🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Sam Giannakoulias

Advanced Center for Orthopedics

ORCID: 0000-0003-1830-6369

Also affiliated with Sentar (United States), Science Applications International Corporation (United States)

Biochemistry, Genetics and Molecular BiologyMedicineComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 10 papers. Top paper: “Identification of a nanomolar affinity α-synuclein fibril imaging probe by ultra-high throughput in silico screening”.

Identification of a nanomolar affinity α-synuclein fibril imaging probe by ultra-high throughput in silico screening

Chemical Science(2020)10.1039/d0sc02159h

N/A

0.612DataRank · unranked

58 citations

Zsofia Lengyel‐Zhand, Bieneke Janssen, Marshall G. Lougee, Sam Giannakoulias, Chia‐Ju Hsieh +8 more

Effects of Mutations and Post-Translational Modifications on α-Synuclein In Vitro Aggregation

Journal of Molecular Biology(2022)10.1016/j.jmb.2022.167859

N/A

0.590DataRank · unranked

50 citations

Yanxin J. Wang, Marie Shimogawa, Ryann M. Perez, Sam Giannakoulias, E. James Petersson +1 more

Structural impact of thioamide incorporation into a β-hairpin

RSC Chemical Biology(2022)10.1039/d1cb00229e

N/A

0.416DataRank · unranked

15 citations

Martijn J. Patist, Sam Giannakoulias, Cheng‐Hsin Huang, Hitesh Verma, Bhavesh Khatri +4 more

FRETing about the details: Case studies in the use of a genetically encoded fluorescent amino acid for distance‐dependent energy transfer

Protein Science(2023)10.1002/pro.4633

N/A

0DataRank · unranked

12 citations

Chloe M. Jones, Kyle D. Shaffer, Yarra Venkatesh, Sam Giannakoulias, Ryann M. Perez +9 more

Proteins Need Extra Attention: Improving the Predictive Power of Protein Language Models on Mutational Datasets with Hint Tokens

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.05.570055

N/A

0DataRank · unranked

1 citations

Ryann M. Perez, Sam Giannakoulias, E. James Petersson, Xinning Li

The development of a PET radiotracer for imaging alpha synuclein aggregates in Parkinson's disease

RSC Medicinal Chemistry(2025)10.1039/d5md00057b

N/A

0DataRank · unranked

9 citations

Chia‐Ju Hsieh, Dinahlee Saturnino Guarino, Thomas J. A. Graham, Zsofia Lengyel‐Zhand, Alexander Schmitz +17 more

Accurate Prediction of Protein Tertiary and Quaternary Stability Using Fine-Tuned Protein Language Models and Free Energy Perturbation

International Journal of Molecular Sciences(2025)10.3390/ijms26157125

N/A

0DataRank · unranked

2 citations

Ryann M. Perez, John J. Ferrie, E. James Petersson, Sam Giannakoulias, X.D. Li

Proteins need extra attention: improving the predictive power of protein language models on mutational datasets with hint tokens

NAR Genomics and Bioinformatics(2025)10.1093/nargab/lqaf128

N/A

0DataRank · unranked

0 citations

Ryann M. Perez, Sam Giannakoulias, E. James Petersson, Xinning Li

Rational design of thioamide peptides as selective inhibitors of cysteine protease cathepsin L

Chemical Science(2021)10.1039/d1sc00785h

N/A

0DataRank · unranked

20 citations

Sam Giannakoulias, Taylor M. Barrett, Chunxiao Liu, E. James Petersson, Hoang Anh T. Phan

AggBERT: Best in Class Prediction of Hexapeptide Amyloidogenesis with a Semi-Supervised ProtBERT Model

Journal of Chemical Information and Modeling(2023)10.1021/acs.jcim.3c00817

N/A

0DataRank · unranked

15 citations

Xinning Li, Sam Giannakoulias, E. James Petersson, Ryann M. Perez