Michael J. MacCoss

ChemistryMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

13.2Author DataRank

Indexed papers

10in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 10 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The ProteomeXchange consortium at 10 years: 2023 update

Nucleic Acids Research(2022)10.1093/nar/gkac1040

Top 4%

5.2DataRank

Top 4%876 citations

Nuno Bandeira, Yasset Perez-Riverol, Vagisha Sharma, Jeremy Carver, Luis Mendoza +17 more

Papers

Driven by 97 papers — median percentile 68. Top paper: “The ProteomeXchange consortium at 10 years: 2023 update”.

The ProteomeXchange consortium at 10 years: 2023 update

Nucleic Acids Research(2022)10.1093/nar/gkac1040

Top 4%

5.2DataRank

Top 4%876 citations

Nuno Bandeira, Yasset Perez-Riverol, Vagisha Sharma, Jeremy Carver, Luis Mendoza +17 more

Proteogenomic data and resources for pan-cancer analysis

Cancer Cell(2023)10.1016/j.ccell.2023.06.009

Top 6%

3.4DataRank

Top 6%241 citations

Yongchao Dou, Felipe da Veiga Leprevost, Yifat Geffen, Anna Calinawan, François Aguet +93 more

Sampling the proteome by emerging single-molecule and mass spectrometry methods

Nature Methods(2023)10.1038/s41592-023-01802-5

N/A

1.9DataRank · unranked

85 citations

Javier A. Alfaro, Danielle A. Faivre, Christine C. Wu, Meni Wanunu, Nikolai Slavov +1 more

METLIN-CCS: an ion mobility spectrometry collision cross section database

Nature Methods(2023)10.1038/s41592-023-02078-5

Top 13%

1.6DataRank

Top 13%60 citations

Corey Hoang, Winnie Uritboonthai, Heino Heyman, Brian Pratt, Michael J. MacCoss +5 more

An expansive human regulatory lexicon encoded in transcription factor footprints

Nature(2012)10.1038/nature11212

N/A

1.0DataRank · unranked

802 citations

Jost Vielmetter, Andrew B. Stergachis, Alex P. Reynolds, Eric Haugen, Benjamin Vernot +36 more

Skyline for Small Molecules: A Unifying Software Package for Quantitative Metabolomics

Journal of Proteome Research(2020)10.1021/acs.jproteome.9b00640

N/A

0.957DataRank · unranked

587 citations

Brian Pratt, Neelanjan Bose, Laura G. Dubois, Lisa St. John‐Williams, Kevin M. Perrott +11 more

Wilms Tumor Suppressor WTX Negatively Regulates WNT/ß-Catenin Signaling

Science(2007)10.1126/science/1141515

N/A

0.903DataRank · unranked

411 citations

Nathan D. Camp, Jason D. Berndt, XianHua Yi, Seth J. Goldenberg, Charlotte Hubbert +9 more

NCI’s Proteomic Data Commons: A Cloud-Based Proteomics Repository Empowering Comprehensive Cancer Analysis through Cross-Referencing with Genomic and Imaging Data

Cancer Research Communications(2024)10.1158/2767-9764.crc-24-0243

Top 28%

0.732DataRank

Top 28%28 citations

Michael Holck, Deepak Singhal, Alexander Pilozzi, Nathan Edwards, Paul A. Rudnick +22 more

Profiling mouse brown and white adipocytes to identify metabolically relevant small ORFs and functional microproteins

Cell Metabolism(2023)10.1016/j.cmet.2022.12.004

N/A

0.657DataRank · unranked

79 citations

Sally Lyons‐Abbott, Angie L. Bookout, Eduardo Vieira de Souza, Cynthia J. Donaldson, Joan Vaughan +26 more

A peptide-centric quantitative proteomics dataset for the phenotypic assessment of Alzheimer’s disease

Scientific Data(2023)10.1038/s41597-023-02057-7

Top 31%

0.652DataRank

Top 31%25 citations

Jea Park, Deanna L. Plubell, Brian C. Searle, C. Dirk Keene, Eric B. Larson +11 more

Mag-Net: Rapid enrichment of membrane-bound particles enables high coverage quantitative analysis of the plasma proteome

