Joel D. Allen

Immunology and MicrobiologyMedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 54 papers. Top paper: “Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM”.

Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM

Nature Communications(2021)10.1038/s41467-021-25087-4

N/A

1.3DataRank · unranked

81 citations

Leigh M. Sewall, Christopher A. Cottrell, Diane G. Carnathan, Luis Jiménez, Julia T. Ngo +27 more

Site-specific glycan analysis of the SARS-CoV-2 spike

Science(2020)10.1126/science.abb9983

N/A

1.1DataRank · unranked

1678 citations

Joel D. Allen, Daniel Wrapp, Jason S. McLellan, Max Crispin, Yasunori Watanabe

Neutralizing Antibody Responses Induced by HIV-1 Envelope Glycoprotein SOSIP Trimers Derived from Elite Neutralizers

Journal of Virology(2020)10.1128/jvi.01214-20

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0.622DataRank · unranked

23 citations

Tom L.G.M. van den Kerkhof, Christopher A. Cottrell, Joel D. Allen, Jonathan L. Torres, Anna‐Janina Behrens +19 more

Development of a high‐sensitivity ELISA detecting IgG, IgA and IgM antibodies to the SARS‐CoV‐2 spike glycoprotein in serum and saliva

Immunology(2021)10.1111/imm.13349

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0.598DataRank · unranked

53 citations

Siân E. Jossi, Marisol Pérez-Toledo, Adrian Shields, Joel D. Allen, Yasunori Watanabe +23 more

Single-component multilayered self-assembling protein nanoparticles presenting glycan-trimmed uncleaved prefusion optimized envelope trimers as HIV-1 vaccine candidates

Nature Communications(2023)10.1038/s41467-023-37742-z

N/A

0.587DataRank · unranked

49 citations

Jennifer Paynter, Aleksandar Antanasijevic, Joel D. Allen, Mor Eldad, Yi-Zong Lee +14 more

Effector function does not contribute to protection from virus challenge by a highly potent HIV broadly neutralizing antibody in nonhuman primates

Science Translational Medicine(2021)10.1126/scitranslmed.abe3349

N/A

0.550DataRank · unranked

38 citations

David Beauparlant, Eva G. Rakasz, Rebecca Nedellec, Nathanaël Hozé, Katherine McKenney +9 more

Neutralizing Antibodies Induced by First-Generation gp41-Stabilized HIV-1 Envelope Trimers and Nanoparticles

mBio(2021)10.1128/mbio.00429-21

N/A

0.416DataRank · unranked

15 citations

Xiaohe Lin, Timothy A. Ngo, Benjamin G. Shapero, Cindy Sou, Joel D. Allen +9 more

Site-specific steric control of SARS-CoV-2 spike glycosylation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.08.433764

N/A

0.416DataRank · unranked

15 citations

Himanshi Chawla, Firdaus Samsudin, Lorena Zuzic, Aishwary T. Shivgan, Yasunori Watanabe +22 more

Enhancing glycan occupancy of soluble HIV-1 envelope trimers to mimic the native viral spike

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.02.184135

N/A

0.396DataRank · unranked

13 citations

Joel D. Allen, Christopher A. Cottrell, Kwinten Sliepen, Gemma E. Seabright, Wen-Hsin Lee +15 more

Immunofocusing and enhancing autologous Tier-2 HIV-1 neutralization by displaying Env trimers on two-component protein nanoparticles

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.30.403543

N/A

0.325DataRank · unranked

6 citations

Aleksandar Antanasijevic, Marlon de Gast, Joel D. Allen, Tom P. L. Bijl, Anila Yasmeen +15 more

Priming antibody responses to the fusion peptide in rhesus macaques

npj Vaccines(2024)10.1038/s41541-024-00918-9

N/A

0.312DataRank · unranked

7 citations

Payal Pratap, Kimberly M. Cirelli, Diane G. Carnathan, Chiamaka A. Enemuo, Aleksandar Antanasijevic +16 more

Networks of HIV-1 envelope glycans maintain antibody epitopes in the face of glycan additions and deletions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.21.959981

N/A

0.165DataRank · unranked

2 citations

Christopher A. Cottrell, Marit J. van Gils, Alessio D’Addabbo, David J. Harvey, Anna‐Janina Behrens +9 more

Immunofocusing and enhancing autologous Tier-2 HIV-1 neutralization by displaying Env trimers on two-component protein nanoparticles

npj Vaccines(2021)10.1038/s41541-021-00285-9

N/A

0DataRank · unranked

51 citations

Aleksandar Antanasijevic, Marlon de Gast, Joel D. Allen, Tom P. L. Bijl, Anila Yasmeen +15 more

