Quanming Shi

Also affiliated with Stanford University

Immunology and MicrobiologyBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 25 papers. Top paper: “Genome-wide programmable transcriptional memory by CRISPR-based epigenome editing”.

Genome-wide programmable transcriptional memory by CRISPR-based epigenome editing

Cell(2021)10.1016/j.cell.2021.03.025

N/A

7.5DataRank · unranked

771 citations

Chen Jin, Greg C. Pommier, J. Zachery Cogan, Joseph M. Replogle, Carmen Adriaens +15 more

Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions

Cell(2021)10.1016/j.cell.2021.03.012

N/A

5.4DataRank · unranked

220 citations

Julia A. Belk, Yanyan Qi, Yuki Yasumoto, Jin Wei, Mia Madel Alfajaro +14 more

Inducible lncRNA transgenic mice reveal continual role of HOTAIR in promoting breast cancer metastasis

eLife(2022)10.7554/elife.79126

N/A

1.3DataRank · unranked

44 citations

Liuyi Yang, Karen Tolentino, Guiping Wang, Yang Zhao, Ulrike Litzenburger +13 more

ecDNA hubs drive cooperative intermolecular oncogene expression

Nature(2021)10.1038/s41586-021-04116-8

N/A

0.878DataRank · unranked

347 citations

Kathryn E. Yost, Liangqi Xie, Quanming Shi, Konstantin Helmsauer, Jens Luebeck +29 more

Divergent clonal differentiation trajectories of T cell exhaustion

Nature Immunology(2022)10.1038/s41590-022-01337-5

N/A

0.818DataRank · unranked

233 citations

Kathryn E. Yost, Sunnie Hsiung, Katalin Sandor, Yu Xia, Yanyan Qi +12 more

The evolutionary dynamics of extrachromosomal DNA in human cancers

Nature Genetics(2022)10.1038/s41588-022-01177-x

N/A

0.795DataRank · unranked

200 citations

John C. Rose, Celine Chen, Yuriy Pichugin, Liangqi Xie, Jun Tang +17 more

Genome-wide CRISPR screens of T cell exhaustion identify chromatin remodeling factors that limit T cell persistence

10.1101/2022.04.20.488974

N/A

0.542DataRank · unranked

36 citations

Winnie Yao, Nghi Ly, Katherine A. Freitas, Yan-Ting Chen, Quanming Shi +14 more

Principles of ecDNA random inheritance drive rapid genome change and therapy resistance in human cancers

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.11.447968

N/A

0.425DataRank · unranked

16 citations

Celine Chen, Yuriy Pichugin, Liangqi Xie, Jun Tang, King L. Hung +14 more

Enhancer activation from transposable elements in extrachromosomal DNA

Nature Cell Biology(2025)10.1038/s41556-025-01788-6

N/A

0.396DataRank · unranked

13 citations

Sedona E. Murphy, Matthew G. Jones, Quanming Shi, Aarohi Bhargava-Shah, Christy Luong +14 more

Spatiotemporal co-dependency between macrophages and exhausted CD8 + T cells in cancer

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.27.461866

N/A

0.269DataRank · unranked

5 citations

Kenneth H. Hu, Alexis J. Combes, Bushra Samad, Tory Harwin, Arja Ray +10 more

A human mutation in STAT3 promotes type 1 diabetes through a defect in CD8+ T cell tolerance

Research Square(2021)10.21203/rs.3.rs-257641/v1

N/A

0.165DataRank · unranked

2 citations

Jeremy Warshauer, Julia A. Belk, Alice Chan, Jiaxi Wang, Alexander R. Gupta +8 more

Inducible lncRNA transgenic mice reveal continual role of HOTAIR in promoting breast cancer metastasis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.21.488980

N/A

0.165DataRank · unranked

2 citations

Liuyi Yang, Karen Tolentino, Yang Zhao, Ulrike M Lizenburger, Quanming Shi +8 more

