Taekjip Ha

Also affiliated with Johns Hopkins University, Johns Hopkins Medicine

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Patient-Derived Triple-Negative Breast Cancer Organoids Provide Robust Model Systems That Recapitulate Tumor Intrinsic Characteristics

UNC Libraries(2024)10.17615/m6mq-tz16

Top 100%

0DataRank

Top 100%0 citations

W. Richard McCombie, Jonathan Preall, G. Arun, Melissa Kramer, Karen Kostroff +13 more

Papers

Driven by 120 papers — median percentile 0. Top paper: “Probing the interaction between two single molecules: fluorescence resonance energy transfer between a single donor and a single acceptor.”.

Probing the interaction between two single molecules: fluorescence resonance energy transfer between a single donor and a single acceptor.

Proceedings of the National Academy of Sciences(1996)10.1073/pnas.93.13.6264

N/A

1.1DataRank · unranked

1259 citations

T Enderle, D F Ogletree, D. S. Chemla, P R Selvin, Taekjip Ha +4 more

Asymmetric Unwrapping of Nucleosomes under Tension Directed by DNA Local Flexibility

Cell(2015)10.1016/j.cell.2015.02.001

N/A

0.878DataRank · unranked

347 citations

Qiucen Zhang, Ruobo Zhou, Jaya G. Yodh, Taekjip Ha, Thuy T. M. Ngo

FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices

eLife(2021)10.7554/elife.60416

N/A

0.867DataRank · unranked

323 citations

Anders Barth, Jelle Hendrix, Benjamin Ambrose, Victoria Birkedal, Scott C. Blanchard +41 more

Extreme Bendability of DNA Less than 100 Base Pairs Long Revealed by Single-Molecule Cyclization

Science(2012)10.1126/science.1224139

N/A

0.861DataRank · unranked

310 citations

Taekjip Ha, Reza Vafabakhsh

ATP binding facilitates target search of SWR1 chromatin remodeler by promoting one-dimensional diffusion on DNA

eLife(2022)10.7554/elife.77352

N/A

0.859DataRank · unranked

33 citations

Matthew F. Poyton, Anand Ranjan, Giho Park, Robert K. Louder, Xinyu A. Feng +5 more

Measuring DNA mechanics on the genome scale

Nature(2020)10.1038/s41586-020-03052-3

N/A

0.745DataRank · unranked

143 citations

Dmitriy G. Bobrovnikov, Zan Qureshi, Tunc Kayikcioglu, Thuy T. M. Ngo, Anand Ranjan +10 more

Ligand binding initiates single-molecule integrin conformational activation

Cell(2024)10.1016/j.cell.2024.04.049

N/A

0.628DataRank · unranked

65 citations

Myung Hyun Jo, Jiabin Yan, Taylor Hall, Joon Lee, Uriel López-Sánchez +4 more

Bursting translation on single mRNAs in live cells

Molecular Cell(2023)10.1016/j.molcel.2023.05.019

N/A

0.626DataRank · unranked

64 citations

Jiwoong Kwon, Oliver Valera, James A. Saba, Niladri K. Sinha, Pranav Reddy +7 more

Multicolor single-molecule FRET for DNA and RNA processes

Current Opinion in Structural Biology(2021)10.1016/j.sbi.2021.03.005

N/A

0.601DataRank · unranked

54 citations

Matthew F. Poyton, Taekjip Ha, Xinyu A. Feng

Membrane compression by synaptic vesicle exocytosis triggers ultrafast endocytosis

Nature Communications(2023)10.1038/s41467-023-38595-2

N/A

0.598DataRank · unranked

53 citations

Haoyuan Jing, Sumana Raychaudhuri, Grant F. Kusick, Yuuta Imoto, Shuo Li +9 more

DNA sequence and methylation prescribe the inside-out conformational dynamics and bending energetics of DNA minicircles

Nucleic Acids Research(2021)10.1093/nar/gkab967

N/A

0.571DataRank · unranked

44 citations

Sangwoo Park, Christopher Maffeo, Taekjip Ha, Aleksei Aksimentiev, Jejoong Yoo

Bi-directional nucleosome sliding by the Chd1 chromatin remodeler integrates intrinsic sequence-dependent and ATP-dependent nucleosome positioning

Nucleic Acids Research(2023)10.1093/nar/gkad738

N/A

0.494DataRank · unranked

26 citations

Giovanni B. Brandani, Taekjip Ha, Gregory D. Bowman, Sangwoo Park

Genome-wide analysis of DNA-PK-bound MRN cleavage products supports a sequential model of DSB repair pathway choice

