Peter J. Tonge

Also affiliated with University of Rochester, Stony Brook University

NeuroscienceMedicineBiochemistry, Genetics and Molecular BiologyMaterials ScienceAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 30 papers. Top paper: “A Machine Learning-Based Method To Improve Docking Scoring Functions and Its Application to Drug Repurposing”.

A Machine Learning-Based Method To Improve Docking Scoring Functions and Its Application to Drug Repurposing

Journal of Chemical Information and Modeling(2011)10.1021/ci100369f

N/A

0.816DataRank · unranked

229 citations

Nina Liu, Peter J. Tonge, Richard M. Jackson, Lei Xie, Philip E. Bourne +1 more

Ready-to-use iPSC-derived microglia progenitors for the treatment of CNS disease in mouse models of neuropathic mucopolysaccharidoses

Nature Communications(2024)10.1038/s41467-024-52400-8

N/A

0.673DataRank · unranked

13 citations

Diego F. Buenaventura, Bruce Sun, Ashley E. Lepack, Liz Baker, Elizabeth Simpson +22 more

Correction to “A Machine Learning-Based Method To Improve Docking Scoring Functions and Its Application to Drug Repurposing”

Journal of Chemical Information and Modeling(2011)10.1021/ci2001346

N/A

0.504DataRank · unranked

10 citations

Nina Liu, Peter J. Tonge, Richard M. Jackson, Lei Xie, Philip E. Bourne +1 more

An Assessment of Kinase Selectivity, Enzyme Inhibition Kinetics and in Vitro Activity for Several Bruton Tyrosine Kinase (BTK) Inhibitors

ACS Pharmacology & Translational Science(2025)10.1021/acsptsci.5c00412

N/A

0.165DataRank · unranked

2 citations

Xiaohu Zhang, Patricia Alfonso, Patrick J. Morris, Carleen Klumpp‐Thomas, Christopher Melani +12 more

Excited State Resonance Raman of Flavin Mononucleotide: Comparison of Theory and Experiment

The Journal of Physical Chemistry A(2021)10.1021/acs.jpca.1c04063

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0DataRank · unranked

22 citations

Palas Roy, Christopher R. Hall, James N. Iuliano, Garth A. Jones, András Lukács +3 more

Identification of the vibrational marker of tyrosine cation radical using ultrafast transient infrared spectroscopy of flavoprotein systems

Photochemical & Photobiological Sciences(2021)10.1007/s43630-021-00024-y

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0DataRank · unranked

17 citations

Lipsa Nag, Zsuzsanna Fekete, James N. Iuliano, Jinnette Tolentino Collado, Ian P. Clark +9 more

Structure–Kinetic Relationship Studies for the Development of Long Residence Time LpxC Inhibitors

Journal of Medicinal Chemistry(2022)10.1021/acs.jmedchem.2c00974

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0DataRank · unranked

21 citations

Yong Li, Suyuan Tao, Fereidoon Daryaee, Jonathan Merino, Chendi Gu +6 more

Heterobivalent Inhibitors of Acetyl-CoA Carboxylase: Drug Target Residence Time and Time-Dependent Antibacterial Activity

Journal of Medicinal Chemistry(2022)10.1021/acs.jmedchem.2c01380

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0DataRank · unranked

8 citations

YongLe He, Rajeswari Basu, Nan Wang, Shabnam Davoodi, Lauren A. Spagnuolo +6 more

Discovery of Novel Bruton’s Tyrosine Kinase PROTACs with Enhanced Selectivity and Cellular Efficacy

Journal of Medicinal Chemistry(2023)10.1021/acs.jmedchem.3c00176

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0DataRank · unranked

12 citations

William G. Lannigan, Shabnam Davoodi, Fereidoon Daryaee, Ana Corrionero, Patricia Alfonso +5 more

Evaluating the Impact of the Tyr158 pKa on the Mechanism and Inhibition of InhA, the Enoyl-ACP Reductase from Mycobacterium tuberculosis

Biochemistry(2023)10.1021/acs.biochem.2c00606

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0DataRank · unranked

10 citations

Fereidoon Daryaee, James N. Iuliano, Jinnette Tolentino Collado, YongLe He, Alyssa C. Pollard +4 more

Single Amino Acid Mutation Decouples Photochemistry of the BLUF Domain from the Enzymatic Function of OaPAC and Drives the Enzyme to a Switched-on State

Journal of Molecular Biology(2023)10.1016/j.jmb.2023.168312

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0DataRank · unranked

6 citations

Emőke Bódis, Jonatan Pasitka, Mihály Szűcs, Zsuzsanna Fekete, Nikolett Kis‐Bicskei +8 more

Photocycle alteration and increased enzymatic activity in genetically modified photoactivated adenylate cyclase OaPAC

Journal of Biological Chemistry(2023)10.1016/j.jbc.2023.105056

N/A

0DataRank · unranked

5 citations

Katalin Pirisi, Bo Zhuang, Zsuzsanna Fekete, Nikolett Kis‐Bicskei, Ildikó Pécsi +10 more

Neutral ceramidase-active site inhibitor chemotypes and binding modes

Bioorganic Chemistry(2023)10.1016/j.bioorg.2023.106747

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0DataRank · unranked

3 citations

John D. Bickel, Ronald J. Rahaim, Yuka Otsuka, Yong‐Mi Choi, Ruijuan Xu +14 more

Enhancing Proton-Coupled Electron Transfer in Blue Light Using FAD Photoreceptor AppABLUF

Journal of the American Chemical Society(2024)10.1021/jacs.4c11817

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0DataRank · unranked

9 citations

Agnieszka A. Gil, Sergey P. Laptenok, Anam Fatima, Jinnette Tolentino Collado, James N. Iuliano +11 more

