computational prediction of protein interactions on single cells by proximity sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.27.550388

N/A

0DataRank · unranked

1 citations

Hoang Van Phan, Luke Vistain, Mengjie Chen, Aly A. Khan, Savaş Tay +1 more

A Cellular atlas of the human fallopian tube reveals the metamorphosis of secretory epithelial cells during the menstrual cycle and menopause

medRxiv(2023)10.1101/2023.11.22.23298470

Top 100%

0DataRank

Top 100%0 citations

Yi Li, Lixia Zhu, Heather Eckart, Prabhjot Singh Bajwa, Ranga Krishnan +7 more

LABS: linear amplification-based bisulfite sequencing for ultrasensitive cancer detection from cell-free DNA

Genome biology(2024)10.1186/s13059-024-03262-2

N/A

0DataRank · unranked

10 citations

Ji Nie, Houxiang Zhu, Krissana Kowitwanich, Alana V. Beadell, Diana C. West-Szymanski +24 more

Computational prediction of protein interactions in single cells by proximity sequencing

PLoS Computational Biology(2024)10.1371/journal.pcbi.1011915

N/A

0DataRank · unranked

3 citations

Hoang Van Phan, Luke Vistain, Mengjie Chen, Aly A. Khan, Savaş Tay +1 more

Capturing cell-type-specific activities of cis-regulatory elements from peak-based single-cell ATAC-seq

Cell Genomics(2025)10.1016/j.xgen.2025.100806

N/A

0DataRank · unranked

6 citations

Mengjie Chen

KAS-pipe2: a flexible toolkit for exploring KAS-seq and spKAS-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.10.503490

N/A

0DataRank · unranked

1 citations

Tong Wu, Gayoung Park, Yu-Ying He, Chuan He, Mengjie Chen +1 more

Integrative differential expression and gene set enrichment analysis using summary statistics for scRNA-seq studies

Nature Communications(2020)10.1038/s41467-020-15298-6

N/A

0DataRank · unranked

96 citations

Shiquan Sun, Xuequn Shang, Evan T. Keller, Mengjie Chen, Xiang Zhou +1 more

Demystifying “drop-outs” in single cell UMI data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.31.018911

N/A

0DataRank · unranked

7 citations

Xiang Zhou, Mengjie Chen, Tae Il Kim

Quantification of proteins, protein complexes and mRNA in single cells by proximity-sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.15.098780

N/A

0DataRank · unranked

4 citations

Hoang Van Phan, Christian Jordi, Mengjie Chen, Sai T. Reddy, Savaş Tay +1 more

Association Studies with Imputed Variants Using Expectation-Maximization Likelihood-Ratio Tests

UNC Libraries(2020)10.17615/takt-vv35

N/A

0DataRank · unranked

0 citations

Karen L. Mohlke, Wei Sun, Mengjie Chen, Leslie A. Lange, Yun Li +2 more

SynthEx: a synthetic-normal-based DNA sequencing tool for copy number alteration detection and tumor heterogeneity profiling

UNC Libraries(2020)10.17615/wep6-xc29

N/A

0DataRank · unranked

0 citations

Lisle E. Mose, Charles M. Perou, Marni B. Siegel, Joel S. Parker, Mengjie Chen +2 more

Comprehensive analysis of The Cancer Genome Atlas reveals a unique gene and non-coding RNA signature of fibrolamellar carcinoma

UNC Libraries(2020)10.17615/hnzk-nq19

N/A

0DataRank · unranked

0 citations

Kevin G. Greene, Tsunekazu Oikawa, Eliane Wauthier, Michael Torbenson, Mengjie Chen +7 more

Global copy number profiling of cancer genomes

UNC Libraries(2020)10.17615/djsd-nh36

N/A

0DataRank · unranked

0 citations

Mengjie Chen, Xuefeng Wang, Xiaoqing Yu, Nancy R. Zhang, R. Scott Powers +3 more

Extensive pleiotropism and allelic heterogeneity mediate metabolic effects of IRX3 and IRX5

Science(2021)10.1126/science.abf1008

N/A

0DataRank · unranked

118 citations

Amelia C. Joslin, Qi Zhang, Iain Williamson, Grace Hansen, Kathryn Farris +13 more

Effective and scalable single-cell data alignment with non-linear canonical correlation analysis

Nucleic Acids Research(2021)10.1093/nar/gkab1147

N/A

0DataRank · unranked

29 citations

Mengjie Chen, Xiang Zhou, Jialu Hu

Alignment of single-cell RNA-seq samples without overcorrection using kernel density matching

Genome Research(2021)10.1101/gr.261115.120

N/A

0DataRank · unranked

16 citations

Qi Zhang, Zepeng Mu, Lili Wang, Zhaohui Zheng, Jinlin Miao +3 more

N6-adenomethylation of GsdmC is essential for Lgr5+ stem cell survival to maintain normal colonic epithelial morphogenesis

Developmental Cell(2022)10.1016/j.devcel.2022.07.006

N/A

0DataRank · unranked

40 citations

Rajesh Sarkar, Yan Li, Lei He, Wenjun Kang, Wang Liao +11 more

A novel Bayesian factor analysis method improves detection of genes and biological processes affected by perturbations in single-cell CRISPR screening

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.13.480282

N/A

0DataRank · unranked

1 citations

Kaixuan Luo, Mengjie Chen, Xin He, Yifan Zhou

Demystifying “drop-outs” in single-cell UMI data

Genome biology(2020)10.1186/s13059-020-02096-y

N/A

0DataRank · unranked

157 citations

Xiang Zhou, Mengjie Chen, Tae Hyun Kim

Mengjie Chen

Indexed papers

Top data-sharing exemplar

Papers