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Reconstructor: a COBRApy compatible tool for automated genome-scale metabolic network reconstruction with parsimonious flux-based gap-filling

Bioinformatics(2023)10.1093/bioinformatics/btad367Source: DataRank Database

Reconstructor: a COBRApy compatible tool for automated genome-scale metabolic network reconstruction with parsimonious flux-based gap-filling is a research paper published in Bioinformatics (2023). On theSindex it has a DataRank of 0. It has been cited 21 times.

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Scored on demand from live citation data

Open Access21 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (8 grants)Impact (FWCI 2.56)OA: goldTopics (30)IDs (PubMed, PMC, OpenAlex)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (3)

Emma M. Glass ORCID,Jason A. Papin ORCID,Matthew L. Jenior ORCID

Live enrichment

PubMed:37279743 PMC:PMC10275916 OpenAlex:https://openalex.org/W4379599517

National Science Foundation

Grant: 1842490

Graduate Research Fellowship Program (GRFP)

NIGMS NIH HHS

Grant: T32 GM145443

NIAID NIH HHS

Grant: R01 AI154242

NCCIH NIH HHS

Grant: R01 AT010253

National Institutes of Health

Grant: 5R01AI154242-04

Multi-scale model of microbial phenotype modulation by mucins

National Institutes of Health

Grant: 5T32GM145443-04

Interdisciplinary Training in Systems & Biomolecular Data Science

National Institutes of Health

Grant: 5R01AT010253-03

Systems biology of microbe-mediated glucosinolate bioconversion in inflammatory bowel disease

National Institutes of Health

FWCI

2.56

Citation Percentile

0.9%

Citation Trend

2022

2023

2024

2025

2026

goldLicense: cc-by

journalhttps://academic.oup.com/bioinformatics/article-pdf/39/6/btad367/50632973/btad367.pdf

publisherhttps://academic.oup.com/bioinformatics/article-pdf/39/6/btad367/50632973/btad367.pdf

publisherhttps://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad367/50518967/btad367.pdf

journalhttps://doi.org/10.1093/bioinformatics/btad367

repositoryhttps://pubmed.ncbi.nlm.nih.gov/37279743

Fields of Study

Microbial Metabolic Engineering and BioproductionBioinformatics and Genomic NetworksGenomics and Phylogenetic Studies0301 basic medicine03 medical and health sciences0206 medical engineering02 engineering and technologySoftwareGenomeBacteriaMetabolic Networks and PathwaysDatabases, Factual

MeSH Terms

BacteriaSoftwareDatabases, FactualGenomeMetabolic Networks and Pathways

Keywords

SBMLComputer sciencePython (programming language)ImplementationProgramming languageOperating systemXMLApplications NoteGenomeBacteriaDatabases, FactualSoftwareMetabolic Networks and Pathways

Sustainable Development Goals

SDG 0: Life in Land