Yu Shyr

ORCID: 0000-0003-2086-9670

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 6%percentile

0.201Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Associations of influenza vaccination with severity of immune-related adverse events in patients with advanced thoracic cancers on immune checkpoint inhibitors

ERJ Open Research(2022)10.1183/23120541.00684-2021

Top 65%

0.201DataRank

Top 65%2 citations

Li‐Ching Huang, Jennifer G. Whisenant, Sally J. York, Travis Osterman, Jennifer A. Lewis +7 more

Papers

Driven by 60 papers — median percentile 35. Top paper: “Clinical impact of COVID-19 on patients with cancer (CCC19): a cohort study”.

Clinical impact of COVID-19 on patients with cancer (CCC19): a cohort study

The Lancet(2020)10.1016/s0140-6736(20)31187-9

N/A

11.9DataRank · unranked

1804 citations

Toni K. Choueiri, Dimpy P. Shah, Yu Shyr, Samuel M. Rubinstein, Donna R. Rivera +95 more

Association of clinical factors and recent anticancer therapy with COVID-19 severity among patients with cancer: a report from the COVID-19 and Cancer Consortium

Annals of Oncology(2021)10.1016/j.annonc.2021.02.024

N/A

6.8DataRank · unranked

328 citations

Ali Raza Khaki, Trisha M. Wise‐Draper, Benjamin French, Conor Hennessy, Chih–Yuan Hsu +95 more

COVID-19 vaccination and breakthrough infections in patients with cancer

Annals of Oncology(2021)10.1016/j.annonc.2021.12.006

N/A

3.9DataRank · unranked

102 citations

Chris Labaki, Chih–Yuan Hsu, Ziad Bakouny, Nino Balanchivadze, Stephanie Berg +34 more

Interplay of Immunosuppression and Immunotherapy Among Patients With Cancer and COVID-19

JAMA Oncology(2022)10.1001/jamaoncol.2022.5357

N/A

1.5DataRank · unranked

63 citations

Chris Labaki, Punita Grover, Joy Awosika, Shuchi Gulati, Chih–Yuan Hsu +95 more

Analysis of Cancer Survival Associated With Immune Checkpoint Inhibitors After Statistical Adjustment

JAMA Network Open(2022)10.1001/jamanetworkopen.2022.27211

N/A

1.1DataRank · unranked

29 citations

Chih–Yuan Hsu, Lynne D. Berry, Paul A. Bunn, Yu Shyr, Emily Pei-Ying Lin

Identification and multimodal characterization of a specialized epithelial cell type associated with Crohn’s disease

Nature Communications(2024)10.1038/s41467-024-51580-7

N/A

1.1DataRank · unranked

49 citations

Alan J. Simmons, Caroline V. Hawkins, Sophie Chiron, Marisol Ramirez‐Solano, Naila Tasneem +34 more

Atezolizumab in Combination With Carboplatin and Survival Outcomes in Patients With Metastatic Triple-Negative Breast Cancer

JAMA Oncology(2023)10.1001/jamaoncol.2023.5424

N/A

0.911DataRank · unranked

34 citations

Vandana G. Abramson, Elizabeth Claire Dees, Payal D. Shah, Tarah J. Ballinger, Claudine Isaacs +12 more

Utilization of COVID-19 Treatments and Clinical Outcomes among Patients with Cancer: A COVID-19 and Cancer Consortium (CCC19) Cohort Study

Cancer Discovery(2020)10.1158/2159-8290.cd-20-0941

N/A

0.740DataRank · unranked

138 citations

Solange Peters, Orestis A. Panagiotou, Dimpy P. Shah, Nicole M. Kuderer, Chih–Yuan Hsu +40 more

Lung Cancer and Severe Acute Respiratory Syndrome Coronavirus 2 Infection: Identifying Important Knowledge Gaps for Investigation

Journal of Thoracic Oncology(2021)10.1016/j.jtho.2021.11.001

N/A

0.601DataRank · unranked

54 citations

Noy Meshulami, Alessandro Russo, Florian Krammer, Adolfo Garcı́a-Sastre, Philip C. Mack +14 more

Breakthrough SARS-CoV-2 infections among patients with cancer following two and three doses of COVID-19 mRNA vaccines: a retrospective observational study from the COVID-19 and Cancer Consortium

