Ryann M. Perez

Also affiliated with University of Pennsylvania

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 12 papers. Top paper: “Effects of Mutations and Post-Translational Modifications on α-Synuclein In Vitro Aggregation”.

Effects of Mutations and Post-Translational Modifications on α-Synuclein In Vitro Aggregation

Journal of Molecular Biology(2022)10.1016/j.jmb.2022.167859

N/A

0.590DataRank · unranked

50 citations

Yanxin J. Wang, Marie Shimogawa, Ryann M. Perez, Sam Giannakoulias, E. James Petersson +1 more

AggBERT: Best in Class Prediction of Hexapeptide Amyloidogenesis with a Semi-Supervised ProtBERT Model

Journal of Chemical Information and Modeling(2023)10.1021/acs.jcim.3c00817

N/A

0DataRank · unranked

15 citations

Xinning Li, Sam Giannakoulias, E. James Petersson, Ryann M. Perez

FRETing about the details: Case studies in the use of a genetically encoded fluorescent amino acid for distance‐dependent energy transfer

Protein Science(2023)10.1002/pro.4633

N/A

0DataRank · unranked

12 citations

Chloe M. Jones, Kyle D. Shaffer, Yarra Venkatesh, Sam Giannakoulias, Ryann M. Perez +9 more

Semi-Synthetic CoA-α-Synuclein Constructs Trap N-Terminal Acetyltransferase NatB for Binding Mechanism Studies

Journal of the American Chemical Society(2023)10.1021/jacs.3c03887

N/A

0DataRank · unranked

6 citations

Sarah M. Gardner, Kollin Schultz, Ryann M. Perez, Sunbin Deng, Marie Shimogawa +5 more

Semi-synthetic CoA-α-Synuclein Constructs Trap N-terminal Acetyltransferase NatB for Binding Mechanism Studies

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.03.535351

N/A

0DataRank · unranked

1 citations

Sarah M. Gardner, Kollin Schultz, Ryann M. Perez, Sunbin Deng, Marie Shimogawa +5 more

Proteins Need Extra Attention: Improving the Predictive Power of Protein Language Models on Mutational Datasets with Hint Tokens

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.05.570055

N/A

0DataRank · unranked

1 citations

Ryann M. Perez, Sam Giannakoulias, E. James Petersson, Xinning Li

The LexA–RecA* structure reveals a cryptic lock-and-key mechanism for SOS activation

Nature Structural & Molecular Biology(2024)10.1038/s41594-024-01317-3

N/A

0DataRank · unranked

26 citations

Allen Li, Christina M. Hurley, Peter J. Carman, Ruth A. Pumroy, Zachary M. Hostetler +7 more

Accurate Prediction of Protein Tertiary and Quaternary Stability Using Fine-Tuned Protein Language Models and Free Energy Perturbation

International Journal of Molecular Sciences(2025)10.3390/ijms26157125

N/A

0DataRank · unranked

2 citations

Ryann M. Perez, John J. Ferrie, E. James Petersson, Sam Giannakoulias, X.D. Li

Interactions of Neurodegenerative Disease Positron Emission Tomography Imaging Probe Candidates with the C‐Terminus of α‐Synuclein Fibrils

ChemBioChem(2025)10.1002/cbic.202500578

N/A

0DataRank · unranked

2 citations

Ryann M. Perez, Marshall G. Lougee, Vinayak Vishnu Pagar, Hee Jong Kim, Ho Young Kim +4 more

Complementary Structural and Chemical Biology Methods Reveal the Basis for Selective Radioligand Binding to α-Synuclein in MSA Tissue

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.30.662461

N/A

0DataRank · unranked

4 citations

Ryann M. Perez, Dinahlee Saturnino Guarino, Dhruva Dhavala, Joseph K. Baumgardt, Kyle D. Shaffer +5 more

Large Language Models for Education: ChemTAsk -- An Open-Source Paradigm for Automated Q&A in the Graduate Classroom

arXiv (Cornell University)(2025)10.48550/arxiv.2502.00016

N/A

0DataRank · unranked

2 citations

Marie Shimogawa, Chang, Yanan, Hoang Anh T. Phan, Jason G. Marmorstein, Evan S. K. Yanagawa +2 more

Proteins need extra attention: improving the predictive power of protein language models on mutational datasets with hint tokens

NAR Genomics and Bioinformatics(2025)10.1093/nargab/lqaf128

N/A

0DataRank · unranked

0 citations

Ryann M. Perez, Sam Giannakoulias, E. James Petersson, Xinning Li