Carsten Marr

Also affiliated with Center for Environmental Health, Munich School of Philosophy, Helmholtz Zentrum München, LMU Klinikum, German Cancer Society, Ludwig-Maximilians-Universität München

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 42 papers. Top paper: “An automatic method for robust and fast cell detection in bright field images from high-throughput microscopy”.

An automatic method for robust and fast cell detection in bright field images from high-throughput microscopy

BMC Bioinformatics(2013)10.1186/1471-2105-14-297

N/A

6.7DataRank · unranked

162 citations

Carsten Marr, Michael Schwarzfischer, Philipp S. Hoppe, Oliver Hilsenbeck, Fabian Joachim Theis +1 more

Software tools for single-cell tracking and quantification of cellular and molecular properties

Nature Biotechnology(2016)10.1038/nbt.3626

N/A

6.1DataRank · unranked

176 citations

Michael Schwarzfischer, Stavroula Skylaki, Bernhard Schauberger, Philipp S. Hoppe, Dirk Loeffler +14 more

Network plasticity of pluripotency transcription factors in embryonic stem cells

Nature Cell Biology(2015)10.1038/ncb3237

N/A

4.5DataRank · unranked

141 citations

Carsten Marr, Simon Hastreiter, Justin Feigelman, Michael Schwarzfischer, Philipp S. Hoppe +10 more

Metabolic regulation of pluripotency and germ cell fate through α‐ketoglutarate

The EMBO Journal(2018)10.15252/embj.201899518

N/A

3.2DataRank · unranked

108 citations

Wolfram H. Gruhn, Ricardo Ramnarine, Edward S. Allgeyer, Florian Buettner, Carsten Marr +7 more

miTALOS: Analyzing the tissue-specific regulation of signaling pathways by human and mouse microRNAs

RNA(2011)10.1261/rna.2474511

N/A

2.9DataRank · unranked

61 citations

Martin Preusse, Carsten Marr, Fabian Joachim Theis, Andreas Kowarsch

fastER: a user-friendly tool for ultrafast and robust cell segmentation in large-scale microscopy

Bioinformatics(2017)10.1093/bioinformatics/btx107

N/A

2.8DataRank · unranked

79 citations

Michael Schwarzfischer, Dirk Loeffler, Sotiris Dimopoulos, Simon Hastreiter, Carsten Marr +2 more

Stability and Multiattractor Dynamics of a Toggle Switch Based on a Two-Stage Model of Stochastic Gene Expression

Biophysical Journal(2012)10.1016/j.bpj.2011.11.4000

N/A

2.4DataRank · unranked

74 citations

Fabian Joachim Theis, Carsten Marr, Michael Strasser

Opposing effects of allogrooming on disease transmission in ant societies

Philosophical Transactions of the Royal Society B: Biological Sciences(2015)10.1098/rstb.2014.0108

N/A

1.8DataRank · unranked

59 citations

Line V. Ugelvig, Carsten Marr, Sylvia Cremer, Fabian Joachim Theis

Increasing Neural Stem Cell Division Asymmetry and Quiescence Are Predicted to Contribute to the Age-Related Decline in Neurogenesis

Cell Reports(2018)10.1016/j.celrep.2018.11.088

N/A

1.6DataRank · unranked

50 citations

Filippo Calzolari, Christiane Fuchs, Fabian Joachim Theis, Jovica Ninkovic, Carsten Marr +2 more

Analysis of Cell Lineage Trees by Exact Bayesian Inference Identifies Negative Autoregulation of Nanog in Mouse Embryonic Stem Cells

Cell Systems(2016)10.1016/j.cels.2016.11.001

N/A

1.3DataRank · unranked

34 citations

Stefan Ganscha, Simon Hastreiter, Michael Schwarzfischer, Adam Filipczyk, Oliver Hilsenbeck +4 more

destiny : diffusion maps for large-scale single-cell data in R

Bioinformatics(2015)10.1093/bioinformatics/btv715

N/A

0.981DataRank · unranked

689 citations

Laleh Haghverdi, Maren Büttner, Fabian Joachim Theis, Carsten Marr, Florian Buettner +1 more

A BaSiC tool for background and shading correction of optical microscopy images

Nature Communications(2017)10.1038/ncomms14836

N/A

0.898DataRank · unranked

396 citations

Kurt Thorn, Oliver Hilsenbeck, Lichao Wang, Fabian Joachim Theis, Carsten Marr +3 more

SimiRa: A tool to identify coregulation between microRNAs and RNA-binding proteins

RNA Biology(2015)10.1080/15476286.2015.1068496

N/A

0.859DataRank · unranked

15 citations

Carsten Marr, Sita Saunders, Daniel Maticzka, Heiko Lickert, Rolf Backofen +3 more