Nature Communications(2023)10.1038/s41467-023-41544-8

N/A

0.489DataRank · unranked

25 citations

Alberto Marín-González, Hannah K. Barnes, Phillip R. Woolley, Taekjip Ha, Tanya T. Paull +1 more

Bright and photostable yellow fluorescent proteins for extended imaging

Nature Communications(2025)10.1038/s41467-025-58223-5

N/A

0.470DataRank · unranked

22 citations

Shujuan Lai, Shuyuan Yang, Shiqun Zhao, Francisco A. Blanco, Anne C. Lyons +13 more

Senescent stroma induces nuclear deformations in cancer cells via the inhibition of RhoA/ROCK/myosin II-based cytoskeletal tension

PNAS Nexus(2022)10.1093/pnasnexus/pgac270

N/A

0.385DataRank · unranked

12 citations

Byoung Choul Kim, Pratik Kamat, Bartholomew Starich, Anshika Agrawal, Derin Tanrioven +7 more

Effects of individual base-pairs on in vivo target search and destruction kinetics of bacterial small RNA

Nature Communications(2021)10.1038/s41467-021-21144-0

N/A

0.373DataRank · unranked

11 citations

Muhammad S. Azam, Tunc Kayikcioglu, Maksym Bobrovskyy, Jichuan Zhang, Xiangqian Ma +7 more

ORCA/LRWD1 Regulates Homologous Recombination at ALT-Telomeres by Modulating Heterochromatin Organization

iScience(2020)10.1016/j.isci.2020.101038

N/A

0.373DataRank · unranked

11 citations

Yo-Chuen Lin, Christophe E. Redon, Qinyu Sun, Deepak Kumar Singh, Yating Wang +9 more

AAA + ATPase Thorase inhibits mTOR signaling through the disassembly of the mTOR complex 1

Nature Communications(2022)10.1038/s41467-022-32365-2

N/A

0.348DataRank · unranked

6 citations

Leire Abalde-Atristain, Mohammed Repon Khan, Jaba Mitra, Mohammad Aasif Dar, Melissa Chang +11 more

Ultrastable and versatile multimeric ensembles of FoxP3 on microsatellites

Molecular Cell(2025)10.1016/j.molcel.2025.03.005

N/A

0.269DataRank · unranked

5 citations

Raquel Merino‐Urteaga, Xi Wang, Wenxiang Zhang, Taekjip Ha, Sun Hur +1 more

Genome-wide analysis of DNA-PK-bound MRN cleavage products supports a sequential model of DSB repair pathway choice

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.07.519501

N/A

0.177DataRank · unranked

2 citations

Alberto Marín-González, Taekjip Ha, Tanya T. Paull, Rajashree A. Deshpande

The START domain potentiates HD-ZIPIII transcriptional activity

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.08.511209

N/A

0.165DataRank · unranked

2 citations

Antje Feller, Vasudha Aggarwal, Courtney E. Dresden, Ashton S. Holub, Taekjip Ha +2 more

Coordinated DNA and Histone Dynamics Drive Accurate Histone H2A.Z Exchange

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.22.465479

N/A

0.165DataRank · unranked

2 citations

Xinyu A. Feng, Anand Ranjan, Qin Lei, Feng Wang, Jasmin Zarb +8 more

Free-energy measuring nanopore device

Physical review. E(2024)10.1103/physreve.109.024404

N/A

0.104DataRank · unranked

1 citations

Jinghang Zhang, Olivia Yang, Taekjip Ha, Momčilo Gavrilov

Dynamin 1xA interacts with Endophilin A1 via its spliced long C-terminus for ultrafast endocytosis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.21.558797

N/A

0.104DataRank · unranked

1 citations

Jing Xue, Lin Luo, Sumana Raychaudhuri, Kie Itoh, Ye Ma +7 more

Catalytic DNA Polymerization Can Be Expedited by Active Product Release**

Angewandte Chemie(2022)10.1002/ange.202114581

N/A

0.104DataRank · unranked

1 citations

Momčilo Gavrilov, Taekjip Ha, Rebecca Schulman, Pepijn G. Moerman

Imaging the time course of DNA damage response at a nonrepetitive endogenous locus

Cell Reports Methods(2025)10.1016/j.crmeth.2025.101219

N/A

0.104DataRank · unranked

1 citations

Wayne Taylor Cottle, Po-Ta Chen, Jiwoong Kwon, Tiantian Shang, Yanbo Wang +6 more

Orc6 at replication fork enables efficient mismatch repair

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.10.443400

N/A

0DataRank · unranked

0 citations

Arindam Chakraborty, Dazhen Liu, Jaba Mitra, Lyudmila K. Kadyrova, Rosaline Y.C. Hsu +7 more

