D. Branch Moody

Immunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 56 papers. Top paper: “ER stress in antigen‐presenting cells promotes NKT cell activation through endogenous neutral lipids”.

ER stress in antigen‐presenting cells promotes NKT cell activation through endogenous neutral lipids

EMBO Reports(2020)10.15252/embr.201948927

N/A

1.2DataRank · unranked

31 citations

Eveline Verheugen, Koen Venken, Djoere Gaublomme, Margaux Maelegheer, Eva Cloots +7 more

Adipocyte associated glucocorticoid signaling regulates normal fibroblast function which is lost in inflammatory arthritis

Nature Communications(2024)10.1038/s41467-024-52586-x

N/A

1.1DataRank · unranked

18 citations

Tan‐Yun Cheng, Ilya Korsunsky, Gerald F. Watts, Shani T. Gal-Oz, William V. Trim +94 more

Efficient and precise single-cell reference atlas mapping with Symphony

Nature Communications(2021)10.1038/s41467-021-25957-x

N/A

0.832DataRank · unranked

256 citations

Aparna Nathan, Kathryn Weinand, Fan Zhang, Nghia Millard, Laurie Rumker +4 more

Multimodally profiling memory T cells from a tuberculosis cohort identifies cell state associations with demographics, environment and disease

Nature Immunology(2021)10.1038/s41590-021-00933-1

N/A

0.714DataRank · unranked

116 citations

Jessica I. Beynor, Yuriy Baglaenko, Sara Suliman, Kazuyoshi Ishigaki, Samira Asgari +14 more

Human γδ T cells recognize CD1b by two distinct mechanisms

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2010545117

N/A

0.633DataRank · unranked

67 citations

Tonatiuh A. Ocampo, Adam Shahine, Benjamin S. Gully, Pierre Vantourout, Adrian Hayday +4 more

Protein kinases PknA and PknB independently and coordinately regulate essential Mycobacterium tuberculosis physiologies and antimicrobial susceptibility

PLoS Pathogens(2020)10.1371/journal.ppat.1008452

N/A

0.624DataRank · unranked

63 citations

John Platig, Tan‐Yun Cheng, Saima Ahmed, Yara Skaf, Lakshmi‐Prasad Potluri +5 more

Paired analysis of host and pathogen genomes identifies determinants of human tuberculosis

Nature Communications(2024)10.1038/s41467-024-54741-w

N/A

0.578DataRank · unranked

21 citations

Chuan‐Chin Huang, Nicole C. Howard, Xin Wang, Qingyun Liu, Xinyi Li +14 more

CD1a selectively captures endogenous cellular lipids that broadly block T cell response

The Journal of Experimental Medicine(2021)10.1084/jem.20202699

N/A

0.578DataRank · unranked

46 citations

Marcin Wegrecki, Tan‐Yun Cheng, Yi‐Ling Chen, Natacha Veerapen, Jérôme Le Nours +13 more

Human skin is colonized by T cells that recognize CD1a independently of lipid

Journal of Clinical Investigation(2021)10.1172/jci140706

N/A

0.557DataRank · unranked

40 citations

Tan‐Yun Cheng, Marcin Wegrecki, Jérôme Le Nours, Dennis P. Orgill, Bohdan Pomahač +10 more

Efficient and precise single-cell reference atlas mapping with Symphony

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.18.389189

N/A

0.520DataRank · unranked

31 citations

Aparna Nathan, Fan Zhang, Nghia Millard, Laurie Rumker, D. Branch Moody +3 more

Peripheral Blood Mucosal-Associated Invariant T Cells in Tuberculosis Patients and Healthy Mycobacterium tuberculosis-Exposed Controls

The Journal of Infectious Diseases(2020)10.1093/infdis/jiaa173

N/A

0.494DataRank · unranked

26 citations

Anele Gela, Simon C. Mendelsohn, Sarah K. Iwany, Kattya López Tamara, Simbarashe Mabwe +20 more

Higher native Peruvian genetic ancestry proportion is associated with tuberculosis progression risk

Cell Genomics(2022)10.1016/j.xgen.2022.100151

N/A

0.470DataRank · unranked

22 citations

Yang Luo, Chuan-Chin Huang, Zibiao Zhang, Róger Calderón, Judith Jiménez +9 more

Multimodal memory T cell profiling identifies a reduction in a polyfunctional Th17 state associated with tuberculosis progression

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.23.057828

N/A

0.391DataRank · unranked

7 citations

Jessica I. Beynor, Yuriy Baglaenko, Sara Suliman, Kazuyoshi Ishigaki, Samira Asgari +12 more