Multi‐scale modeling of GMP differentiation based on single‐cell genealogies

The FEBS Journal(2012)10.1111/j.1742-4658.2012.08664.x

N/A

0.854DataRank · unranked

21 citations

Michael Strasser, Michael Schwarzfischer, Oliver Hilsenbeck, Fabian Joachim Theis, Carsten Marr

Social Transfer of Pathogenic Fungus Promotes Active Immunisation in Ant Colonies

PLoS Biology(2012)10.1371/journal.pbio.1001300

N/A

0.834DataRank · unranked

258 citations

Meghan L. Vyleta, Fabian Joachim Theis, Miriam Stock, Simon Tragust, Martina Klatt +5 more

Early myeloid lineage choice is not initiated by random PU.1 to GATA1 protein ratios

Nature(2016)10.1038/nature18320

N/A

0.805DataRank · unranked

213 citations

Michael Schwarzfischer, Dirk Loeffler, Konstantinos D. Kokkaliaris, Oliver Hilsenbeck, Nadine Moritz +18 more

Prospective identification of hematopoietic lineage choice by deep learning

Nature Methods(2017)10.1038/nmeth.4182

N/A

0.802DataRank · unranked

209 citations

Florian Buettner, Philipp S. Hoppe, Max Endele, Manuel Kroiss, Michael Strasser +8 more

Explainable machine learning for profiling the immunological synapse and functional characterization of therapeutic antibodies

Nature Communications(2023)10.1038/s41467-023-43429-2

N/A

0.689DataRank · unranked

21 citations

Katharina Essig, Sylvia Herter, Marina Bacac, Fabian Joachim Theis, Elke Glasmacher +4 more

Automatic identification of relevant genes from low-dimensional embeddings of single-cell RNA-seq data

Bioinformatics(2020)10.1093/bioinformatics/btaa198

N/A

0.667DataRank · unranked

14 citations

David S. Fischer, Fabian Joachim Theis, Antonio Scialdone, Carsten Marr, Philipp Angerer

Zebrafish reward mutants reveal novel transcripts mediating the behavioral effects of amphetamine

Genome Biology(2009)10.1186/gb-2009-10-7-r81

N/A

0.639DataRank · unranked

70 citations

William HJ Norton, Dietrich Trümbach, Annemarie H. Meijer, Jovica Ninkovic, Stefanie Topp +10 more

Approximate Bayesian Computation for Stochastic Single-Cell Time-Lapse Data Using Multivariate Test Statistics

Lecture Notes in Computer Science(2015)10.1007/978-3-319-23401-4_6

N/A

0.599DataRank · unranked

10 citations

Carsten Marr, Fabian Joachim Theis, Christiane Fuchs, Carolin Loos

Patterns of Subnet Usage Reveal Distinct Scales of Regulation in the Transcriptional Regulatory Network of Escherichia coli

PLoS Computational Biology(2010)10.1371/journal.pcbi.1000836

N/A

0.595DataRank · unranked

15 citations

Fabian Joachim Theis, Larry S. Liebovitch, Marc-Thorsten Hütt, Marc‐Thorsten Hütt, Carsten Marr

Biologically meaningful update rules increase the critical connectivity of generalized Kauffman networks

Journal of Theoretical Biology(2010)10.1016/j.jtbi.2010.07.007

N/A

0.556DataRank · unranked

9 citations

Carsten Marr, Fabian Joachim Theis, Dominik M. Wittmann

A sparse deep learning approach for automatic segmentation of human vasculature in multispectral optoacoustic tomography

Photoacoustics(2020)10.1016/j.pacs.2020.100203

N/A

0.515DataRank · unranked

30 citations

Angelos Karlas, Nikolina-Alexia Fasoula, Michael Kallmayer, Hans-Henning Eckstein, Fabian Joachim Theis +5 more

cgCorrect: a method to correct for confounding cell–cell variation due to cell growth in single-cell transcriptomics

Physical Biology(2017)10.1088/1478-3975/aa609a

N/A

0.464DataRank · unranked

21 citations

Florian Buettner, Carsten Marr, Fabian Joachim Theis, Michael Strasser, Thomas Blasi

Tissue-Specific Target Analysis of Disease-Associated MicroRNAs in Human Signaling Pathways

PLoS ONE(2010)10.1371/journal.pone.0011154

N/A

0.442DataRank · unranked

18 citations

Carsten Marr, Daniel Schmidl, Andreas Ruepp, Fabian Joachim Theis, Andreas Kowarsch

Cellular connectomes as arbiters of local circuit models in the cerebral cortex

Nature Communications(2021)10.1038/s41467-021-22856-z

N/A

0.385DataRank · unranked

12 citations

Alessandro Motta, Carsten Marr, Fabian Joachim Theis, Moritz Helmstaedter, Emmanuel Klinger

destiny – diffusion maps for large-scale single-cell data in R

bioRxiv (Cold Spring Harbor Laboratory)(2015)10.1101/023309

N/A

0.360DataRank · unranked

10 citations

Laleh Haghverdi, Maren Büttner, Fabian Joachim Theis, Carsten Marr, Florian Buettner +1 more

