Srivatsan Raman

Also affiliated with Great Lakes Bioenergy Research Center

Biochemistry, Genetics and Molecular BiologyEnvironmental ScienceMaterials ScienceComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 21 papers. Top paper: “Computation-guided optimization of split protein systems”.

Computation-guided optimization of split protein systems

Nature Chemical Biology(2021)10.1038/s41589-020-00729-8

N/A

0.663DataRank · unranked

82 citations

Anthony Meger, Jonathan Boucher, William K. Corcoran, Elizabeth E. Schauer, Alexis N. Prybutok +3 more

Highly multiplexed design of an allosteric transcription factor to sense new ligands

Nature Communications(2024)10.1038/s41467-024-54260-8

N/A

0.653DataRank · unranked

19 citations

Jackie Chen, Justin Acheson, Svetlana Harbaugh, Phil Huss, M Frenkel +8 more

A parameterized two-domain thermodynamic model explains diverse mutational effects on protein allostery

eLife(2023)10.7554/elife.92262

N/A

0.241DataRank · unranked

4 citations

Thomas Gillis, Srivatsan Raman, Qiang Cui, Zhuang Liu

A parametrized two-domain thermodynamic model explains diverse mutational effects on protein allostery

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.06.552196

N/A

0.104DataRank · unranked

1 citations

Thomas Gillis, Srivatsan Raman, Qiang Cui, Zhuang Liu

Epistasis shapes the fitness landscape of an allosteric specificity switch

Nature Communications(2021)10.1038/s41467-021-25826-7

N/A

0DataRank · unranked

36 citations

Nick Hoppe, Robert Smith, C.A. Bingman, Srivatsan Raman, Kyle Nishikawa

Deep mutational scanning and machine learning reveal structural and molecular rules governing allosteric hotspots in homologous proteins

eLife(2022)10.7554/elife.79932

N/A

0DataRank · unranked

53 citations

Zhuang Liu, Qiang Cui, Srivatsan Raman, Megan Leander

High-throughput approaches to understand and engineer bacteriophages

Trends in Biochemical Sciences(2022)10.1016/j.tibs.2022.08.012

N/A

0DataRank · unranked

14 citations

Jackie Chen, Srivatsan Raman, Phil Huss

A parametrized two-domain thermodynamic model explains diverse mutational effects on protein allostery

(2023)10.7554/elife.92262.1

N/A

0DataRank · unranked

1 citations

Thomas Gillis, Srivatsan Raman, Qiang Cui, Zhuang Liu

Reviewer #3 (Public Review): A parametrized two-domain thermodynamic model explains diverse mutational effects on protein allostery

(2023)10.7554/elife.92262.1.sa0

N/A

0DataRank · unranked

0 citations

Thomas Gillis, Srivatsan Raman, Qiang Cui, Zhuang Liu

Reviewer #1 (Public Review): A parametrized two-domain thermodynamic model explains diverse mutational effects on protein allostery

(2023)10.7554/elife.92262.1.sa2

N/A

0DataRank · unranked

0 citations

Thomas Gillis, Srivatsan Raman, Qiang Cui, Zhuang Liu

Rugged fitness landscapes minimize promiscuity in the evolution of transcriptional repressors

Cell Systems(2024)10.1016/j.cels.2024.03.002

N/A

0DataRank · unranked

22 citations

Matthew A. Spence, Mahakaran Sandhu, Dana C. Matthews, Jackie Chen, Colin J. Jackson +2 more

A parameterized two-domain thermodynamic model explains diverse mutational effects on protein allostery

eLife(2024)10.7554/elife.92262.3

N/A

0DataRank · unranked

5 citations

Thomas Gillis, Srivatsan Raman, Qiang Cui, Zhuang Liu

Large-scale discovery of chromatin dysregulation induced by oncofusions and other protein-coding variants

Nature Biotechnology(2024)10.1038/s41587-024-02347-4

N/A

0DataRank · unranked

4 citations

James E. Corban, Margaux L. A. Hujoel, Zachary S. Morris, Srivatsan Raman, M Frenkel

Engineering bacteriophages through deep mining of metagenomic motifs

Science Advances(2025)10.1126/sciadv.adt6432

N/A

0DataRank · unranked

20 citations

Kristopher Kieft, Anthony Meger, Kyle Nishikawa, Karthik Anantharaman, Srivatsan Raman +1 more

Systematic, high-throughput characterization of bacteriophage gene essentiality on diverse hosts

Cell Host & Microbe(2025)10.1016/j.chom.2025.06.018

N/A

0DataRank · unranked

10 citations

Erick D. Nilsen, Chutikarn Chitboonthavisuk, James E. Corban, Matthew Yang, Charlie Y. Mo +2 more

Understanding, inhibiting, and engineering membrane transporters with high-throughput mutational screens

Cell chemical biology(2025)10.1016/j.chembiol.2025.03.003

N/A

0DataRank · unranked

5 citations

Christian B. Macdonald, Srivatsan Raman, Silas T. Miller

Functional Plasticity and Evolutionary Adaptation of Allosteric Regulation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.10.942417

N/A

0DataRank · unranked

2 citations

Yuchen Yuan, Anthony Meger, Qiang Cui, Srivatsan Raman, Megan Leander

Systematic genome-wide mapping of host determinants of bacteriophage infectivity

Cell Systems(2025)10.1016/j.cels.2025.101427

N/A

0DataRank · unranked

0 citations

Cody Martin, Phil Huss, Jason M. Peters, Karthik Anantharaman, Srivatsan Raman +1 more

Epistasis shapes the fitness landscape of an allosteric specificity switch

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.21.348920

N/A

0DataRank · unranked

2 citations

Nick Hoppe, Robert Smith, C.A. Bingman, Srivatsan Raman, Kyle Nishikawa

Mapping the Functional Landscape of the Receptor Binding Domain of T7 Bacteriophage by Deep Mutational Scanning

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.28.225284

N/A

0DataRank · unranked

0 citations

Anthony Meger, Megan Leander, Kyle Nishikawa, Srivatsan Raman, Phil Huss

Mapping the functional landscape of the receptor binding domain of T7 bacteriophage by deep mutational scanning

eLife(2021)10.7554/elife.63775

N/A

0DataRank · unranked

74 citations

Anthony Meger, Megan Leander, Kyle Nishikawa, Srivatsan Raman, Phil Huss