Direct recognition of an intact foreign protein by an αβ T cell receptor

Nature Communications(2024)10.1038/s41467-024-51897-3

N/A

0.368DataRank · unranked

8 citations

Benjamin S. Gully, Claerwen M. Jones, Łukasz Kedzierski, Sachith D. Gunasinghe, Michael T. Rice +12 more

Modeling memory T cell states at single-cell resolution identifies in vivo state-dependence of eQTLs influencing disease

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.29.454316

N/A

0.269DataRank · unranked

5 citations

Samira Asgari, Kazuyoshi Ishigaki, Tiffany Amariuta, Yang Luo, Jessica I. Beynor +8 more

Detergent-induced quantitatively limited formation of diacyl phosphatidylinositol dimannoside in Mycobacterium smegmatis

Journal of Lipid Research(2024)10.1016/j.jlr.2024.100533

N/A

0.241DataRank · unranked

4 citations

Tan‐Yun Cheng, Jacques Prandi, Ian L. Sparks, D. Branch Moody, Yasu S Morita +1 more

αβ T-cell receptor recognition of self-phosphatidylinositol presented by CD1b

Journal of Biological Chemistry(2022)10.1016/j.jbc.2022.102849

N/A

0.208DataRank · unranked

3 citations

Ildiko Van Rhijn, D. Branch Moody, Jamie Rossjohn, Adam Shahine, Rachel Farquhar

Higher Native Peruvian ancestry proportion is associated with tuberculosis progression risk

medRxiv(2020)10.1101/2020.09.09.20191437

N/A

0.104DataRank · unranked

1 citations

Yang Luo, Kamil Slowikowski, Chuan-Chin Huang, Róger Calderón, Judith Jiménez +9 more

Molecular basis for presentation of N-myristoylated peptides by the chicken YF1∗7.1 molecule

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.110253

N/A

0.104DataRank · unranked

1 citations

Tan‐Yun Cheng, Carl J. H. Wang, Thinh-Phat Cao, Raghavendra Sashi Krishna Nagampalli, Komagal Kannan Sivaraman +5 more

Bacterial strain-dependent dissociation of cell recruitment and cell-to-cell spread in early M. tuberculosis infection

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.10.491435

N/A

0DataRank · unranked

0 citations

Ludovic Desvignes, Tawania Fergus, Amber Cornelius, Tan‐Yun Cheng, D. Branch Moody +2 more

Genetic and lipidomic identification of tuberculostearic acid as a controller of mycobacterial membrane compartmentalization

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.17.504266

N/A

0DataRank · unranked

0 citations

Takehiro Kado, Jacob A. Mayfield, David C. Young, Annie D. Huang, Daisuke Motooka +5 more

CD1 lipidomes reveal lipid-binding motifs and size-based antigen-display mechanisms

Cell(2023)10.1016/j.cell.2023.08.022

N/A

0DataRank · unranked

46 citations

Adam Shahine, Tan‐Yun Cheng, Yi‐Ling Chen, Soo Weei Ng, Gautham R. Balaji +11 more

Biotin-dependent cell envelope remodelling is required for Mycobacterium abscessus survival in lung infection

Nature Microbiology(2023)10.1038/s41564-022-01307-5

N/A

0DataRank · unranked

30 citations

Kerry McGowen, Qiang Liu, Chidiebere Akusobi, David C. Young, Jacob A. Mayfield +7 more

Tuberculostearic Acid Controls Mycobacterial Membrane Compartmentalization

mBio(2023)10.1128/mbio.03396-22

N/A

0DataRank · unranked

17 citations

Takehiro Kado, Jacob A. Mayfield, David C. Young, Annie D. Huang, Daisuke Motooka +5 more

Human Skin T Cells Express Conserved T-Cell Receptors that Cross-React with Staphylococcal Superantigens and CD1a

Journal of Investigative Dermatology(2023)10.1016/j.jid.2023.09.284

N/A

0DataRank · unranked

8 citations

Jessica E. Teague, Sezin Eligul, Wellington C. Arkins, D. Branch Moody, Rachael A. Clark +2 more

CD1 displays its own negative regulators

Current Opinion in Immunology(2023)10.1016/j.coi.2023.102339

N/A

0DataRank · unranked

8 citations

Ildiko Van Rhijn, Jamie Rossjohn, D. Branch Moody, Adam Shahine

CD1a and bound lipids drive T‐cell responses in human skin disease

European Journal of Immunology(2023)10.1002/eji.202250333

N/A

0DataRank · unranked

5 citations

Jamie Rossjohn, Rachael A. Clark, D. Branch Moody, Graham S. Ogg

History of tuberculosis disease is associated with genetic regulatory variation in Peruvians

Andalucía Económica(2023)10.1101/2023.06.20.23291558

N/A

0DataRank · unranked

0 citations

Victor E. Nieto-Caballero, Samira Asgari, Kattya Lopez, Sarah K. Iwany, Yang Luo +14 more