Progressive disruption of hematopoietic architecture from clonal hematopoiesis to MDS

iScience(2023)10.1016/j.isci.2023.107328

N/A

0.311DataRank · unranked

5 citations

Lisa Bast, Judith S. Hecker, Jennifer Rivière, Maja Rothenberg-Thurley, Luisa Vogel +10 more

Centroid Clustering of Cellular Lineage Trees

Lecture Notes in Computer Science(2014)10.1007/978-3-319-10265-8_2

N/A

0.260DataRank · unranked

3 citations

Michael Schwarzfischer, Nina Hubig, Claudia Plant, Carsten Marr, Michael A. Rieger +3 more

Inference of spatiotemporal effects on cellular state transitions from time-lapse microscopy

BMC Systems Biology(2015)10.1186/s12918-015-0208-5

N/A

0.259DataRank · unranked

3 citations

Justin Feigelman, Fabian Joachim Theis, Carsten Marr, Michael Strasser

LNA++: Linear Noise Approximation with First and Second Order Sensitivities

Lecture Notes in Computer Science(2018)10.1007/978-3-319-99429-1_19

N/A

0.126DataRank · unranked

1 citations

Daniel Weindl, Fabian Joachim Theis, Carsten Marr, Christiane Fuchs, Justin Feigelman

Anatomic-landmark detection using graphical context modelling

2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI)(2015)10.1109/isbi.2015.7164114

N/A

0.104DataRank · unranked

1 citations

Vasileios Belagiannis, Carsten Marr, Guang-Zhong Yang, Nassir Navab, Fabian Joachim Theis +2 more

scifAI: Explainable machine learning for profiling the immunological synapse and functional characterization of therapeutic antibodies

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.24.513494

N/A

0.104DataRank · unranked

1 citations

Katharina Essig, Nikolaos‐Kosmas Chlis, Sylvia Herter, Marina Bacac, Fabian Joachim Theis +4 more

Automatic identification of relevant genes from low-dimensional embeddings of single cell RNAseq data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.21.000398

N/A

0.104DataRank · unranked

1 citations

David S. Fischer, Fabian Joachim Theis, Antonio Scialdone, Carsten Marr, Philipp Angerer

Exact Bayesian lineage tree-based inference identifies Nanog negative autoregulation in mouse embryonic stem cells

bioRxiv (Cold Spring Harbor Laboratory)(2016)10.1101/053231

N/A

0DataRank · unranked

0 citations

Stefan Ganscha, Simon Hastreiter, Michael Schwarzfischer, Adam Filipczyk, Oliver Hilsenbeck +4 more

Data Driven Computational Modeling of Hematopoiesis in Myelodysplastic Syndromes Unveils Differences in Hematopoietic Stem Cell Kinetics Compared to Age-Matched Healthy Controls

Blood(2018)10.1182/blood-2018-99-115942

N/A

0DataRank · unranked

0 citations

Lisa Bast, Lynette Henkel, Robert A. J. Oostendorp, Carsten Marr, Katharina S. Götze +2 more

cgCorrect: A method to correct for confounding cell-cell variation due to cell growth in single-cell transcriptomics

bioRxiv (Cold Spring Harbor Laboratory)(2016)10.1101/057463

N/A

0DataRank · unranked

0 citations

Florian Buettner, Carsten Marr, Fabian Joachim Theis, Michael Strasser, Thomas Blasi

Combined tumor-directed recruitment and protection from immune suppression enable CAR T cell efficacy in solid tumors

Science Advances(2021)10.1126/sciadv.abi5781

N/A

0DataRank · unranked

103 citations

Mohamed-Reda Benmebarek, Klara Dorman, Arman Öner, Theo Lorenzini, Hannah Obeck +24 more

MitoSegNet: Easy-to-use Deep Learning Segmentation for Analyzing Mitochondrial Morphology

iScience(2020)10.1016/j.isci.2020.101601

N/A

0DataRank · unranked

108 citations

Laura Besora-Casals, S. Rolland, Simon Haeussler, Kritarth Singh, Michael R. Duchen +3 more

Gene Networks with Transcriptional Bursting Recapitulate Rare Transient Coordinated High Expression States in Cancer

Cell Systems(2020)10.1016/j.cels.2020.03.004

N/A

0DataRank · unranked

101 citations

Michael Saint-Antoine, Eric M. Sanford, Benjamin Emert, Abhyudai Singh, Carsten Marr +3 more

scifAI: Explainable machine learning for profiling the immunological synapse and functional characterization of therapeutic antibodies

Research Square(2022)10.21203/rs.3.rs-2190942/v1

N/A

0DataRank · unranked

0 citations

Katharina Essig, Nikolaos Kosmas Chlis, Sylvia Herter, Marina Bacac, Fabian Joachim Theis +4 more