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.10.544439

N/A

0.624DataRank · unranked

63 citations

Kristine A. Tsantilas, Jea Park, Deanna L. Plubell, Justin Sanders, Previn Naicker +14 more

Enrichment of extracellular vesicles using Mag-Net for the analysis of the plasma proteome

Nature Communications(2025)10.1038/s41467-025-60595-7

N/A

0.606DataRank · unranked

56 citations

Kristine A. Tsantilas, Jea Park, Deanna L. Plubell, Justin Sanders, Previn Naicker +14 more

Proteomic profiling dataset of chemical perturbations in multiple biological backgrounds

Scientific Data(2021)10.1038/s41597-021-01008-4

Top 33%

0.593DataRank

Top 33%17 citations

Karen E. Christianson, Shawn B. Egri, Alvaro Sebastian Vaca Jácome, Katherine C. DeRuff, James Mullahoo +19 more

The ProteomeXchange consortium in 2026: making proteomics data FAIR

Nucleic Acids Research(2025)10.1093/nar/gkaf1146

Top 35%

0.568DataRank

Top 35%33 citations

Nuno Bandeira, Yasset Perez-Riverol, Vagisha Sharma, Jeremy Carver, Luis Mendoza +15 more

New Views of Old Proteins: Clarifying the Enigmatic Proteome

Molecular & Cellular Proteomics(2022)10.1016/j.mcpro.2022.100254

N/A

0.542DataRank · unranked

36 citations

Thomas P. Conrads, Richard R. Drake, Amy E. Herr, Ravi Iyengar, Ryan T. Kelly +15 more

Mass spectrometric identification of immunogenic SARS-CoV-2 epitopes and cognate TCRs

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2111815118

N/A

0.542DataRank · unranked

36 citations

Yulun Chiu, Eric Huang, Michelle Chen, Junmei Wang, Ivy Lai +5 more

Skeletal muscle TFEB signaling promotes central nervous system function and reduces neuroinflammation during aging and neurodegenerative disease

Cell Reports(2023)10.1016/j.celrep.2023.113436

N/A

0.542DataRank · unranked

36 citations

Allison Birnbaum, Anastasia Gromova, Amy Huang, Kailin Liu, Eleanor A. Liu +16 more

Mitochondrial Inorganic Polyphosphate (polyP) Is a Potent Regulator of Mammalian Bioenergetics in SH-SY5Y Cells: A Proteomics and Metabolomics Study

Frontiers in Cell and Developmental Biology(2022)10.3389/fcell.2022.833127

N/A

0.510DataRank · unranked

29 citations

Pedro Urquiza, Fausto Carnevale Neto, James Anderson, Vedangi Hambardikar, Ernest R. Scoma +7 more

piNET: a versatile web platform for downstream analysis and visualization of proteomics data

Nucleic Acids Research(2020)10.1093/nar/gkaa436

N/A

0.500DataRank · unranked

27 citations

Szymon Chojnacki, Marcin Pilarczyk, Mehdi Fazel Najafabadi, Wen Niu, Chuming Chen +17 more

MBNL1 Regulates Programmed Postnatal Switching Between Regenerative and Differentiated Cardiac States

Circulation(2024)10.1161/circulationaha.123.066860

N/A

0.464DataRank · unranked

21 citations

Darrian Bugg, Isabella M. Reichardt, C. Dessirée Ortaç, Abigail Nagle, Jagadambika Gunaje +8 more

Assessment of false discovery rate control in tandem mass spectrometry analysis using entrapment

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.01.596967

N/A

0.449DataRank · unranked

19 citations

Jack Freestone, Michael Riffle, Michael J. MacCoss, William Stafford Noble, Uri Keich +1 more

Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline

Journal of Proteome Research(2023)10.1021/acs.jproteome.2c00670

N/A

0.442DataRank · unranked

18 citations

David Shteynberg, Alex Zelter, Michael Riffle, Andrew S. Lyon, David A. Agard +6 more

Hybrid Quadrupole Mass Filter–Radial Ejection Linear Ion Trap and Intelligent Data Acquisition Enable Highly Multiplex Targeted Proteomics