Bioorthogonal metabolic labeling of the virulence factor phenolic glycolipid in mycobacteria

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.28.569059

N/A

0DataRank · unranked

0 citations

C.J. Cambier, Tan‐Yun Cheng, Kubra F. Naqvi, Michael U. Shiloh, D. Branch Moody +2 more

Lipidomic scanning of self-lipids identifies headless antigens for natural killer T cells

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2321686121

N/A

0DataRank · unranked

13 citations

T. Praveena, Srinath Govindarajan, Catarina F. Almeida, Daniel G. Pellicci, Wellington C. Arkins +7 more

Bioorthogonal Metabolic Labeling of the Virulence Factor Phenolic Glycolipid in Mycobacteria

ACS Chemical Biology(2024)10.1021/acschembio.3c00724

N/A

0DataRank · unranked

12 citations

C.J. Cambier, Tan‐Yun Cheng, Kubra F. Naqvi, Michael U. Shiloh, D. Branch Moody +2 more

A conserved human CD4+ T cell subset recognizing the mycobacterial adjuvant trehalose monomycolate

Journal of Clinical Investigation(2024)10.1172/jci185443

N/A

0DataRank · unranked

7 citations

Minori Asa, Mika Hirose, Wakana Kusuhara, Nagatoshi Fujiwara, Hiroto Tamashima +17 more

History of tuberculosis disease is associated with genetic regulatory variation in Peruvians

PLoS Genetics(2024)10.1371/journal.pgen.1011313

N/A

0DataRank · unranked

4 citations

Josephine F. Reijneveld, Angel Ruvalcaba, Gabriel Innocenzi, Nalin Abeydeera, Samira Asgari +19 more

Mycobacteria that cause tuberculosis have retained ancestrally acquired genes for the biosynthesis of chemically diverse terpene nucleosides

PLoS Biology(2024)10.1371/journal.pbio.3002813

N/A

0DataRank · unranked

3 citations

Sahadevan Raman, Alexandrea K. Ramnarine, Vivek Mishra, Annie D. Huang, Sandrine Dudoit +13 more

Establishment of CD1b-restricted immunity to lipid antigens in the pulmonary response to Mycobacterium tuberculosis infection

Infection and Immunity(2024)10.1128/iai.00380-24

N/A

0DataRank · unranked

1 citations

Hadley E. Gary, Sarah K. Cooper, David F. Ackart, James E. DiLisio, Randall J. Basaraba +5 more

Paired analysis of host and pathogen genomes identifies determinants of human tuberculosis

UNC Libraries(2024)10.17615/8w3a-kc10

N/A

0DataRank · unranked

0 citations

Soumya Raychaudhuri, Chuan‐Chin Huang, Xin Wang, D. Branch Moody, Róger Calderón +14 more

Antibody-like recognition of a γδ T cell receptor toward a foreign antigen

Structure(2025)10.1016/j.str.2025.07.006

N/A

0DataRank · unranked

2 citations

Hariprasad Venugopal, Michael T. Rice, Sachith D. Gunasinghe, Chhon Ling Sok, Nicholas A. Gherardin +7 more

Mapping unsolved lipidomes accelerates lipid discovery in major bacterial pathogens

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.06.685907

N/A

0DataRank · unranked

0 citations

Aruna R. Menon, Zonghao Lin, Michiel R. L. Vossenberg, Vanisha Munsamy-Govender, David C. Young +12 more

Human T cell response to CD1a and contact dermatitis allergens in botanical extracts and commercial skin care products

Science Immunology(2020)10.1126/sciimmunol.aax5430

N/A

0DataRank · unranked

58 citations

Marcin Wegrecki, Tan‐Yun Cheng, Elvire Anne Bourgeois, Rachel N. Cotton, Jacob A. Mayfield +7 more

CD1b Tetramers Broadly Detect T Cells That Correlate With Mycobacterial Exposure but Not Tuberculosis Disease State

Frontiers in Immunology(2020)10.3389/fimmu.2020.00199

N/A

0DataRank · unranked

32 citations

Sarah K. Iwany, Sara Suliman, Josephine F. Reijneveld, Tonatiuh A. Ocampo, Judith Jiménez +6 more

Total Synthesis of a Mycolic Acid from Mycobacterium tuberculosis

Angewandte Chemie International Edition(2020)10.1002/anie.202000523

N/A

0DataRank · unranked

28 citations

Peter Fodran, Jayaraman Dhineshkumar, Jeffrey Buter, Martin D. Witte, Tonatiuh A. Ocampo +4 more

Periprotein membrane lipidomics and the role of lipids in transporter function in yeast

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.12.903161

N/A

0DataRank · unranked

0 citations

Tan‐Yun Cheng, Hendrik R. Sikkema, Aike Jeucken, D. Branch Moody, Bert Poolman +1 more