A cross-neutralizing antibody between HIV-1 and influenza virus

PLoS Pathogens(2021)10.1371/journal.ppat.1009407

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0DataRank · unranked

40 citations

Yasunori Watanabe, Nicholas C. Wu, Julianna Han, Sonu Kumar, Tossapol Pholcharee +10 more

The Glycan Hole Area of HIV-1 Envelope Trimers Contributes Prominently to the Induction of Autologous Neutralization

Journal of Virology(2021)10.1128/jvi.01552-21

N/A

0DataRank · unranked

24 citations

Christopher A. Cottrell, Pavel Pugach, Rajesh P. Ringe, Alvin X. Han, Joel D. Allen +20 more

Engineering well-expressed, V2-immunofocusing HIV-1 envelope glycoprotein membrane trimers for use in heterologous prime-boost vaccine regimens

PLoS Pathogens(2021)10.1371/journal.ppat.1009807

N/A

0DataRank · unranked

19 citations

Francisco Almanza, Alessio D’Addabbo, E. Duggan, Jinsong Zhang, Kshitij Wagh +12 more

Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.28.428677

N/A

0DataRank · unranked

9 citations

Leigh M. Sewall, Christopher A. Cottrell, Diane G. Carnathan, Luis Jiménez, Julia T. Ngo +27 more

Molecular insights into antibody-mediated protection against the prototypic simian immunodeficiency virus

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.22.473937

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0DataRank · unranked

2 citations

Zachary T. Berndsen, Núria Pedreño-López, Alison Burns, Joel D. Allen, Shawn Barman +26 more

Structure of the hepatitis C virus E1E2 glycoprotein complex

Science(2022)10.1126/science.abn9884

N/A

0DataRank · unranked

89 citations

Kwinten Sliepen, Lisa Eshun-Wilson, Maddy L. Newby, Joel D. Allen, Ian Zon +8 more

High thermostability improves neutralizing antibody responses induced by native-like HIV-1 envelope trimers

npj Vaccines(2022)10.1038/s41541-022-00446-4

N/A

0DataRank · unranked

29 citations

Rebecca A Russell, Edith E. Schermer, Christopher A. Cottrell, Joel D. Allen, Alba Torrents de la Peña +9 more

Fine-mapping the immunodominant antibody epitopes on consensus sequence-based HIV-1 envelope trimer vaccine candidates

npj Vaccines(2022)10.1038/s41541-022-00576-9

N/A

0DataRank · unranked

15 citations

Marlies M. van Haaren, Jelle van Schooten, Mathieu Claireaux, Pauline Maisonnasse, Aleksandar Antanasijevic +25 more

Molecular insights into antibody-mediated protection against the prototypic simian immunodeficiency virus

Nature Communications(2022)10.1038/s41467-022-32783-2

N/A

0DataRank · unranked

10 citations

Zachary T. Berndsen, Núria Pedreño-López, Alison Burns, Joel D. Allen, Shawn Barman +27 more

Single-component multilayered self-assembling protein nanoparticles presenting glycan-trimmed uncleaved prefusion optimized envelope trimers as HIV-1 vaccine candidates

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.01.498503

N/A

0DataRank · unranked

2 citations

Jennifer Paynter, Aleksandar Antanasijevic, Joel D. Allen, Mor Eldad, Yi-Zong Lee +14 more

The diversity of the glycan shield of sarbecoviruses closely related to SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.24.505118

N/A

0DataRank · unranked

1 citations

Dylan P. Ivory, Ge Song, Wanting He, Tazio Capozzola, Peter Yong +4 more

Germline-targeting HIV-1 Env vaccination induces VRC01-class antibodies with rare insertions

Cell Reports Medicine(2023)10.1016/j.xcrm.2023.101003

N/A

0DataRank · unranked

55 citations

Max Medina-Ramírez, Jinsong Zhang, Anita Sarkar, Sonu Kumar, Alex LaBranche +32 more

The diversity of the glycan shield of sarbecoviruses related to SARS-CoV-2

Cell Reports(2023)10.1016/j.celrep.2023.112307

N/A

0DataRank · unranked

32 citations

Dylan P. Ivory, Ge Song, Wanting He, Tazio Capozzola, Peter Yong +4 more

Glycan heterogeneity as a cause of the persistent fraction in HIV-1 neutralization

PLoS Pathogens(2023)10.1371/journal.ppat.1011601

N/A

0DataRank · unranked

10 citations

Philippe Colin, Gabriel Ozorowski, Joel D. Allen, Anila Yasmeen, Gemma E. Seabright +9 more

