David K. Gifford

Biochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 18 papers. Top paper: “Machine learning based CRISPR gRNA design for therapeutic exon skipping”.

Machine learning based CRISPR gRNA design for therapeutic exon skipping

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008605

N/A

0.385DataRank · unranked

12 citations

Max W. Shen, Zakir Tahiry, Sophia Zhang, Daniel Worstell, Christopher A. Cassa +3 more

Identification of determinants of differential chromatin accessibility through a massively parallel genome-integrated reporter assay

Genome Research(2020)10.1101/gr.263228.120

N/A

0DataRank · unranked

24 citations

Konstantin Krismer, Budhaditya Banerjee, David K. Gifford, Richard I. Sherwood, Jennifer Hammelman

Robust computational design and evaluation of peptide vaccines for cellular immunity with application to SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.16.088989

N/A

0DataRank · unranked

7 citations

Brandon Carter, Trenton Bricken, Siddhartha Jain, Mathias Viard, Mary Carrington +2 more

Generative modeling of single-cell population time series for inferring cell differentiation landscapes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.26.269332

N/A

0DataRank · unranked

5 citations

Sachit D. Saksena, David K. Gifford, Grace Hui Ting Yeo

Machine learning optimization of peptides for presentation by class II MHCs

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.18.256081

N/A

0DataRank · unranked

0 citations

Brooke D. Huisman, Haoyang Zeng, Brandon Carter, Siddhartha Jain, Michael E. Birnbaum +2 more

Generative modeling of single-cell time series with PRESCIENT enables prediction of cell trajectories with interventions

Nature Communications(2021)10.1038/s41467-021-23518-w

N/A

0DataRank · unranked

102 citations

Sachit D. Saksena, David K. Gifford, Grace Hui Ting Yeo

An expansion of the non-coding genome and its regulatory potential underlies vertebrate neuronal diversity

Neuron(2021)10.1016/j.neuron.2021.10.014

N/A

0DataRank · unranked

42 citations

Yuchun Guo, Ping Wang, Tulsi Patel, Sumin Jang, Jennifer Hammelman +7 more

Discovering differential genome sequence activity with interpretable and efficient deep learning

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009282

N/A

0DataRank · unranked

14 citations

David K. Gifford, Jennifer Hammelman

Machine learning optimization of peptides for presentation by class II MHCs

Bioinformatics(2021)10.1093/bioinformatics/btab131

N/A

0DataRank · unranked

12 citations

Brooke D. Huisman, Haoyang Zeng, Brandon Carter, Siddhartha Jain, Michael E. Birnbaum +2 more

Detection of gene cis-regulatory element perturbations in single-cell transcriptomes

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008789

N/A

0DataRank · unranked

1 citations

Oscar Juez, Qing Chen, Budhaditya Banerjee, Lendy Chu, Max W. Shen +5 more

spatzie: An R package for identifying significant transcription factor motif co-enrichment from enhancer-promoter interactions

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.25.445606

N/A

0DataRank · unranked

1 citations

Konstantin Krismer, David K. Gifford, Jennifer Hammelman

Ranking reprogramming factors for cell differentiation

Nature Methods(2022)10.1038/s41592-022-01522-2

N/A

0DataRank · unranked

36 citations

Tulsi Patel, Michael Closser, Hynek Wichterle, David K. Gifford, Jennifer Hammelman

spatzie: an R package for identifying significant transcription factor motif co-enrichment from enhancer–promoter interactions

Nucleic Acids Research(2022)10.1093/nar/gkac036

N/A

0DataRank · unranked

2 citations

Konstantin Krismer, David K. Gifford, Jennifer Hammelman

Ultra-high-diversity factorizable libraries for efficient therapeutic discovery

Genome Research(2022)10.1101/gr.276593.122

N/A

0DataRank · unranked

1 citations

Sachit D. Saksena, Geraldine Horny, Christine Banholzer, Stefan Ewert, David K. Gifford +1 more

Ultra high diversity factorizable libraries for efficient therapeutic discovery

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.17.476670

N/A

0DataRank · unranked

0 citations

Sachit D. Saksena, Geraldine Horny, Christine Banholzer, Stefan Ewert, David K. Gifford +1 more

seqgra: principled selection of neural network architectures for genomics prediction tasks

Bioinformatics(2022)10.1093/bioinformatics/btac101

N/A

0DataRank · unranked

0 citations

Jennifer Hammelman, David K. Gifford, Konstantin Krismer

IDR2D identifies reproducible genomic interactions

Nucleic Acids Research(2020)10.1093/nar/gkaa030

N/A

0DataRank · unranked

17 citations

Yuchun Guo, David K. Gifford, Konstantin Krismer

Major β cell-specific functions of NKX2.2 are mediated via the NK2-specific domain

Genes & Development(2023)10.1101/gad.350569.123

N/A

0DataRank · unranked

17 citations

Joshua A. Levine, Angela J. Churchill, Bryce Hopwood, Cailin Deiter, Michelle A. Guney +9 more