Light activation and deactivation of Cas9 for DNA repair studies

Methods in enzymology on CD-ROM/Methods in enzymology(2021)10.1016/bs.mie.2021.08.007

N/A

0DataRank · unranked

0 citations

Taekjip Ha, Roger S. Zou

Dynamin is primed at endocytic sites for ultrafast endocytosis

Neuron(2022)10.1016/j.neuron.2022.06.010

N/A

0DataRank · unranked

106 citations

Sumana Raychaudhuri, Ye Ma, Pascal Fenske, Eduardo Sandoval, Kie Itoh +17 more

Membrane ruffling is a mechanosensor of extracellular fluid viscosity

Nature Physics(2022)10.1038/s41567-022-01676-y

N/A

0DataRank · unranked

90 citations

Ernest Iu, Keva Li, Mingjiu Wang, Junjie Chen, Nilay Taneja +12 more

Deciphering the mechanical code of the genome and epigenome

Nature Structural & Molecular Biology(2022)10.1038/s41594-022-00877-6

N/A

0DataRank · unranked

65 citations

Dmitriy G. Bobrovnikov, Basilio Cieza, Juan Pablo Arcon, Zan Qureshi, Modesto Orozco +2 more

Massively parallel genomic perturbations with multi-target CRISPR interrogates Cas9 activity and DNA repair at endogenous sites

Nature Cell Biology(2022)10.1038/s41556-022-00975-z

N/A

0DataRank · unranked

51 citations

Alberto Marín-González, Yang Liu, Hans B. Liu, Leo Shen, Rachel Dveirin +4 more

Single-molecule characterization of subtype-specific β1 integrin mechanics

Nature Communications(2022)10.1038/s41467-022-35173-w

N/A

0DataRank · unranked

48 citations

Jing Li, Valentin Jaumouillé, Yuxin Hao, Jessica Coppola, Jiabin Yan +4 more

Engineered helicase replaces thermocycler in DNA amplification while retaining desired PCR characteristics

Nature Communications(2022)10.1038/s41467-022-34076-0

N/A

0DataRank · unranked

35 citations

Joshua Yang, Roger S. Zou, Wen Ma, Chun-Ying Lee, Sonisilpa Mohapatra +5 more

Rtt105 regulates RPA function by configurationally stapling the flexible domains

Nature Communications(2022)10.1038/s41467-022-32860-6

N/A

0DataRank · unranked

17 citations

Jaigeeth Deveryshetty, Rahul Chadda, Jenna R. Mattice, Nilisha Pokhrel, Vikas Kaushik +11 more

Engineering Functional Membrane–Membrane Interfaces by InterSpy

Small(2022)10.1002/smll.202202104

N/A

0DataRank · unranked

12 citations

Chintan Patel, Sonisilpa Mohapatra, Sungwon Hwang, Tunc Kayikcioglu, Yashar Bashirzadeh +3 more

Achieving single nucleotide sensitivity in direct hybridization genome imaging

Nature Communications(2022)10.1038/s41467-022-35476-y

N/A

0DataRank · unranked

9 citations

Wayne Taylor Cottle, Haobo Wang, Momčilo Gavrilov, Roger S. Zou, Minh‐Tam Pham +4 more

Improving the specificity of nucleic acid detection with endonuclease-actuated degradation

Communications Biology(2022)10.1038/s42003-022-03242-x

N/A

0DataRank · unranked

7 citations

Momčilo Gavrilov, Yang Liu, Dominique Rasoloson, Madison Conte, Justin Hardick +7 more

Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.03.502619

N/A

0DataRank · unranked

14 citations

Christian Gebhardt, Milana Popara, Rebecca Mächtel, Julian Folz, Benjamin Ambrose +42 more

Catalytic DNA Polymerization Can Be Expedited by Active Product Release**

Angewandte Chemie International Edition(2022)10.1002/anie.202114581

N/A

0DataRank · unranked

13 citations

Momčilo Gavrilov, Taekjip Ha, Rebecca Schulman, Pepijn G. Moerman

Improving the sensitivity of in vivo CRISPR off-target detection with DISCOVER-Seq+

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.29.514376

N/A

0DataRank · unranked

4 citations

Yang Liu, Oscar E. Reyes Gaido, Maximilian F. Konig, Brian J. Mog, Leo Shen +4 more

Rtt105 configurationally staples RPA and blocks facilitated exchange and interactions with RPA-interacting proteins

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.05.479199

N/A

0DataRank · unranked

2 citations

Jaigeeth Deveryshetty, Rahul Chadda, Jenna R. Mattice, Nilisha Pokhrel, Vikas Kaushik +11 more

