🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Matthew L. Jenior

University of Virginia

ORCID: 0000-0003-1884-3543

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 10 papers. Top paper: “Reconstructor: a COBRApy compatible tool for automated genome-scale metabolic network reconstruction with parsimonious flux-based gap-filling”.

Reconstructor: a COBRApy compatible tool for automated genome-scale metabolic network reconstruction with parsimonious flux-based gap-filling

Bioinformatics(2023)10.1093/bioinformatics/btad367

N/A

0.464DataRank · unranked

21 citations

Emma M. Glass, Jason A. Papin, Matthew L. Jenior

Quantifying cumulative phenotypic and genomic evidence for procedural generation of metabolic network reconstructions

PLoS Computational Biology(2022)10.1371/journal.pcbi.1009341

N/A

0.345DataRank · unranked

9 citations

Benjamin C. Neubert, Matthew L. Jenior, Jason A. Papin, Thomas J. Moutinho

Lewis Blood-group Antigens Are Associated With Altered Susceptibility to Shigellosis

Clinical Infectious Diseases(2020)10.1093/cid/ciaa1409

N/A

0.241DataRank · unranked

4 citations

Erin Weddle, Lauren K. Yum, Ye Lin, Matthew L. Jenior, Benjamin Lee +8 more

Reconstructor: A COBRApy compatible tool for automated genome-scale metabolic network reconstruction with parsimonious flux-based gap-filling

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.17.508371

N/A

0DataRank · unranked

4 citations

Emma M. Glass, Jason A. Papin, Matthew L. Jenior

Network analysis of toxin production in Clostridioides difficile identifies key metabolic dependencies

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011076

N/A

0DataRank · unranked

12 citations

Matthew L. Jenior, Glynis L. Kolling, Jason A. Papin, Deborah Powers

Systems-ecology designed bacterial consortium protects from severe Clostridioides difficile infection

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.08.552483

N/A

0DataRank · unranked

8 citations

Jhansi L. Leslie, Glynis L. Kolling, Laurie Archbald‐Pannone, Deborah Powers, William A. Petri Jr. +2 more

Ten simple rules to increase computational skills among biologists with Code Clubs

PLoS Computational Biology(2020)10.1371/journal.pcbi.1008119

N/A

0DataRank · unranked

12 citations

Nicholas A. Lesniak, Marcy J. Balunas, Lucas Bishop, William L. Close, Matthew K. Doherty +15 more

Identifying metabolic adaptations characteristic of cardiotoxicity using paired transcriptomics and metabolomics data integrated with a computational model of heart metabolism

PLoS Computational Biology(2024)10.1371/journal.pcbi.1011919

N/A

0DataRank · unranked

6 citations

Connor J. Moore, Kristopher D. Rawls, Matthew L. Jenior, Bryan Chun, Sarbajeet Nagdas +5 more

Computational approaches to understanding Clostridioides difficile metabolism and virulence

Current Opinion in Microbiology(2021)10.1016/j.mib.2021.11.002

N/A

0DataRank · unranked

4 citations

Jason A. Papin, Matthew L. Jenior

Genome-scale metabolic modeling reveals increased reliance on valine catabolism in clinical isolates of Klebsiella pneumoniae

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.08.459555

N/A

0DataRank · unranked

1 citations

Mary E. Dickenson, Jason A. Papin, Matthew L. Jenior