Journal of Proteome Research(2024)10.1021/acs.jproteome.4c00599

N/A

0.425DataRank · unranked

16 citations

Cristina C. Jacob, Lilian R. Heil, Nicholas Shulman, Brendan MacLean, Michael J. MacCoss +1 more

A second X chromosome improves cognition in aging male and female mice

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.26.605328

N/A

0.312DataRank · unranked

7 citations

Dan Wang, Gennifer E. Merrihew, Michael J. MacCoss, Dena B. Dubal, Francesca Marino

Dynamic Data Independent Acquisition Mass Spectrometry with Real-Time Retrospective Alignment

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.29.518428

N/A

0.269DataRank · unranked

5 citations

Philip M. Remes, Jesse D. Canterbury, Ping Yip, William D. Barshop, Christine C. Wu +2 more

Unveiling Resilience to Alzheimer’s Disease: Insights From Brain Regional Proteomic Markers

Neuroscience Insights(2023)10.1177/26331055231201600

Top 60%

0.247DataRank

Top 60%3 citations

Gennifer E. Merrihew, Eric B. Larson, Jea Park, Deanna L. Plubell, Edward J. Fox +7 more

Comparing peptide identifications by FAIMS versus quadrupole gas-phase fractionation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.01.552989

N/A

0.241DataRank · unranked

4 citations

Christopher D. McGann, Gennifer E. Merrihew, Devin K. Schweppe, Michael J. MacCoss, Danielle A. Faivre

CM1-driven assembly and activation of Yeast γ-Tubulin Small Complex underlies microtubule nucleation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.21.392803

N/A

0.241DataRank · unranked

4 citations

Andrew S. Lyon, Alex Zelter, Shruthi Viswanath, Alison M. Maxwell, Michael J. MacCoss +5 more

Comparison of unit resolution versus high-resolution accurate mass for parallel reaction monitoring

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.04.442680

N/A

0.165DataRank · unranked

2 citations

Philip M. Remes, Michael J. MacCoss, Lilian R. Heil

Tissue-specific metabolomic signatures for a doublesex model of reduced sexual dimorphism

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.11.612537

N/A

0.165DataRank · unranked

2 citations

Benjamin R. Harrison, Richard S. Johnson, Michael J. MacCoss, Daniel E.L. Promislow, Rene Coig

The Crux toolkit for analysis of bottom-up tandem mass spectrometry proteomics data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.02.510538

N/A

0.165DataRank · unranked

2 citations

Frank Lawrence Nii Adoquaye Acquaye, Kishankumar Bhimani, Jimmy K. Eng, William E. Fondrie, Charles E. Grant +7 more

The kinesin motor Kif9 regulates centriolar satellite positioning during interphase

Current Biology(2025)10.1016/j.cub.2025.08.064

N/A

0.165DataRank · unranked

2 citations

Michael Wagenbach, Justin Decarreau, Alex Zelter, Michael J. MacCoss, Trisha N. Davis +2 more

Data from a multi-year targeted proteomics study of a longitudinal birth cohort of type 1 diabetes

Scientific Data(2025)10.1038/s41597-024-04249-1

Top 78%

0.104DataRank

Top 78%1 citations

Ernesto Nakayasu, Javier E. Flores, Jennifer E. Van Eyk, Michael J. MacCoss, Hemang Parikh +3 more

Comprehensive Proteomics Metadata and Integrative Web Portals Facilitate Sharing and Integration of LINCS Multiomics Data

Molecular & Cellular Proteomics(2025)10.1016/j.mcpro.2025.100947

Top 78%

0.104DataRank

Top 78%1 citations

Behrouz Shamsaei, Stephan C. Schürer, Phillip Kogan, Szymon Chojnacki, Michal Kouril +69 more

The kinesin motor Kif9 regulates centriolar satellite positioning and mitotic progression

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.03.587821

N/A

0.104DataRank · unranked

1 citations

Michael Wagenbach, Justin Decarreau, Alex Zelter, Michael J. MacCoss, Trisha N. Davis +2 more

Brain proteomic analysis implicates actin filament processes and injury response in resilience to Alzheimer’s disease

Nature Communications(2023)10.1038/s41467-023-38376-x

N/A

0DataRank · unranked

38 citations

Gennifer E. Merrihew, Eric B. Larson, Jea Park, Deanna L. Plubell, Edward J. Fox +7 more