Dependence of Nucleosome Mechanical Stability on DNA Mismatches

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.21.517409

N/A

0DataRank · unranked

2 citations

Bailey Liu, Feng Wang, Aakash Basu, Carl Wu, Taekjip Ha +1 more

Massively parallel genomic perturbations with multi-target CRISPR reveal new insights on Cas9 activity and DNA damage responses at endogenous sites

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.18.476836

N/A

0DataRank · unranked

1 citations

Alberto Marín-González, Yang Liu, Hans B. Liu, Leo Shen, Rachel Dveirin +4 more

Nucleosome sliding by the Chd1 chromatin remodeler relies on the integrity of the DNA duplex

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.19.488687

N/A

0DataRank · unranked

1 citations

Taekjip Ha, Gregory D. Bowman, Sangwoo Park

Achieving single nucleotide sensitivity in direct hybridization genome imaging

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.31.494230

N/A

0DataRank · unranked

1 citations

Wayne Taylor Cottle, Haobo Wang, Momčilo Gavrilov, Roger S. Zou, Scott Bailey +2 more

ATP Binding Facilitates Target Search of SWR1 Chromatin Remodeler by Promoting One-Dimensional Diffusion on DNA

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.24.477290

N/A

0DataRank · unranked

0 citations

Matthew F. Poyton, Anand Ranjan, Giho Park, Robert K. Louder, Thuc Dzu +3 more

Sequence-dependent mechanochemical coupling of helicase translocation and unwinding at single-nucleotide resolution

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.10.479955

N/A

0DataRank · unranked

0 citations

Jonathan M. Craig, Momčilo Gavrilov, Ramreddy Tippana, Ian C. Nova, Jesse R. Huang +11 more

Engineering functional membrane-membrane interface by InterSpy

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.04.487023

N/A

0DataRank · unranked

0 citations

Chintan Patel, Sonisilpa Mohapatra, Sung‐Won Hwang, Tunc Kayikcioglu, Yashar Bashirzadeh +3 more

Membrane compression by synaptic vesicle exocytosis triggers ultrafast endocytosis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.12.495801

N/A

0DataRank · unranked

0 citations

Tyler H Ogunmowo, Sumana Raychaudhuri, Grant F. Kusick, Yuuta Imoto, Shuo Li +6 more

Subtype-specific single β1 integrin mechanics for activation, mechanotransduction and cytoskeleton remodeling

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.08.495291

N/A

0DataRank · unranked

0 citations

Jing Li, Valentin Jaumouillé, Yuxin Hao, Jessica Coppola, Jiabin Yan +4 more

Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins

Nature Methods(2023)10.1038/s41592-023-01807-0

N/A

0DataRank · unranked

162 citations

Christian Gebhardt, Milana Popara, Rebecca Mächtel, Julian Folz, Benjamin Ambrose +42 more

Sniper2L is a high-fidelity Cas9 variant with high activity

Nature Chemical Biology(2023)10.1038/s41589-023-01279-5

N/A

0DataRank · unranked

55 citations

Nahye Kim, Ikenna C. Okafor, Sung-Chul Choi, Seonwoo Min, Joonsun Lee +9 more

Improving the sensitivity of in vivo CRISPR off-target detection with DISCOVER-Seq+

Nature Methods(2023)10.1038/s41592-023-01840-z

N/A

0DataRank · unranked

44 citations

Yang Liu, Oscar E. Reyes Gaido, Maximilian F. Konig, Brian J. Mog, Leo Shen +4 more

Mapping cellular responses to DNA double-strand breaks using CRISPR technologies

Trends in Genetics(2023)10.1016/j.tig.2023.02.015

N/A

0DataRank · unranked

16 citations

Wayne Taylor Cottle, Taekjip Ha, Yang Liu

Dynamic 1D search and processive nucleosome translocations by RSC and ISW2 chromatin remodelers

eLife(2023)10.7554/elife.91433

N/A

0DataRank · unranked

18 citations

Claudia C. Carcamo, Sina Jazani, Zepei Xie, Xinyu A. Feng, Maryam Yamadi +7 more

DNA Damage-Induced, S-Phase Specific Phosphorylation of Orc6 is Critical for the Maintenance of Genome Stability

Molecular and Cellular Biology(2023)10.1080/10985549.2023.2196204

N/A

0DataRank · unranked

9 citations

Dazhen Liu, Arindam Chakraborty, Virgilia Macias, Eileen Brister, Jay Sonalkar +7 more

Linking folding dynamics and function of SAM/SAH riboswitches at the single molecule level