Triple tandem trimer immunogens for HIV-1 and influenza nucleic acid-based vaccines

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.27.554987

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0DataRank · unranked

3 citations

Edmund G. Wee, Yuejiao Xian, Wen-Hsin Lee, Joel D. Allen, Alba Torrents de la Peña +21 more

Focusing antibody responses to the fusion peptide in rhesus macaques

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.26.545779

N/A

0DataRank · unranked

0 citations

Payal Pratap, Kimberly M. Cirelli, Diane G. Carnathan, Chiamaka A. Enemuo, Aleksandar Antanasijevic +19 more

Germline-targeting HIV vaccination induces neutralizing antibodies to the CD4 binding site

Science Immunology(2024)10.1126/sciimmunol.adk9550

N/A

0DataRank · unranked

40 citations

Max Medina-Ramírez, Shiyu Zhang, Sven Kratochvil, Yuejiao Xian, Ja‐Hyun Koo +42 more

Vaccination induces broadly neutralizing antibody precursors to HIV gp41

Nature Immunology(2024)10.1038/s41590-024-01833-w

N/A

0DataRank · unranked

53 citations

Ivy Phung, Rashmi Ray, A. Irimia, Ming Tian, Olivia Swanson +70 more

Triple tandem trimer immunogens for HIV-1 and influenza nucleic acid-based vaccines

npj Vaccines(2024)10.1038/s41541-024-00862-8

N/A

0DataRank · unranked

13 citations

Edmund G. Wee, Yuejiao Xian, Wen-Hsin Lee, Joel D. Allen, Alba Torrents de la Peña +21 more

Mosaic and mixed HIV-1 glycoprotein nanoparticles elicit antibody responses to broadly neutralizing epitopes

PLoS Pathogens(2024)10.1371/journal.ppat.1012558

N/A

0DataRank · unranked

9 citations

Gius Kerster, Philip J. M. Brouwer, Andy S. Tran, Jonathan L. Torres, Roos A Ettema +23 more

Impact of glycan depletion, glycan debranching and increased glycan charge on HIV-1 neutralization sensitivity and immunogenicity

Glycobiology(2024)10.1093/glycob/cwae063

N/A

0DataRank · unranked

3 citations

Tommy Tong, Emma T Crooks, Keiko Osawa, Jiamin Xu, Alyssa Thomas +4 more

Immunofocusing on the conserved fusion peptide of HIV envelope glycoprotein in rhesus macaques

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.27.625755

N/A

0DataRank · unranked

3 citations

Christopher A. Cottrell, James C. Quinn, Diane G. Carnathan, Daniel Bader, Andy S. Tran +21 more

From sequence to scaffold: Computational design of protein nanoparticle vaccines from AlphaFold2-predicted building blocks

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2409566122

N/A

0DataRank · unranked

8 citations

Naveen Jasti, Annie Dosey, Joel D. Allen, Rebecca A. Gillespie, Jackson McGowan +6 more

The Design and Immunogenicity of an HIV-1 Clade C Pediatric Envelope Glycoprotein Stabilized by Multiple Platforms

Vaccines(2025)10.3390/vaccines13020110

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0DataRank · unranked

5 citations

Iván del Moral-Sánchez, Swarandeep Singh, Maddy L. Newby, Joel D. Allen, Tom P. L. Bijl +9 more

Consistent Induction of Broadly Neutralizing HIV Antibodies by a Novel Two-Step Mechanism Informs Immunogen Design

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.06.680687

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0DataRank · unranked

3 citations

Harry B. Gristick, Hui Li, Edem Gavor, Andrew J. Connell, Edward F. Kreider +52 more

Native-like soluble E1E2 glycoprotein heterodimers on self-assembling protein nanoparticles for hepatitis C virus vaccine design

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.16.654559

N/A

0DataRank · unranked

2 citations

Yi-Zong Lee, Yi-Nan Zhang, Maddy L. Newby, Benjamin M. Janus, Fabrizio G. Gonzalez +13 more

Harnessing mRNA for the expression of monoclonal IgG and IgA in non-human primates

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.09.648023

N/A

0DataRank · unranked

0 citations

Hayden R. Schmidt, Cailin E. Deal, Joel D. Allen, Dawn M. Dudley, Iszac Burton +6 more

Immunofocusing on the conserved fusion peptide of HIV envelope glycoprotein in rhesus macaques

npj Vaccines(2025)10.1038/s41541-025-01252-4

N/A

0DataRank · unranked

0 citations

Christopher A. Cottrell, James C. Quinn, Diane G. Carnathan, Daniel Bader, Andy S. Tran +21 more