The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data

Journal of Proteome Research(2023)10.1021/acs.jproteome.2c00615

N/A

0DataRank · unranked

20 citations

Frank Lawrence Nii Adoquaye Acquaye, Kishankumar Bhimani, Jimmy K. Eng, William E. Fondrie, Charles E. Grant +7 more

Metrologically Traceable Quantification of 3 Apolipoprotein E Isoforms in Cerebrospinal Fluid

Clinical Chemistry(2023)10.1093/clinchem/hvad056

N/A

0DataRank · unranked

11 citations

Kellie C. Kuch, Allen Orquillas, Katrina Forrest, Lili Barahona‐Carrillo, Dirk Keene +10 more

Understanding the molecular basis of resilience to Alzheimer’s disease

Frontiers in Neuroscience(2023)10.3389/fnins.2023.1311157

N/A

0DataRank · unranked

11 citations

Eloïse Berson, Thanaphong Phongpreecha, Zhi Huang, Nima Aghaeepour, James Zou +3 more

Dynamic Data-Independent Acquisition Mass Spectrometry with Real-Time Retrospective Alignment

Analytical Chemistry(2023)10.1021/acs.analchem.3c00903

N/A

0DataRank · unranked

13 citations

Philip M. Remes, Jesse D. Canterbury, Ping Yip, William D. Barshop, Christine C. Wu +2 more

Evaluating the Performance of the Astral Mass Analyzer for Quantitative Proteomics Using Data Independent Acquisition

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.03.543570

N/A

0DataRank · unranked

32 citations

Eugen Damoc, Tabiwang N. Arrey, Anna Pashkova, Eduard Denisov, J. Petzoldt +17 more

MBNL1 regulates programmed postnatal switching between regenerative and differentiated cardiac states

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.16.532974

N/A

0DataRank · unranked

3 citations

Darrian Bugg, Isabella M. Reichardt, C. Dessirée Ortaç, Jagadambika Gunaje, Richard S. Johnson +6 more

Mouse sarcopenia model reveals sex- and age-specific differences in phenotypic and molecular characteristics

Journal of Clinical Investigation(2024)10.1172/jci172890

N/A

0DataRank · unranked

45 citations

Kora Krumm, Bárbara Anderson, Anthony Christiani, Lena Strait, Theresa Li +12 more

A Framework for Quality Control in Quantitative Proteomics

Journal of Proteome Research(2024)10.1021/acs.jproteome.4c00363

N/A

0DataRank · unranked

28 citations

Gennifer E. Merrihew, Julia Robbins, Richard S. Johnson, Jea Park, Deanna L. Plubell +12 more

Data-independent acquisition proteomic analysis of the brain microvasculature in Alzheimer’s disease identifies major pathways of dysfunction and upregulation of cytoprotective responses

Fluids and Barriers of the CNS(2024)10.1186/s12987-024-00581-1

N/A

0DataRank · unranked

11 citations

Richard S. Johnson, Mamatha Damodarasamy, Michael J. MacCoss, C. Dirk Keene, William A. Banks +2 more

Interlaboratory Comparison of Antibody-Free LC-MS/MS Measurements of C-peptide and Insulin

Clinical Chemistry(2024)10.1093/clinchem/hvae034

N/A

0DataRank · unranked

10 citations

Elisha Goonatilleke, Tai‐Tu Lin, Maya Hatten-Beck, Michelle A. Emrick, Athena Schepmoes +10 more

Longitudinal Transcriptomic, Proteomic, and Metabolomic Response of Citrus sinensis to Diaphorina citri Inoculation of Candidatus Liberibacter asiaticus

Journal of Proteome Research(2024)10.1021/acs.jproteome.3c00485

N/A

0DataRank · unranked

8 citations

John S. Ramsey, Jaclyn Mahoney, Michael J. MacCoss, Michelle Heck, Carolyn M. Slupsky +1 more

Detection and Quantification of Drug–Protein Adducts in Human Liver

Journal of Proteome Research(2024)10.1021/acs.jproteome.4c00663

N/A

0DataRank · unranked

8 citations

Michael Riffle, David Shteynberg, Guo Zhong, Ellen B. Riddle, Michael R. Hoopmann +6 more