Nucleic Acids Research(2023)10.1093/nar/gkad633

N/A

0DataRank · unranked

8 citations

Lin Huang, Timothy J. Wilson, Laura R. Ganser, David M.J. Lilley, Taekjip Ha +1 more

Bi-allelic TTI1 variants cause an autosomal-recessive neurodevelopmental disorder with microcephaly

The American Journal of Human Genetics(2023)10.1016/j.ajhg.2023.01.006

N/A

0DataRank · unranked

6 citations

Marisol Cortés, Periklis Makrythanasis, Mohnish Suri, Alexander M. Taylor, Jennifer A. Sullivan +44 more

Helicase Activity Modulation with On-Demand Light-Based Conformational Control

Journal of the American Chemical Society(2023)10.1021/jacs.3c05254

N/A

0DataRank · unranked

5 citations

Monika A. Makurath, Clara Wolfe, Yann R. Chemla, Taekjip Ha, Dmitriy G. Bobrovnikov

SIKs Regulate HDAC7 Stabilization and Cytokine Recall in Late-Stage T Cell Effector Differentiation

The Journal of Immunology(2023)10.4049/jimmunol.2300248

N/A

0DataRank · unranked

2 citations

Alberto Marín-González, Chirag H. Patel, Im‐Hong Sun, Jiayu Wen, Robert D. Leone +8 more

Electrostatic encoding of genome organization principles within single native nucleosomes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.08.570828

N/A

0DataRank · unranked

7 citations

Advait Athreya, Gustavo Carrizo, Nils A. Benning, Michelle M. Mitchener, Natarajan V. Bhanu +6 more

Massively parallel single molecule tracking of sequence-dependent DNA mismatch repair in vivo

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.08.523062

N/A

0DataRank · unranked

5 citations

Jasmin Zarb, Sonisilpa Mohapatra, Chang-Ting Lin, James London, Kasper D. Hansen +3 more

GAGA zinc finger transcription factor searches chromatin by 1D-3D facilitated diffusion

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.14.549009

N/A

0DataRank · unranked

3 citations

Maryam Yamadi, Yiben Fu, Kaitlin M. Ness, Celina Liu, Ishtiyaq Ahmed +5 more

A tubulin-binding protein that preferentially binds to GDP-tubulin and promotes GTP exchange

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.09.539990

N/A

0DataRank · unranked

1 citations

Taekjip Ha, Yixian Zheng, Ross T.A. Pedersen, Wesley J. Yon

Dimensional Reduction for Single Molecule Imaging of DNA and Nucleosome Condensation by Polyamines, HP1α and Ki-67

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.04.522433

N/A

0DataRank · unranked

0 citations

Jacob Kæstel‐Hansen, Fahad Rashid, Sangwoo Park, Raquel Merino Urteaga, Ting‐Wei Liao +5 more

Rapid long-distance migration of RPA on single stranded DNA occurs through intersegmental transfer utilizing multivalent interactions

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.09.570606

N/A

0DataRank · unranked

0 citations

Gargi Biswas, Vikas Kaushik, Sahiti Kuppa, Olivia Yang, Chang-Ting Lin +5 more

Single molecule studies of the native hair cell mechanosensory transduction complex

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.11.571162

N/A

0DataRank · unranked

0 citations

Jaba Mitra, Johannes Elferich, April Goehring, Jingpeng Ge, Taekjip Ha +2 more

Determination of single-molecule loading rate during mechanotransduction in cell adhesion

Science(2024)10.1126/science.adk6921

N/A

0DataRank · unranked

72 citations

Paul Meneses, Olivia Yang, Claudia C. Carcamo, Sushil Pangeni, Taekjip Ha +1 more

HLTF disrupts Cas9-DNA post-cleavage complexes to allow DNA break processing

Nature Communications(2024)10.1038/s41467-024-50080-y

N/A

0DataRank · unranked

32 citations

Maria Rosaria Dello Stritto, Yanbo Wang, Jingzhou Hao, Raphael Pavani, Michael Schmitz +13 more

Dynamin 1xA interacts with Endophilin A1 via its spliced long C-terminus for ultrafast endocytosis

The EMBO Journal(2024)10.1038/s44318-024-00145-x

N/A

0DataRank · unranked

22 citations

Jing Xue, Lin Luo, Sumana Raychaudhuri, Kie Itoh, Ye Ma +9 more

Rapid Long-distance Migration of RPA on Single Stranded DNA Occurs Through Intersegmental Transfer Utilizing Multivalent Interactions