The Lancet Regional Health - Americas(2023)10.1016/j.lana.2023.100445

N/A

0.553DataRank · unranked

39 citations

Chris Labaki, Ziad Bakouny, Chih–Yuan Hsu, Andrew Schmidt, Gilberto Lopes +39 more

aKNNO: single-cell and spatial transcriptomics clustering with an optimized adaptive k-nearest neighbor graph

Genome biology(2024)10.1186/s13059-024-03339-y

N/A

0.532DataRank · unranked

11 citations

Yu Shyr, Qi Liu, Jia Li

Expression of CCL2/CCR2 signaling proteins in breast carcinoma cells is associated with invasive progression

Scientific Reports(2021)10.1038/s41598-021-88229-0

N/A

0.515DataRank · unranked

30 citations

Diana S. Acevedo, Curtis Smart, Brandon Zinda, Nadia Alissa, K. A. Warren +10 more

Systematic Assessment of Small RNA Profiling in Human Extracellular Vesicles

Cancers(2023)10.3390/cancers15133446

N/A

0.482DataRank · unranked

10 citations

Hua-Chang Chen, Quanhu Sheng, T. Renee Dawson, Robert J. Coffey, James G. Patton +4 more

Longitudinal COVID-19-vaccination-induced antibody responses and Omicron neutralization in patients with lung cancer

Cancer Cell(2022)10.1016/j.ccell.2022.04.012

N/A

0.442DataRank · unranked

18 citations

Jorge Gómez, Ananda M. Rodilla, Juan Manuel Carreño, Chih–Yuan Hsu, Christian Rolfo +43 more

Phytoestrogens and lung cancer risk: a nested case-control study in never-smoking Chinese women

American Journal of Clinical Nutrition(2021)10.1093/ajcn/nqab358

N/A

0.434DataRank · unranked

17 citations

Qiuyin Cai, Yu‐Tang Gao, Adrian A. Franke, Xianglan Zhang, Yingya Zhao +8 more

Effects of BRCA1 Transgene Expression on Murine Mammary Gland Development and Mutagen-Induced Mammary Neoplasia

International Journal of Biological Sciences(2007)10.7150/ijbs.3.281

N/A

0.425DataRank · unranked

16 citations

Cindy J. Yee, Mel Campbell, Randall L. Woltjer, Rebecca L. Townsend, Riet van der Meer +5 more

What Constitutes a Valid Surrogate End Point in Cancer Clinical Trials?

JAMA Oncology(2020)10.1001/jamaoncol.2020.1847

N/A

0.373DataRank · unranked

11 citations

Derek Shyr, Yu Shyr

Preliminary efficacy data of platinum-pretreated small cell lung cancer (SCLC) cohort of NCI 9881 study: A phase II study of cediranib in combination with olaparib in advanced solid tumors.

Journal of Clinical Oncology(2020)10.1200/jco.2020.38.15_suppl.9065

N/A

0.360DataRank · unranked

10 citations

Navid Hafez, Hatem Soliman, Siqing Fu, Shumei Kato, Primo N. Lara +12 more

Power and sample sizes estimation in clinical trials with treatment switching in intention-to-treat analysis: a simulation study

BMC Medical Research Methodology(2023)10.1186/s12874-023-01864-1

N/A

0.330DataRank · unranked

8 citations

Chih–Yuan Hsu, Yu Shyr, Lejun Deng

Preliminary efficacy data of triple-negative breast cancer cohort of NCI 9881 study: A phase II study of cediranib in combination with olaparib in advanced solid tumors.

Journal of Clinical Oncology(2020)10.1200/jco.2020.38.15_suppl.1077

N/A

0.312DataRank · unranked

7 citations

Hatem Soliman, Siqing Fu, Karen A. Gelmon, Albiruni Ryan Abdul Razak, Pamela N. Münster +11 more

A Grant-Based Experiment to Train Clinical Investigators: The AACR/ASCO Methods in Clinical Cancer Research Workshop

Clinical Cancer Research(2021)10.1158/1078-0432.ccr-21-1799

N/A

0.292DataRank · unranked

6 citations

Gary M. Clark, Charles A. Coltman, Mary L. Disis, S. Gail Eckhardt, Lee M. Ellis +21 more

Podocyte-Related Mechanisms Underlying Survival Benefit of Long-Term Angiotensin Receptor Blocker