Biological Evaluation of d-[18F]Fluoroalanine and d-[18F]Fluoroalanine-d3 as Positron Emission Tomography Imaging Tracers for Bacterial Infection

Journal of Medicinal Chemistry(2024)10.1021/acs.jmedchem.4c00783

N/A

0DataRank · unranked

8 citations

Jinnette Tolentino Collado, Jocelyn A. Marden, Alyssa C. Pollard, Shuwen Guo, Peter J. Tonge +2 more

Synthesis and Biological Evaluation of Fluorine-18 and Deuterium Labeled l-Fluoroalanines as Positron Emission Tomography Imaging Agents for Cancer Detection

Journal of Medicinal Chemistry(2024)10.1021/acs.jmedchem.4c00774

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0DataRank · unranked

6 citations

Alexa L. Gilberti, Jocelyn A. Marden, Hari K. Akula, Alyssa C. Pollard, Shuwen Guo +4 more

Elucidating the Signal Transduction Mechanism of the Blue-Light-Regulated Photoreceptor YtvA: From Photoactivation to Downstream Regulation

ACS Chemical Biology(2024)10.1021/acschembio.3c00722

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0DataRank · unranked

6 citations

Jinnette Tolentino Collado, James N. Iuliano, Helena A. Woroniecka, Christopher R. Hall, Agnieszka A. Gil +10 more

Preclinical Positron Emission Tomography (PET) of Prosthetic Joint Infection Using a Nitro-Prodrug of 2-[18F]F-p-Aminobenzoic Acid ([18F]F-PABA)

ACS Infectious Diseases(2024)10.1021/acsinfecdis.4c00075

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0DataRank · unranked

3 citations

Kaixuan Li, Yong Li, Shin Hye Ahn, Mingqian Wang, Melike Akoglu +9 more

Light-Driven Enzyme Catalysis: Ultrafast Mechanisms and Biochemical Implications

Biochemistry(2025)10.1021/acs.biochem.5c00039

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0DataRank · unranked

11 citations

Marco Barone, Stephen R. Meech, András Lukács, Peter J. Tonge, YongLe He

Time-Dependent Inhibition of Leucyl-tRNA-Synthetase (LeuRS): Insight into Target Vulnerability

ACS Infectious Diseases(2025)10.1021/acsinfecdis.4c01017

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0DataRank · unranked

7 citations

YongLe He, Siobhan A. Cohen, Amanda R. Strohm, John D. Haley, Stephen G. Walker +3 more

A BRET biosensor for measuring uncompetitive engagement of PRMT5 complexes in cells

Nature Communications(2025)10.1038/s41467-025-65558-6

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0DataRank · unranked

4 citations

Ani Michaud, Jakub Stefaniak, Usha Singh, Brynwood B. Mikulsky, James D. Vasta +14 more

Ultrafast photophysics of a positive reversibly switchable fluorescent protein

Chemical Science(2025)10.1039/d5sc04491j

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0DataRank · unranked

5 citations

YongLe He, James N. Iuliano, Gregory M. Greetham, Partha Malakar, Christopher R. Hall +7 more

Dynamics and Mechanism of Off‐ to On‐Switching in Dreiklang a Decoupled Reversibly Switchable Fluorescent Protein

Angewandte Chemie International Edition(2025)10.1002/anie.202518264

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0DataRank · unranked

1 citations

YongLe He, Danielle Rosenberger, Gregory M. Greetham, Partha Malakar, András Lukács +3 more

A Live Cell BRET Probe to Quantify PRMT5-MTA Uncompetitive Target Engagement

ChemRxiv(2025)10.26434/chemrxiv-2025-318k4

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0DataRank · unranked

0 citations

Ani Michaud, Jakub Stefaniak, Usha Singh, James D. Vasta, Michael Beck +11 more

Selectivity of the time-dependent M. tuberculosis LeuRS inhibitor ganfeborole is driven by target vulnerability

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.31.667927

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0DataRank · unranked

0 citations

YongLe He, Siobhan A. Cohen, Amanda R. Strohm, Gauri Shetye, Scott G. Franzblau +4 more

Dynamics and Mechanism of Off‐ to On‐Switching in Dreiklang a Decoupled Reversibly Switchable Fluorescent Protein

Angewandte Chemie(2025)10.1002/ange.202518264

N/A

0DataRank · unranked

0 citations

YongLe He, Danielle Rosenberger, Gregory M. Greetham, Partha Malakar, András Lukács +3 more

Only Time Will Tell: Modeling the Kinetics of Covalent Inhibitors

PubMed Central(2025)10.22541/au.176537376.66820079/v1

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0DataRank · unranked

0 citations

Peter J. Tonge, Madeeha Ali

Excited State Vibrations of Isotopically Labeled FMN Free and Bound to a Light–Oxygen–Voltage (LOV) Protein

The Journal of Physical Chemistry B(2020)10.1021/acs.jpcb.0c04943

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0DataRank · unranked

17 citations

Christopher R. Hall, Dale Green, Garth A. Jones, András Lukács, Boris Illarionov +6 more

Exploring the chemical space of 1,2,3-triazolyl triclosan analogs for discovery of new antileishmanial chemotherapeutic agents

RSC Medicinal Chemistry(2020)10.1039/d0md00291g

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0DataRank · unranked

8 citations

Alejandro Recio-Balsells, Diego G. Ghiano, Ana Bortolotti, Juan M. Belardinelli, Nina Liu +7 more

Unraveling the Mechanism of a LOV Domain Optogenetic Sensor: A Glutamine Lever Induces Unfolding of the Jα Helix

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.29.925040

N/A

0DataRank · unranked

2 citations

Jinnette Tolentino Collado, Agnieszka A. Gil, Pavithran T. Ravindran, András Lukács, SeungYoun Shin +16 more