Journal of Molecular Biology(2024)10.1016/j.jmb.2024.168491

N/A

0DataRank · unranked

12 citations

Gargi Biswas, Vikas Kaushik, Sahiti Kuppa, Olivia Yang, Chang-Ting Lin +5 more

DNA break induces rapid transcription repression mediated by proteasome-dependent RNAPII removal

Cell Reports(2024)10.1016/j.celrep.2024.114420

N/A

0DataRank · unranked

12 citations

Zhiyuan Huang, Yang Liu, Taekjip Ha, Bin Wu, ShuaiXin He

Dependence of nucleosome mechanical stability on DNA mismatches

eLife(2024)10.7554/elife.95514

N/A

0DataRank · unranked

1 citations

Bailey Liu, Feng Wang, Aakash Basu, Carl Wu, Taekjip Ha +1 more

Probing mechanical selection in diverse eukaryotic genomes through accurate prediction of 3D DNA mechanics

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.22.629997

N/A

0DataRank · unranked

6 citations

Galina Prokopchuk, Andrew R. Popchock, Jingzhou Hao, Ting‐Wei Liao, S. Betty Yan +12 more

Rad52 sorts and stacks Rad51 at the DNA junction to promote homologous recombination

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.07.622519

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0DataRank · unranked

3 citations

Ayush Mistry, Sushil Pangeni, Mohamed Ghoneim, Monika Tokmina‐Lukaszewska, Vikas Kaushik +5 more

A high throughput single molecule platform to study DNA supercoiling effect on protein-DNA interactions

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.24.620099

N/A

0DataRank · unranked

1 citations

Jihee Hwang, Fahad Rashid, James A. London, Richard Fishel, James M. Berger +3 more

The human RAD52 complex undergoes phase separation and facilitates bundling and end-to-end tethering of RAD51 presynaptic filaments

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.09.627445

N/A

0DataRank · unranked

1 citations

Sushil Pangeni, P.A. Dewan, Masayoshi Honda, Ting-Wei Liao, Maria Spies +2 more

Reviewer #2 (Public Review): Dependence of Nucleosome Mechanical Stability on DNA Mismatches

(2024)10.7554/elife.95514.1.sa1

N/A

0DataRank · unranked

0 citations

Bailey Liu, Feng Wang, Aakash Basu, Carl Wu, Taekjip Ha +1 more

Dependence of Nucleosome Mechanical Stability on DNA Mismatches

eLife(2024)10.7554/elife.95514.1

N/A

0DataRank · unranked

0 citations

Bailey Liu, Feng Wang, Aakash Basu, Carl Wu, Taekjip Ha +1 more

Dynamic 1D search and processive nucleosome translocations by RSC and ISW2 chromatin remodelers

eLife(2024)10.7554/elife.91433.3

N/A

0DataRank · unranked

0 citations

Claudia C. Carcamo, Sina Jazani, Zepei Xie, Xinyu A. Feng, Maryam Yamadi +7 more

Reviewer #2 (Public Review): Dependence of Nucleosome Mechanical Stability on DNA Mismatches

(2024)10.7554/elife.95514.2.sa1

N/A

0DataRank · unranked

0 citations

Bailey Liu, Feng Wang, Aakash Basu, Carl Wu, Taekjip Ha +1 more

Patient-Derived Triple-Negative Breast Cancer Organoids Provide Robust Model Systems That Recapitulate Tumor Intrinsic Characteristics

UNC Libraries(2024)10.17615/m6mq-tz16

Top 100%

0DataRank

Top 100%0 citations

W. Richard McCombie, Jonathan Preall, G. Arun, Melissa Kramer, Karen Kostroff +13 more

Connecting single-molecule and superresolution microscopies to cell biology through theoretical modeling

Biophysical Journal(2024)10.1016/j.bpj.2024.11.3308

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0 citations

Taekjip Ha, Jian Liu

DNA supercoiling-mediated G4/R-loop formation tunes transcription by controlling the access of RNA polymerase

Nature Communications(2025)10.1038/s41467-025-58479-x

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21 citations

Chun-Ying Lee, Sumitabha Brahmachari, Shubham Tripathi, Tapas Paul, Huijin Lee +4 more

Cohesin drives chromatin scanning during the RAD51-mediated homology search

Science(2025)10.1126/science.adw1928

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15 citations

Adam T Rybczynski, Namrata M. Nilavar, Daniel Nguyen, Andrew G. Li, Violetta Karwacki-Neisius +6 more

GAGA zinc finger transcription factor searches chromatin by 1D–3D facilitated diffusion

Nature Structural & Molecular Biology(2025)10.1038/s41594-025-01643-0

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13 citations

Maryam Yamadi, Yiben Fu, Kaitlin M. Ness, Celina Liu, Ishtiyaq Ahmed +5 more

Mechanism of Rad51 filament formation by Rad52 and Rad55-Rad57 in homologous recombination