International Journal of Molecular Sciences(2022)10.3390/ijms23116018

N/A

0.292DataRank · unranked

6 citations

Dan Gao, Vittorio Albertazzi, Jianyong Zhong, Li‐Jun Ma, Liping Du +5 more

Interoperability of phenome-wide multimorbidity patterns: a comparative study of two large-scale EHR systems

medRxiv(2024)10.1101/2024.03.28.24305045

N/A

0.269DataRank · unranked

5 citations

Tess Vessels, Karmel W. Choi, Siwei Zhang, Yajing Li, Lide Han +21 more

Genome sequencing of 35,024 predominantly African ancestry persons addresses gaps in genomics and healthcare

medRxiv(2025)10.1101/2025.10.30.25338549

N/A

0.241DataRank · unranked

4 citations

Mojgan Babanejad, James Baker, Xavier Bledsoe, Freida Blostein, Robert W. Corty +26 more

Associations of influenza vaccination with severity of immune-related adverse events in patients with advanced thoracic cancers on immune checkpoint inhibitors

ERJ Open Research(2022)10.1183/23120541.00684-2021

Top 65%

0.201DataRank

Top 65%2 citations

Li‐Ching Huang, Jennifer G. Whisenant, Sally J. York, Travis Osterman, Jennifer A. Lewis +7 more

stImage: a versatile framework for optimizing spatial transcriptomic analysis through customizable deep histology and location informed integration

Briefings in Bioinformatics(2025)10.1093/bib/bbaf429

N/A

0.165DataRank · unranked

2 citations

Haichun Yang, Ruining Deng, Yuankai Huo, Qi Liu, Yu Shyr +2 more

Time-Dependent Effects of Clinical Interventions on SARS-CoV-2 Immunity in Patients with Lung Cancer

Vaccines(2024)10.3390/vaccines12070713

N/A

0.104DataRank · unranked

1 citations

Chih–Yuan Hsu, Ananda M. Rodilla, Jorge Gómez, Jazz Cagan, Yuanhui Huang +19 more

A distribution-free and analytic method for power and sample size calculation in single-cell differential expression

Bioinformatics(2024)10.1093/bioinformatics/btae540

N/A

0.104DataRank · unranked

1 citations

Qi Liu, Yu Shyr, Chih–Yuan Hsu

Identification and Characterization of Avoidable Hospital Admissions in Patients With Lung Cancer

Journal of the National Comprehensive Cancer Network(2023)10.6004/jnccn.2023.7049

N/A

0DataRank · unranked

7 citations

Xuanyi Li, Li‐Ching Huang, Amanda S. Cass, Wade T. Iams, Emily A. Skotte +9 more

A Specialized Epithelial Cell Type Regulating Mucosal Immunity and Driving Human Crohn’s Disease

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.30.560293

N/A

0DataRank · unranked

10 citations

Alan J. Simmons, Sophie Chiron, Marisol Ramirez‐Solano, Naila Tasneem, Harsimran Kaur +24 more

Data from A Kinome-Wide Screen Identifies the Insulin/IGF-I Receptor Pathway as a Mechanism of Escape from Hormone Dependence in Breast Cancer

(2023)10.1158/0008-5472.c.6503028.v1

N/A

0DataRank · unranked

0 citations

Todd W. Miller, Justin M. Balko, María G. Kuba, Violeta Sánchez, R. Adam Smith +9 more

PheWAS-ME: a web-app for interactive exploration of multimorbidity patterns in PheWAS

Bioinformatics(2020)10.1093/bioinformatics/btaa870

N/A

0DataRank · unranked

10 citations

Jana K. Shirey-Rice, Yu Shyr, Joshua C Denny, Jill M. Pulley, Yaomin Xu +1 more

Proportional Hazards Violations in Phase III Cancer Clinical Trials: A Potential Source of Trial Misinterpretation

Clinical Cancer Research(2024)10.1158/1078-0432.ccr-24-0566

N/A

0DataRank · unranked

13 citations

Zachary R. McCaw, Alex Koong, Christine Lin, Joseph Abi Jaoude, Roshal R. Patel +14 more

Oligoclonal CD8+ T Cells Play a Critical Role in the Development of Hypertension

UNC Libraries(2020)10.17615/yjnv-8m57

N/A

0DataRank · unranked

21 citations

Yu Shyr, Jing Wu, David G. Harrison, Hana A. Itani, Daniel W. Trott +9 more

scKWARN: Kernel-weighted-average robust normalization for single-cell RNA-seq data