Development of highly multiplex targeted proteomics assays in biofluids using the Stellar mass spectrometer

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.04.597431

N/A

0DataRank · unranked

11 citations

Philip M. Remes, Christine C. Wu, Cristina C. Jacob, Gennifer E. Merrihew, Chris Hsu +7 more

A framework for quality control in quantitative proteomics

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.12.589318

N/A

0DataRank · unranked

6 citations

Gennifer E. Merrihew, Julia Robbins, Richard S. Johnson, Jea Park, Deanna L. Plubell +12 more

Hippocampus Glutathione S Reductase Potentially Confers Genetic Resilience to Cognitive Decline in the AD-BXD Mouse Population

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.09.574219

N/A

0DataRank · unranked

3 citations

Elizabeth Litkowski, Niran Hadad, Amy R. Dunn, Stephanie M. Boas, Jon A. L. Willcox +13 more

Assessment of false discovery rate control in tandem mass spectrometry analysis using entrapment

Nature Methods(2025)10.1038/s41592-025-02719-x

N/A

0DataRank · unranked

39 citations

Jack Freestone, Michael Riffle, Michael J. MacCoss, William Stafford Noble, Uri Keich +1 more

Carafe enables high quality in silico spectral library generation for data-independent acquisition proteomics

Nature Communications(2025)10.1038/s41467-025-64928-4

N/A

0DataRank · unranked

12 citations

Chris Hsu, David Shteynberg, Wen-Feng Zeng, Michael Riffle, Alexis Chang +8 more

Biomarkers, Proteoforms, and Mass Spectrometry–Based Assays for Diabetes Clinical Research

The Journal of Clinical Endocrinology & Metabolism(2025)10.1210/clinem/dgaf159

N/A

0DataRank · unranked

9 citations

Tai‐Tu Lin, Annie Moradian, Qingqing Shen, Salvatore Sechi, Michael J. MacCoss +5 more

Data Independent Acquisition to Inform the Development of Targeted Proteomics Assays Using a Triple Quadrupole Mass Spectrometer

Journal of Proteome Research(2025)10.1021/acs.jproteome.5c00016

N/A

0DataRank · unranked

3 citations

Eric Huang, Sandra E. Spencer Miko, Kathleen L. Poston, Thomas J. Montine, Michael J. MacCoss +1 more

The companion dog as a translational model for Alzheimer's disease: Development of a longitudinal research platform and post mortem protocols

Alzheimer s & Dementia(2025)10.1002/alz.70630

N/A

0DataRank · unranked

3 citations

Emily Hull, Matthew D. Dunbar, Jena Prescott, Amber J. Keyser, Evan L. MacLean +10 more

Limelight: An Open, Web-Based Tool for Visualizing, Sharing, and Analyzing Mass Spectrometry Data from DDA Pipelines

Journal of Proteome Research(2025)10.1021/acs.jproteome.4c00968

N/A

0DataRank · unranked

3 citations

Alex Zelter, Daniel Jaschob, Michael R. Hoopmann, Danielle A. Faivre, Robert L. Moritz +4 more

Quantification of glucagon and oxyntomodulin by protein precipitation-immunoaffinity enrichment-LC-MS/MS

Journal of Mass Spectrometry and Advances in the Clinical Lab(2025)10.1016/j.jmsacl.2025.04.002

N/A

0DataRank · unranked

2 citations

Sara K Shijo, Huu‐Hien Huynh, Katrina Forrest, Michael J. MacCoss, Michelle A. Emrick +3 more

Evaluation of a prototype Orbitrap Astral Zoom mass spectrometer for quantitative proteomics – Beyond identification lists

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.30.657132

N/A

0DataRank · unranked

10 citations

Nicholas Shulman, Hamish Stewart, J. Petzoldt, Anna Pashkova, Deanna L. Plubell +12 more

Improved quantitation in data-independent acquisition proteomics via retention time boundary imputation

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.27.656394

N/A

0DataRank · unranked

2 citations

Michael Riffle, Nicholas Shulman, William E. Fondrie, Christine C. Wu, Danielle P. Johnson Erickson +8 more

Tissue-specific metabolomic signatures for a doublesex model of reduced sexual dimorphism