Nature Communications(2025)10.1038/s41467-025-61811-0

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8 citations

Ayush Mistry, Sushil Pangeni, Mohamed Ghoneim, Monika Tokmina‐Lukaszewska, Steven K Gore +9 more

A high-throughput single-molecule platform to study DNA supercoiling effect on protein–DNA interactions

Nucleic Acids Research(2025)10.1093/nar/gkaf581

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6 citations

Fahad Rashid, Jihee Hwang, James A. London, Richard Fishel, James M. Berger +3 more

A tubulin-binding protein that preferentially binds to GDP-tubulin and promotes GTP exchange

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.110401

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2 citations

Taekjip Ha, Yixian Zheng, Ross T.A. Pedersen, Wesley J. Yon

The Plasmodium CSP repeats have elastic properties with a critical role in sporozoite motility

The EMBO Journal(2025)10.1038/s44318-025-00551-9

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2 citations

Sachie Kanatani, Jaba Mitra, Jason Gregory, Natasha Vartak, Ariadne Sinnis-Bourozikas +4 more

Mechanistic insights into direct DNA and RNA strand transfer and dynamic protein exchange of SSB and RPA

Nucleic Acids Research(2025)10.1093/nar/gkaf642

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3 citations

I‐Ren Lee, Sushil Pangeni, Fahad Rashid, Olivia Yang, Edwin Antony +4 more

Measuring double-strand break repair events in mammalian cells with multi-target CRISPR

Methods in enzymology on CD-ROM/Methods in enzymology(2025)10.1016/bs.mie.2025.01.011

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1 citations

Adam T Rybczynski, Roger S. Zou, Taekjip Ha, Alberto Marín-González

Nuclear Localization Signals Enable the Cellular Delivery of an Anti-CRISPR Protein to Control Genome Editing

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.28.685205

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0 citations

Franklin J. Avilés-Vázquez, Taekjip Ha, Amit Choudhary, Ronald T. Raines, Axel O. Vera

Observing Histone H2A.Z Exchange at the Single-Molecule Level

Biophysical Journal(2019)10.1016/j.bpj.2018.11.2624

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0 citations

Ashlee Feng, Anand Ranjan, Qin Lei, Sheng Liu, Carl Wu +2 more

Activated GTPase Movement on SRP RNA Drives Cotranslational Protein Targeting

Biophysical Journal(2013)10.1016/j.bpj.2012.11.2334

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0 citations

Sinan Arslan, David Akopian, Taekjip Ha, Shu-ou Shan, Kuang Shen

ALS/FTLD-Linked Mutations in FUS Glycine Residues Cause Accelerated Gelation and Reduced Interactions with Wild-Type FUS

Molecular Cell(2020)10.1016/j.molcel.2020.10.014

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97 citations

Monika A. Makurath, James Liu, Sophie Skanchy, Christian Lopez, Kevin F. Catalan +7 more

Real-time monitoring of single ZTP riboswitches reveals a complex and kinetically controlled decision landscape

Nature Communications(2020)10.1038/s41467-020-18283-1

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60 citations

Christopher P. Jones, Jaba Mitra, Peter J. Murray, R. Scott Rosenthal, A.R. Ferré-D′Amaré +2 more

Light-controlled twister ribozyme with single-molecule detection resolves RNA function in time and space

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2003425117

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22 citations

Huabing Sun, Boyang Hua, Haozhe Yang, Joseph N. Capilato, R. J. Paul +5 more

Crystal structure and ligand-induced folding of the SAM/SAH riboswitch

Nucleic Acids Research(2020)10.1093/nar/gkaa493

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22 citations

Ting‐Wei Liao, Jia Wang, Taekjip Ha, David M.J. Lilley, Lin Huang

COL2A1 Is a Novel Biomarker of Melanoma Tumor Repopulating Cells

Biomedicines(2020)10.3390/biomedicines8090360

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14 citations

Kshitij Amar, Michael C. Saul, Tasnim Shireen, Vjollca Konjufca, Jian Ma +3 more

Just Took a DNA Test, Turns Out 100% Not That Phase

Molecular Cell(2020)10.1016/j.molcel.2020.03.029

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12 citations

James Shorter, Taekjip Ha, Sua Myong, Aaron D. Gitler

Real-time observation of Cas9 postcatalytic domain motions

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2010650118

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40 citations

John Mallon, Haobo Wang, Digvijay Singh, Myung Hyun Jo, Boyang Hua +3 more

E. coli Rep helicase and RecA recombinase unwind G4 DNA and are important for resistance to G4-stabilizing ligands

Nucleic Acids Research(2020)10.1093/nar/gkaa442

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35 citations

Andrew F. Voter, Rachel R. Cueny, Momčilo Gavrilov, Taekjip Ha, James L. Keck +2 more

