Katsuhiko Murakami

Also affiliated with Pennsylvania State University, University of Pennsylvania

Biochemistry, Genetics and Molecular BiologyEnvironmental ScienceMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

0.960Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Comprehensive transcription terminator atlas for Bacillus subtilis

Nature Microbiology(2022)10.1038/s41564-022-01240-7

Top 21%

0.960DataRank

Top 21%40 citations

Rishi K. Vishwakarma, Helen Yakhnin, Katsuhiko Murakami, Mikhail Kashlev, Paul Babitzke +1 more

Papers

Driven by 20 papers — median percentile 79. Top paper: “Comprehensive transcription terminator atlas for Bacillus subtilis”.

Comprehensive transcription terminator atlas for Bacillus subtilis

Nature Microbiology(2022)10.1038/s41564-022-01240-7

Top 21%

0.960DataRank

Top 21%40 citations

Rishi K. Vishwakarma, Helen Yakhnin, Katsuhiko Murakami, Mikhail Kashlev, Paul Babitzke +1 more

Identification of SARS-CoV-2 inhibitors targeting Mpro and PLpro using in-cell-protease assay

Communications Biology(2022)10.1038/s42003-022-03090-9

N/A

0.812DataRank · unranked

223 citations

M. Narwal, Sydney A. Majowicz, Carmine Varricchio, Shay A. Toner, Carlo Ballatore +4 more

Cryo-EM structure of apo-form human DNA polymerase δ elucidates its minimal DNA synthesis activity without PCNA

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.108342

N/A

0.177DataRank · unranked

2 citations

Mark Hedglin, Katsuhiko Murakami, Yeonoh Shin

Cryo-EM study and in vivo chemical mapping of the Methanosarcina acetivorans ribosome and its dimerization via a repurposed enzyme and translation factor

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.110686

N/A

0.175DataRank · unranked

2 citations

Anwesha Ghosh, James G. Ferry, Jean‐Paul Armache, Philip C. Bevilacqua, Katsuhiko Murakami +1 more

Mycobacterial HelD is a nucleic acids-clearing factor for RNA polymerase

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.20.211821

N/A

0.165DataRank · unranked

2 citations

T. Kovaĺ, Petra Sudzinová, Jiří Pospíšil, Barbora Brezovská, Jarmila Hnilicová +15 more

The mechanism of the nucleo-sugar selection by multi-subunit RNA polymerases

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.30.179606

N/A

0.104DataRank · unranked

1 citations

Yeonoh Shin, Eeva Vieras, Pasi Virta, Mikko Metsä‐Ketelä, Katsuhiko Murakami +2 more

Watching the bacterial RNA polymerase transcription reaction by time-dependent soak-trigger-freeze X-ray crystallography

The Enzymes(2021)10.1016/bs.enz.2021.06.009

N/A

0DataRank · unranked

2 citations

Katsuhiko Murakami, Yeonoh Shin

Structural basis of RNA polymerase recycling by the Swi2/Snf2 ATPase RapA in Escherichia coli

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.05.442812

N/A

0DataRank · unranked

4 citations

Vadim Molodtsov, Andrew Renda, Katsuhiko Murakami, M. Zuhaib Qayyum

Deciphering the role of unique bacterial transcription-associated factor HelD

Acta Crystallographica Section A Foundations and Advances(2021)10.1107/s0108767321093934

N/A

0DataRank · unranked

0 citations

Tomáš Kouba, Petra Sudzinová, Jiří Pospíšil, Barbora Brezovská, Jarmila Hnilicová +15 more

Structural basis of ribosomal RNA transcription regulation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.05.136721

N/A

0DataRank · unranked

7 citations

M. Zuhaib Qayyum, Danil Pupov, Daria Esyunina, Andrey Kulbachinskiy, Katsuhiko Murakami +1 more

Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity

Nature Communications(2022)10.1038/s41467-022-32079-5

N/A

0DataRank · unranked

69 citations

Yeonoh Shin, Aleksei Agapov, Anna Olina, Ekaterina Kropocheva, Sergei Ryazansky +5 more

Direct binding of TFEα opens DNA binding cleft of RNA polymerase

Nature Communications(2020)10.1038/s41467-020-19998-x

N/A

0DataRank · unranked

13 citations

Jaekyung Hyun, Jeong Seok Cha, Hoyoung Kim, Michael S. Bartlett, Hyun‐Soo Cho +2 more

SARS-CoV-2 polyprotein substrate regulates the stepwise Mpro cleavage reaction

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.09.507133

N/A

0DataRank · unranked

6 citations

Jean‐Paul Armache, Thomas J. Edwards, Katsuhiko Murakami, M. Narwal

SARS-CoV-2 polyprotein substrate regulates the stepwise Mpro cleavage reaction

Journal of Biological Chemistry(2023)10.1016/j.jbc.2023.104697

N/A

0DataRank · unranked

34 citations

Jean‐Paul Armache, Thomas J. Edwards, Katsuhiko Murakami, M. Narwal

Structure and function of the Si3 insertion integrated into the trigger loop/helix of cyanobacterial RNA polymerase

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2311480121

N/A

0DataRank · unranked

14 citations

Masahiko Imashimizu, Miron Leanca, Rishi K. Vishwakarma, Amber Riaz-Bradley, Yulia Yuzenkova +2 more

Structure and function of the Si3 insertion integrated into the trigger loop/helix of cyanobacterial RNA polymerase

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.11.575193

N/A

0DataRank · unranked

0 citations

Masahiko Imashimizu, Miron Leanca, Rishi K. Vishwakarma, Amber Riaz-Bradley, Yulia Yuzenkova +2 more

Argonaute-HNH filaments triggered by invader DNA confer bacterial immunity

Nature Communications(2025)10.1038/s41467-025-66189-7

N/A

0DataRank · unranked

4 citations

M. Narwal, Lidiya Lisitskaya, Andrey Moiseenko, Olga S. Sokolova, Nikolai N. Sluchanko +3 more

Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase

Nucleic Acids Research(2020)10.1093/nar/gkz1221

N/A

0DataRank · unranked

15 citations

Mark Hedglin, Katsuhiko Murakami, Yeonoh Shin

Structural basis of RNA polymerase recycling by the Swi2/Snf2 family of ATPase RapA in Escherichia coli

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.101404

N/A

0DataRank · unranked

23 citations

Vadim Molodtsov, Andrew Renda, Katsuhiko Murakami, M. Zuhaib Qayyum

The mechanism of the nucleo-sugar selection by multi-subunit RNA polymerases

Nature Communications(2021)10.1038/s41467-021-21005-w

N/A

0DataRank · unranked

17 citations

Yeonoh Shin, Eeva Vieras, Pasi Virta, Mikko Metsä‐Ketelä, Katsuhiko Murakami +2 more

Katsuhiko Murakami

Indexed papers

Top data-sharing exemplar

Papers