Royal Society Open Science(2025)10.1098/rsos.250770

N/A

0DataRank · unranked

0 citations

Benjamin R. Harrison, Richard S. Johnson, Michael J. MacCoss, Daniel E.L. Promislow, Rene Coig

Corrigendum to “Comprehensive Proteomics Metadata and Integrative Web Portals Facilitate Sharing and Integration of LINCS Multiomics Data”

Molecular & Cellular Proteomics(2025)10.1016/j.mcpro.2025.100995

N/A

0DataRank · unranked

0 citations

Behrouz Shamsaei, Stephan C. Schürer, Phillip Kogan, Szymon Chojnacki, Michal Kouril +68 more

Genetic variation in the Nr1d1 transcription factor binding site shapes metabolism‐related protein networks associated with cognitive resilience in an Alzheimer's disease mouse reference panel

Alzheimer s & Dementia(2025)10.1002/alz.70896

N/A

0DataRank · unranked

0 citations

Tamara K. Stevenson, Yiding Cao, Lauren A. Fish, Julia Robbins, Gennifer E. Merrihew +5 more

Highly Multiplex Targeted Proteomics Enabled by Real-Time Chromatographic Alignment

Analytical Chemistry(2020)10.1021/acs.analchem.0c02075

N/A

0DataRank · unranked

36 citations

Ping Yip, Michael J. MacCoss, Philip M. Remes

Acarbose has sex-dependent and -independent effects on age-related physical function, cardiac health, and lipid biology

JCI Insight(2020)10.1172/jci.insight.137474

N/A

0DataRank · unranked

32 citations

Sean Louzon, Kaitlyn Pifer, Danielle C. Leander, Gennifer E. Merrihew, Jea H. Park +9 more

Mutual Balance of Histone Deacetylases 1 and 2 and the Acetyl Reader ATAD2 Regulates the Level of Acetylation of Histone H4 on Nascent Chromatin of Human Cells

Molecular and Cellular Biology(2020)10.1128/mcb.00421-19

N/A

0DataRank · unranked

25 citations

John Hernandez-Villanueva, Maria N. Pavlova, Alexander Federation, Michael J. MacCoss, Julia M. Sidorova +1 more

RNA aptamer capture of macromolecular complexes for mass spectrometry analysis

Nucleic Acids Research(2020)10.1093/nar/gkaa542

N/A

0DataRank · unranked

7 citations

Angela Kruse, Abdullah Ozer, Takuya Kajitani, Richard S. Johnson, Michael J. MacCoss +3 more

Proteomics support the threespine stickleback egg coat as a protective oocyte envelope

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.04.976316

N/A

0DataRank · unranked

1 citations

Damien B. Wilburn, Gennifer E. Merrihew, Michael J. MacCoss, Willie J. Swanson, Emily Killingbeck

Substrate Trapping Proteomics Reveals Targets of the βTrCP2/FBXW11 Ubiquitin Ligase

UNC Libraries(2020)10.17615/9f6f-eg70

N/A

0DataRank · unranked

0 citations

Dennis Goldfarb, Tai Young Kim, Randall T. Moon, XianHua Yi, Feng Yan +6 more

Development and Application of Multidimensional Lipid Libraries to Investigate Lipidomic Dysregulation Related to Smoke Inhalation Injury Severity

Journal of Proteome Research(2021)10.1021/acs.jproteome.1c00820

N/A

0DataRank · unranked

45 citations

Michael W. Christopher, Jefferey L. Burgess, Sally R. Littau, Kevin N Foster, Karen Richey +7 more

Comparison of Unit Resolution Versus High-Resolution Accurate Mass for Parallel Reaction Monitoring

Journal of Proteome Research(2021)10.1021/acs.jproteome.1c00377

N/A

0DataRank · unranked

40 citations

Philip M. Remes, Michael J. MacCoss, Lilian R. Heil

CM1-driven assembly and activation of yeast γ-tubulin small complex underlies microtubule nucleation

eLife(2021)10.7554/elife.65168

N/A

0DataRank · unranked

38 citations

Andrew S. Lyon, Alex Zelter, Shruthi Viswanath, Alison M. Maxwell, Michael J. MacCoss +5 more