Periprotein lipidomes of Saccharomyces cerevisiae provide a flexible environment for conformational changes of membrane proteins

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.31.016170

N/A

0DataRank · unranked

0 citations

Tan‐Yun Cheng, Hendrik R. Sikkema, Aike Jeucken, D. Branch Moody, Bert Poolman +1 more

CD36 family members are TCR-independent ligands for CD1 antigen–presenting molecules

Science Immunology(2021)10.1126/sciimmunol.abg4176

N/A

0DataRank · unranked

26 citations

Samuel J. Redmond, Hamish E. G. McWilliam, Catarina F. Almeida, Katherine H. A. Gourley, Rebecca Seneviratna +12 more

Benzofuran sulfonates and small self-lipid antigens activate type II NKT cells via CD1d

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2104420118

N/A

0DataRank · unranked

19 citations

D. Smith, Tan‐Yun Cheng, Christopher M. Harpur, Elena Batleska, Catriona V. Nguyen-Robertson +13 more

Rational design of a hydrolysis-resistant mycobacterial phosphoglycolipid antigen presented by CD1c to T cells

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.101197

N/A

0DataRank · unranked

13 citations

Laura Marino, Thinh-Phat Cao, Tan‐Yun Cheng, Dennis Dam, Adam Shahine +10 more

Synthetic mycobacterial diacyl trehaloses reveal differential recognition by human T cell receptors and the C-type lectin Mincle

Scientific Reports(2021)10.1038/s41598-021-81474-3

N/A

0DataRank · unranked

12 citations

Mira Holzheimer, David C. Young, Kattya Lopez, Sara Suliman, Judith Jiménez +9 more

Effects of BCG vaccination on donor unrestricted T cells in humans

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.29.441927

N/A

0DataRank · unranked

5 citations

Melissa Murphy, Kate Hadley, Willem A. Hanekom, W. Henry Boom, John L. Johnson +12 more

Dual TCR-alpha expression on MAIT cells as a potential confounder of TCR interpretation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.25.436871

N/A

0DataRank · unranked

1 citations

Lars Kjer‐Nielsen, Sarah K. Iwany, Kattya López Tamara, Liyen Loh, Ludivine Grzelak +12 more

Atypical sideways recognition of CD1a by autoreactive γδ T cell receptors

Nature Communications(2022)10.1038/s41467-022-31443-9

N/A

0DataRank · unranked

42 citations

Tonatiuh A. Ocampo, Sachith D. Gunasinghe, Anouk von Borstel, Shin Yi Tin, Josephine F. Reijneveld +7 more

A periplasmic cinched protein is required for siderophore secretion and virulence of Mycobacterium tuberculosis

Nature Communications(2022)10.1038/s41467-022-29873-6

N/A

0DataRank · unranked

34 citations

James E. Kent, Meredith Whitaker, David C. Young, Dominik Herrmann, Alexander E. Aleshin +8 more

Effects of BCG vaccination on donor unrestricted T cells in two prospective cohort studies

EBioMedicine(2022)10.1016/j.ebiom.2022.103839

N/A

0DataRank · unranked

39 citations

Melissa Murphy, Miguel Rodo, Kate Hadley, Willem A. Hanekom, W. Henry Boom +18 more

Staphylococcal phosphatidylglycerol antigens activate human T cells via CD1a

Nature Immunology(2022)10.1038/s41590-022-01375-z

N/A

0DataRank · unranked

33 citations

Marcin Wegrecki, Tan‐Yun Cheng, Yi‐Ling Chen, B. Sallee, Reka Chakravarthy +20 more

Bacterial Strain–Dependent Dissociation of Cell Recruitment and Cell-to-Cell Spread in Early M. tuberculosis Infection

mBio(2022)10.1128/mbio.01332-22

N/A

0DataRank · unranked

18 citations

Ludovic Desvignes, Tawania Fergus, Amber Cornelius, Tan‐Yun Cheng, D. Branch Moody +2 more

Dual TCR-α Expression on Mucosal-Associated Invariant T Cells as a Potential Confounder of TCR Interpretation

The Journal of Immunology(2022)10.4049/jimmunol.2100275

N/A

0DataRank · unranked

10 citations

Lars Kjer‐Nielsen, Sarah K. Iwany, Kattya López Tamara, Liyen Loh, Ludivine Grzelak +12 more

A FLOT1 host regulatory allele is associated with a recently expanded Mtb clade in patients with tuberculosis

medRxiv(2022)10.1101/2022.02.07.22270622

N/A

0DataRank · unranked

5 citations

Chuan-Chin Huang, Qingyun Liu, Nicole C. Howard, Xinyi Li, Junhao Zhu +10 more