Systematic discovery of receptor-ligand biology by engineered cell entry and single-cell genomics

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.13.472464

N/A

0.149DataRank · unranked

1 citations

Quanming Shi, Julia A. Belk, Kathryn E. Yost, Kevin R. Parker, Huang Huang +5 more

Genome-wide CRISPR screens of T cell exhaustion identify chromatin remodeling factors that limit T cell persistence

Cancer Cell(2022)10.1016/j.ccell.2022.06.001

N/A

0DataRank · unranked

355 citations

Winnie Yao, Nghi Ly, Katherine A. Freitas, Yanting Chen, Quanming Shi +15 more

Spatiotemporal co-dependency between macrophages and exhausted CD8+ T cells in cancer

Cancer Cell(2022)10.1016/j.ccell.2022.05.004

N/A

0DataRank · unranked

339 citations

Kenneth H. Hu, Alexis J. Combes, Bushra Samad, Tory Harwin, Arja Ray +10 more

Concerted localization-resets precede YAP-dependent transcription

Nature Communications(2020)10.1038/s41467-020-18368-x

N/A

0DataRank · unranked

88 citations

Rajarshi P. Ghosh, Quanming Shi, Michael P. Reddick, Jan Liphardt, James Franklin

B cell-specific XIST complex enforces X-inactivation and restrains atypical B cells

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.03.425167

N/A

0DataRank · unranked

24 citations

Yanyan Qi, Rui Li, Quanming Shi, Ansuman T. Satpathy, Howard Y. Chang +1 more

Differential usage of transcriptional repressor Zeb2 enhancers distinguishes adult and embryonic hematopoiesis

Immunity(2021)10.1016/j.immuni.2021.04.015

N/A

0DataRank · unranked

29 citations

Stephen T. Ferris, Sun Kyung Kim, Mayank Choudhary, Julia A. Belk, Changxu Fan +18 more

A human mutation in STAT3 promotes type 1 diabetes through a defect in CD8+ T cell tolerance

The Journal of Experimental Medicine(2021)10.1084/jem.20210759

N/A

0DataRank · unranked

56 citations

Julia A. Belk, Alice Chan, Jiaxi Wang, Alexander R. Gupta, Quanming Shi +11 more

Bidirectional epigenetic editing reveals hierarchies in gene regulation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.15.516658

N/A

0DataRank · unranked

2 citations

Quanming Shi, Kevin R. Parker, Howard Y. Chang, Naomi M. Pacalin

Author response: Inducible lncRNA transgenic mice reveal continual role of HOTAIR in promoting breast cancer metastasis

(2022)10.7554/elife.79126.sa2

N/A

0DataRank · unranked

0 citations

Liuyi Yang, Karen Tolentino, Guiping Wang, Yang Zhao, Ulrike Litzenburger +13 more

B cell-specific XIST complex enforces X-inactivation and restrains atypical B cells

Cell(2021)10.1016/j.cell.2021.02.015

N/A

0DataRank · unranked

222 citations

Yanyan Qi, Rui Li, Quanming Shi, Ansuman T. Satpathy, Howard Y. Chang +1 more

Robust fluorescent labeling and tracking of endogenous non-repetitive genomic loci

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.22.671818

N/A

0DataRank · unranked

3 citations

Rajarshi P. Ghosh, Linfeng Yang, Quanming Shi, Minh Khue Nguyen, Isaac B. Hilton +3 more

Genetic elements promote retention of extrachromosomal DNA in cancer cells

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.10.681495

N/A

0DataRank · unranked

1 citations

King L. Hung, Aditi Gnanasekar, Ivy Tsz-Lo Wong, Quanming Shi, Katerina Kraft +11 more

EcDNA hubs drive cooperative intermolecular oncogene expression

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.19.390278

N/A

0DataRank · unranked

15 citations

Kathryn E. Yost, Liangqi Xie, Sihan Wu, Joshua T. Lange, Connor V. Duffy +14 more