Does Data-Independent Acquisition Data Contain Hidden Gems? A Case Study Related to Alzheimer’s Disease

Journal of Proteome Research(2021)10.1021/acs.jproteome.1c00558

N/A

0DataRank · unranked

37 citations

Lilian R. Heil, Gennifer E. Merrihew, Jasmeer P. Chhatwal, Martin R. Farlow, Catriona McLean +11 more

Elamipretide (SS-31) treatment attenuates age-associated post-translational modifications of heart proteins

GeroScience(2021)10.1007/s11357-021-00447-6

N/A

0DataRank · unranked

32 citations

Miguel Martín‐Pérez, Tong Zhang, Matthew Gaffrey, Gennifer E. Merrihew, Eric Huang +9 more

Slowed Protein Turnover in Aging Drosophila Reflects a Shift in Cellular Priorities

The Journals of Gerontology Series A(2021)10.1093/gerona/glab015

N/A

0DataRank · unranked

15 citations

Ruth E. Thomas, Gennifer E. Merrihew, Michael J. MacCoss, Leo J. Pallanck, Evelyn S. Vincow

Prebiotic Membranes and Micelles Do Not Inhibit Peptide Formation During Dehydration

ChemBioChem(2021)10.1002/cbic.202100614

N/A

0DataRank · unranked

9 citations

Brennan L. Kessenich, Avijit Hazra, Julia Nguyen, Richard S. Johnson, Michael J. MacCoss +4 more

Lysosomal targetomics of ghr KO mice shows chaperone-mediated autophagy degrades nucleocytosolic acetyl-coA enzymes

Autophagy(2021)10.1080/15548627.2021.1990670

N/A

0DataRank · unranked

15 citations

Alexander C. Monovich, Eric Huang, E Henry, Dennis N. Boynton, Logan J. Beckmann +3 more

Tandem Mass Spectrometry–Based Amyloid Typing Using Manual Microdissection and Open-Source Data Processing

American Journal of Clinical Pathology(2021)10.1093/ajcp/aqab185

N/A

0DataRank · unranked

9 citations

Kelly D. Smith, Han-Yin Yang, Clark M. Henderson, Hannah Pflaum, Melissa Lerch +7 more

Staging Encystation Progression in Giardia lamblia Using Encystation-Specific Vesicle Morphology and Associating Molecular Markers

Frontiers in Cell and Developmental Biology(2021)10.3389/fcell.2021.662945

N/A

0DataRank · unranked

13 citations

R. Sutanto, Richard S. Johnson, Han-Wei Shih, Germain C. M. Alas, Jana Krtková +3 more

Proteomics support the threespine stickleback egg coat as a protective oocyte envelope

Molecular Reproduction and Development(2021)10.1002/mrd.23517

N/A

0DataRank · unranked

5 citations

Damien B. Wilburn, Gennifer E. Merrihew, Michael J. MacCoss, Willie J. Swanson, Emily Killingbeck

Immunogenic SARS-CoV2 Epitopes Defined by Mass Spectrometry

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.20.453160

N/A

0DataRank · unranked

4 citations

Yulun Chiu, Eric Huang, Michelle Chen, Junmei Wang, Ivy Lai +5 more

Development and Application of Multidimensional Lipid Libraries to Investigate Lipidomic Dysregulation Related to Smoke Inhalation Injury Severity

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.13.464246

N/A

0DataRank · unranked

4 citations

Michael W. Christopher, Jefferey L. Burgess, Sally R. Littau, Brian Pratt, Nicholas Shulman +5 more

Elamipretide (SS-31) Treatment Attenuates Age-Associated Post-Translational Modifications of Heart Proteins

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.06.455402

N/A

0DataRank · unranked

2 citations

Miguel Martín‐Pérez, Tong Zhang, Matthew Gaffrey, Gennifer E. Merrihew, Eric Huang +9 more

Stage-specific, morphological and molecular markers of encystation in Giardia lamblia

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.01.429238

N/A

0DataRank · unranked

0 citations

R. Sutanto, Richard S. Johnson, Han-Wei Shih, Jana Krtková, Michael J. MacCoss +2 more

Spontaneous Isomerization of Asp387 in Tau is Diagnostic for Alzheimer’s Disease: An Endogenous Indicator of Reduced Autophagic Flux