Bioinformatics(2024)10.1093/bioinformatics/btae008

N/A

0DataRank · unranked

2 citations

Chih‐Han Chang, Qi Liu, Yu Shyr, Chih–Yuan Hsu

EVPsort: An Atlas of Small ncRNA Profiling and Sorting in Extracellular Vesicles and Particles

Journal of Molecular Biology(2024)10.1016/j.jmb.2024.168571

N/A

0DataRank · unranked

2 citations

Jing Wang, Robert J. Coffey, James G. Patton, Alissa M. Weaver, Yu Shyr +2 more

FindAdapt: A python package for fast and accurate adapter detection in small RNA sequencing

PLoS Computational Biology(2024)10.1371/journal.pcbi.1011786

N/A

0DataRank · unranked

7 citations

Jing Wang, Yu Shyr, Qi Liu, Hua-Chang Chen

Data from A Large-Scale Meta-Analysis Reveals Positive Feedback between Macrophages and T Cells That Sensitizes Tumors to Immunotherapy

(2024)10.1158/0008-5472.c.7075693

N/A

0DataRank · unranked

0 citations

Qi Liu, Yu Shyr, Jing Yang

VICTOR: Validation and inspection of cell type annotation through optimal regression

Computational and Structural Biotechnology Journal(2024)10.1016/j.csbj.2024.08.028

N/A

0DataRank · unranked

0 citations

Chih–Yuan Hsu, Qi Liu, Yu Shyr, Chia-Jung Chang

Power and sample size calculation for non-inferiority trials with treatment switching in intention-to-treat analysis comparing RMSTs

Research Square(2024)10.21203/rs.3.rs-5418253/v1

N/A

0DataRank · unranked

0 citations

Chih–Yuan Hsu, Yu Shyr, Austin Shih

Results of the Phase I/II Study and Preliminary B-cell Gene Signature of Combined Inhibition of Glutamine Metabolism and EGFR in Colorectal Cancer

Clinical Cancer Research(2025)10.1158/1078-0432.ccr-24-3133

N/A

0DataRank · unranked

16 citations

Seong-Woo Bae, Jennifer G. Whisenant, Gregory D. Ayers, Quanhu Sheng, Todd E. Peterson +15 more

Power and sample size calculation for non-inferiority trials with treatment switching in intention-to-treat analysis comparing RMSTs

BMC Medical Research Methodology(2025)10.1186/s12874-025-02604-3

N/A

0DataRank · unranked

1 citations

Chih-Yuan Hsu, Yu Shyr, Austin Shih

Associations of COVID-19 vaccination with risks for post-infectious cardiovascular complications: an international cohort study in cancer patients with SARS-CoV-2 infection

The Lancet Regional Health - Americas(2025)10.1016/j.lana.2025.101038

N/A

0DataRank · unranked

0 citations

Chih–Yuan Hsu, Sanjay Mishra, Elizabeth A. Griffiths, Brahm H. Segal, Clara Hwang +30 more

Prediction models for breast cancer prognosis among Asian women

Cancer(2021)10.1002/cncr.33425

N/A

0DataRank · unranked

14 citations

Yufan Chen, Sarah Nechuta, Hui Cai, Kai Gu, Liang Shi +5 more

Distinct and convergent effects of SF3B1 mutations in human breast cancer

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2505374122

N/A

0DataRank · unranked

0 citations

Christin I. Keeton, Irika R. Sinha, Jonathan P. Ling, Yu Wang, Lauren Ha +17 more

Breakthrough SARS-CoV-2 infections among patients with cancer following two and three doses of COVID-19 mRNA vaccines: a retrospective observational study from the COVID-19 and Cancer Consortium

UNC Libraries(2025)10.17615/bna9-v350

N/A

0DataRank · unranked

0 citations

Sanjay Mishra, Karen Russell, Samuel M. Rubinstein, Blau, Sibel, Daniel Y. Reuben +39 more

Microenvironment-aware spatial modeling for accurate inference of cell identity

Nucleic Acids Research(2025)10.1093/nar/gkaf1477

N/A

0DataRank · unranked

0 citations

Yu Wang, Chih–Yuan Hsu, Celestine N. Wanjalla, Ken S Lau, Yu Shyr +1 more

eNRSA: a faster and more powerful approach for nascent transcriptome analysis

GigaScience(2025)10.1093/gigascience/giaf071

N/A

0DataRank · unranked

0 citations

Hua-Chang Chen, Scott W. Hiebert, Quanhu Sheng, William P. Tansey, Yu Shyr +2 more

Sapanisertib, a dual mTORC1/2 inhibitor, for TSC1- or TSC2-mutated metastatic urothelial carcinoma (mUC).