Stochastic Analysis Demonstrates the Dual Role of Hfq in Chaperoning E. coli Sugar Shock Response

Frontiers in Molecular Biosciences(2020)10.3389/fmolb.2020.593826

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4 citations

Troy A. Brier, Anustup Poddar, Muhammad S. Azam, Carin K. Vanderpool, Taekjip Ha +2 more

Measuring DNA mechanics on the genome scale

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.17.255042

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12 citations

Dmitriy G. Bobrovnikov, Zan Qureshi, Tunc Kayikcioglu, Thuy T. M. Ngo, Anand Ranjan +10 more

Deciphering the mechanical code of genome and epigenome

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.22.262352

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11 citations

Dmitriy G. Bobrovnikov, Basilio Cieza, Zan Qureshi, Taekjip Ha, Aakash Basu

Stochastic Analysis Demonstrates the Dual Role of Hfq in Chaperoning E. coli Sugar Shock Response

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.30.178566

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0 citations

Troy A. Brier, Anustup Poddar, Muhammad S. Azam, Carin K. Vanderpool, Taekjip Ha +2 more

Effects of individual base-pairs on in vivo target search and destruction kinetics of small RNA

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.24.215095

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0 citations

Muhammad S. Azam, Tunc Kayikcioglu, Maksym Bobrovskyy, Jichuan Zhang, Xiangqian Ma +7 more

Mechanical stress determines the configuration of TGFβ activation in articular cartilage

Nature Communications(2021)10.1038/s41467-021-21948-0

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182 citations

Qiaoyue Guo, Yusheng Li, Chuanlong Wu, Shouan Zhu, Ruomei Wang +10 more

Hippocampal AMPA receptor assemblies and mechanism of allosteric inhibition

Nature(2021)10.1038/s41586-021-03540-0

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113 citations

Prashant Rao, Sarah Clark, Jaba Mitra, Taekjip Ha, Eric Gouaux +1 more

DNA mechanics and its biological impact

Journal of Molecular Biology(2021)10.1016/j.jmb.2021.166861

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62 citations

Dmitriy G. Bobrovnikov, Taekjip Ha, Aakash Basu

Cas9 deactivation with photocleavable guide RNAs

Molecular Cell(2021)10.1016/j.molcel.2021.02.007

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60 citations

Yang Liu, Bin Wu, Taekjip Ha, Roger S. Zou

Genome oligopaint via local denaturation fluorescence in situ hybridization

Molecular Cell(2021)10.1016/j.molcel.2021.02.011

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36 citations

Wayne Taylor Cottle, Haobo Wang, Xinyu A. Feng, John Mallon, Momčilo Gavrilov +3 more

Molecular Nanomechanical Mapping of Histamine-Induced Smooth Muscle Cell Contraction and Shortening

ACS Nano(2021)10.1021/acsnano.1c01782

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26 citations

Byoung Choul Kim, Keewon Sung, Reynold A. Panettieri, Steven S. An, Jian Liu +2 more

A viral genome packaging ring-ATPase is a flexibly coordinated pentamer

Nature Communications(2021)10.1038/s41467-021-26800-z

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19 citations

Digvijay Singh, Suoang Lu, Vishal I. Kottadiel, Reza Vafabakhsh, Marthandan Mahalingam +4 more

CRISPR deactivation in mammalian cells using photocleavable guide RNAs

STAR Protocols(2021)10.1016/j.xpro.2021.100909

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3 citations

Yang Liu, Taekjip Ha, Roger S. Zou

The repeat region of the circumsporozoite protein is an elastic linear spring with a functional role in Plasmodium sporozoite motility

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.12.443759

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6 citations

Sachie Kanatani, Jaba Mitra, Jason Gregory, Natasha Vartak, Ariadne Sinnis-Bourozikas +4 more

A viral genome packaging ring-ATPase is a flexibly coordinated pentamer

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.08.434477

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1 citations

Digvijay Singh, Suoang Lu, Vishal I. Kottadiel, Reza Vafabakhsh, Marthandan Mahalingam +4 more

Senescent stroma induces nuclear deformations in cancer cells via the inhibition of RhoA/ROCK/myosin II-based cytoskeletal tension

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.17.468902

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1 citations

Jude M. Philip, Byoung Choul Kim, Teresa Romeo Luperchio, Ángela María Jiménez, Tânia Perestrelo +6 more

Taekjip Ha

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