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.21.440819

N/A

0DataRank · unranked

0 citations

Lilian R. Heil, Gennifer E. Merrihew, Jasmeer P. Chhatwal, Martin R. Farlow, Catriona McLean +10 more

A flexible workflow for building spectral libraries from narrow window data independent acquisition mass spectrometry data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.22.469568

N/A

0DataRank · unranked

0 citations

William E. Fondrie, Christopher D. McGann, Alexander Federation, William Stafford Noble, Michael J. MacCoss +2 more

Putting Humpty Dumpty Back Together Again: What Does Protein Quantification Mean in Bottom-Up Proteomics?

Journal of Proteome Research(2022)10.1021/acs.jproteome.1c00894

N/A

0DataRank · unranked

94 citations

Lukas Käll, Bobbie‐Jo Webb‐Robertson, Lisa Bramer, Ashley N. Ives, Neil L. Kelleher +5 more

A male steroid controls female sexual behaviour in the malaria mosquito

Nature(2022)10.1038/s41586-022-04908-6

N/A

0DataRank · unranked

35 citations

Evdoxia G. Kakani, Enzo Mameli, Charles Vidoudez, Sara N. Mitchell, Gennifer E. Merrihew +6 more

Multiplexed quantification of insulin and C-peptide by LC-MS/MS without the use of antibodies

Journal of Mass Spectrometry and Advances in the Clinical Lab(2022)10.1016/j.jmsacl.2022.06.003

N/A

0DataRank · unranked

22 citations

Elisha Goonatilleke, Michael J. MacCoss, Michelle A. Emrick, Andrew N. Hoofnagle, North Foulon

Building Spectral Libraries from Narrow-Window Data-Independent Acquisition Mass Spectrometry Data

Journal of Proteome Research(2022)10.1021/acs.jproteome.1c00895

N/A

0DataRank · unranked

18 citations

William E. Fondrie, Christopher D. McGann, Alexander Federation, William Stafford Noble, Michael J. MacCoss +2 more

Cullin-independent recognition of HHARI substrates by a dynamic RBR catalytic domain

Structure(2022)10.1016/j.str.2022.05.017

N/A

0DataRank · unranked

16 citations

Alex Zelter, Maria K. Janowska, Michael Riffle, Nicholas Shulman, Brendan MacLean +8 more

TurnoveR: A Skyline External Tool for Analysis of Protein Turnover in Metabolic Labeling Studies

Journal of Proteome Research(2022)10.1021/acs.jproteome.2c00173

N/A

0DataRank · unranked

8 citations

Nicholas Shulman, Cameron Wehrfritz, Alexandra N. Marsh, Samah Shah, Jacob Rose +9 more

De novo design of high-affinity protein binders to bioactive helical peptides

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.10.519862

N/A

0DataRank · unranked

22 citations

Philip J. Y. Leung, Isaac D. Lutz, Preetham Venkatesh, Joseph L. Watson, Fabian Hink +18 more

Skeletal Muscle TFEB Signaling Promotes Central Nervous System Function and Reduces Neuroinflammation during Aging and Neurodegenerative Disease

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.07.482891

N/A

0DataRank · unranked

9 citations

Allison Birnbaum, Anastasia Gromova, Amy Huang, Kailin Liu, Eleanor A. Liu +16 more

Profiling Mouse Brown and White Adipocytes to Identify Metabolically Relevant Small ORFs and Functional Microproteins

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.12.484025

N/A

0DataRank · unranked

2 citations

Sally Lyons‐Abbott, Angie L. Bookout, Cynthia J. Donaldson, Joan Vaughan, Calvin J. Lau +24 more

Evaluating the Performance of the Astral Mass Analyzer for Quantitative Proteomics Using Data-Independent Acquisition

Journal of Proteome Research(2023)10.1021/acs.jproteome.3c00357

N/A

0DataRank · unranked

231 citations

Eugen Damoc, Tabiwang N. Arrey, Anna Pashkova, Eduard Denisov, J. Petzoldt +17 more

De novo design of high-affinity binders of bioactive helical peptides

Nature(2023)10.1038/s41586-023-06953-1

N/A

0DataRank · unranked

230 citations

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