Journal of Clinical Oncology(2021)10.1200/jco.2021.39.6_suppl.431

N/A

0DataRank · unranked

10 citations

Matthew I. Milowsky, Noah M. Hahn, David J. Kwiatkowski, Alicia K. Morgans, Nancy B. Davis +10 more

Analysis of homologous recombination DNA repair gene mutation status in patients with metastatic small cell lung cancer treated with cediranib and olaparib on NCI 9881 study.

Journal of Clinical Oncology(2021)10.1200/jco.2021.39.15_suppl.8563

N/A

0DataRank · unranked

0 citations

Marc R. Radke, Navid Hafez, Hatem Soliman, Siqing Fu, Shumei Kato +11 more

Biomarker Discovery and Validation: Statistical Considerations

Journal of Thoracic Oncology(2021)10.1016/j.jtho.2021.01.1616

N/A

0DataRank · unranked

238 citations

Stefan Michiels, Yu Shyr, Alex A. Adjei, Ann L. Oberg, Fang‐Shu Ou

A Single Nucleotide Polymorphism in SH2B3/LNK Promotes Hypertension Development and Renal Damage

Circulation Research(2022)10.1161/circresaha.121.320625

N/A

0DataRank · unranked

36 citations

Samuel Hank, Bethany L. Dale, Lauren E. Himmel, Xue Zhong, C. Duncan Smart +10 more

TG-Interacting Factor 1 expression quantitatively impacts survival in acute myeloid leukemia

medRxiv(2020)10.1101/2020.02.04.20020537

N/A

0DataRank · unranked

0 citations

Julie A. Means‐Powell, Danko Martincic, Vladimir D. Kravtsov, Yu Shyr, John P. Greer +6 more

Dysregulated ligand–receptor interactions from single-cell transcriptomics

Bioinformatics(2022)10.1093/bioinformatics/btac294

N/A

0DataRank · unranked

20 citations

Chih–Yuan Hsu, Jia Li, Yu Shyr, Qi Liu

Changing paradigm in oncology clinical trials: Cox-TEL—Adjustment made ready for early crossover and tail tale.

Journal of Clinical Oncology(2020)10.1200/jco.2020.38.15_suppl.e15067

N/A

0DataRank · unranked

2 citations

Chih–Yuan Hsu, Pan‐Chyr Yang, Yu Shyr, Emily Pei-Ying Lin

Endogenous sex hormones, aromatase activity and lung cancer risk in postmenopausal never‐smoking women

International Journal of Cancer(2022)10.1002/ijc.34005

N/A

0DataRank · unranked

14 citations

Yu‐Tang Gao, Xianglan Zhang, Alan L. Rockwood, Mark M. Kushnir, Qiuyin Cai +9 more

Cox Proportional Hazard Ratios Overestimate Survival Benefit of Immune Checkpoint Inhibitors: Cox-TEL Adjustment and Meta-Analyses of Programmed Death-Ligand 1 Expression and Immune Checkpoint Inhibitor Survival Benefit

Journal of Thoracic Oncology(2022)10.1016/j.jtho.2022.08.010

N/A

0DataRank · unranked

1 citations

Chih–Yuan Hsu, Jeng-Fong Chiou, Lynne D. Berry, Leora Horn, Paul A. Bunn +5 more

Scalable and model-free detection of spatial patterns and colocalization

Genome Research(2022)10.1101/gr.276851.122

N/A

0DataRank · unranked

61 citations

Chih–Yuan Hsu, Yu Shyr, Qi Liu

Power and sample sizes estimation in clinical trials with treatment switching in intention-to-treat analysis: a simulation study

medRxiv(2022)10.1101/2022.09.07.22279686

N/A

0DataRank · unranked

0 citations

Chih–Yuan Hsu, Yu Shyr, Lejun Deng

A Large-Scale Meta-Analysis Reveals Positive Feedback between Macrophages and T Cells That Sensitizes Tumors to Immunotherapy

Cancer Research(2023)10.1158/0008-5472.can-23-2006

N/A

0DataRank · unranked

19 citations

Qi Liu, Yu Shyr, Jing Yang

Yu Shyr

Indexed papers

Top data-sharing exemplar

Papers