From sequence to scaffold: computational design of protein nanoparticle vaccines from AlphaFold2-predicted building blocks

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.20.671178

N/A

0DataRank · unranked

0 citations

Naveen Jasti, Annie Dosey, Joel D. Allen, Rebecca A. Gillespie, Jackson McGowan +6 more

Differential contributions of human oligosaccharyltransferase complexes OST-A and OST-B to HIV-1 envelope glycoprotein glycosylation

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.03.674041

N/A

0DataRank · unranked

0 citations

Ronald Derking, Maddy L. Newby, Ronald Derking, Jonne L. Snitselaar, Yoann Aldon +4 more

Vulnerabilities in coronavirus glycan shields despite extensive glycosylation

Nature Communications(2020)10.1038/s41467-020-16567-0

N/A

0DataRank · unranked

403 citations

Zachary T. Berndsen, Jayna Raghwani, Gemma E. Seabright, Joel D. Allen, Oliver Pybus +6 more

Sensitive Detection of SARS-CoV-2–Specific Antibodies in Dried Blood Spot Samples

Emerging infectious diseases(2020)10.3201/eid2612.203309

N/A

0DataRank · unranked

96 citations

Stephen Taylor, Siân E. Jossi, Marisol Pérez-Toledo, Sian Faustini, Edith Marcial‐Juárez +11 more

Structural and functional evaluation of de novo-designed, two-component nanoparticle carriers for HIV Env trimer immunogens

PLoS Pathogens(2020)10.1371/journal.ppat.1008665

N/A

0DataRank · unranked

77 citations

George Ueda, Philip J. M. Brouwer, Jeffrey Copps, Deli Huang, Joel D. Allen +17 more

Networks of HIV-1 Envelope Glycans Maintain Antibody Epitopes in the Face of Glycan Additions and Deletions

Structure(2020)10.1016/j.str.2020.04.022

N/A

0DataRank · unranked

59 citations

Christopher A. Cottrell, Marit J. van Gils, Alessio D’Addabbo, David J. Harvey, Anna‐Janina Behrens +11 more

Detection of antibodies to the SARS-CoV-2 spike glycoprotein in both serum and saliva enhances detection of infection

medRxiv(2020)10.1101/2020.06.16.20133025

N/A

0DataRank · unranked

76 citations

Siân E. Jossi, Marisol Pérez-Toledo, Adrian Shields, Joel D. Allen, Yasunori Watanabe +23 more

Two-component spike nanoparticle vaccine protects macaques from SARS-CoV-2 infection

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.07.365726

N/A

0DataRank · unranked

16 citations

Mitch Brinkkemper, Pauline Maisonnasse, Nathalie Dereuddre‐Bosquet, Marloes Grobben, Mathieu Claireaux +42 more

Sensitive detection of SARS-CoV-2-specific-antibodies in dried blood spot samples

medRxiv(2020)10.1101/2020.07.01.20144295

N/A

0DataRank · unranked

6 citations

Stephen Taylor, Siân E. Jossi, Marisol Pérez-Toledo, Sian Faustini, Edith Marcial‐Juárez +11 more

Two-component spike nanoparticle vaccine protects macaques from SARS-CoV-2 infection

Cell(2021)10.1016/j.cell.2021.01.035

N/A

0DataRank · unranked

210 citations

Mitch Brinkkemper, Pauline Maisonnasse, Nathalie Dereuddre‐Bosquet, Marloes Grobben, Mathieu Claireaux +42 more

Site-Specific Steric Control of SARS-CoV-2 Spike Glycosylation

Biochemistry(2021)10.1021/acs.biochem.1c00279

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0DataRank · unranked

65 citations

Himanshi Chawla, Firdaus Samsudin, Lorena Zuzic, Aishwary T. Shivgan, Yasunori Watanabe +22 more

Insertion of atypical glycans into the tumor antigen-binding site identifies DLBCLs with distinct origin and behavior

Blood(2021)10.1182/blood.2021012052

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0DataRank · unranked

34 citations

Joel D. Allen, Dean Bryant, Philip Rock, Enrica Antonia Martino, Beatriz Valle‐Argos +17 more

Enhancing glycan occupancy of soluble HIV-1 envelope trimers to mimic the native viral spike

Cell Reports(2021)10.1016/j.celrep.2021.108933

N/A

0DataRank · unranked

66 citations

Joel D. Allen, Christopher A. Cottrell, Kwinten Sliepen, Gemma E. Seabright, Wen-Hsin Lee +20 more