Levi Waldron

The Graduate Center, CUNY

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

13.8Author DataRank

Indexed papers

10in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 10 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Accessible, curated metagenomic data through ExperimentHub

Nature Methods(2017)10.1038/nmeth.4468

Top 2%

7.1DataRank

Top 2%570 citations

Lucas Schiffer, Paolo Manghi, Audrey Renson, Valerie Obenchain, Duy Tin Truong +9 more

Papers

Driven by 44 papers — median percentile 59. Top paper: “Accessible, curated metagenomic data through ExperimentHub”.

Accessible, curated metagenomic data through ExperimentHub

Nature Methods(2017)10.1038/nmeth.4468

Top 2%

7.1DataRank

Top 2%570 citations

Lucas Schiffer, Paolo Manghi, Audrey Renson, Valerie Obenchain, Duy Tin Truong +9 more

Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space

Cell Genomics(2022)10.1016/j.xgen.2021.100085

N/A

3.9DataRank · unranked

132 citations

Anthony Philippakis, Enis Afgan, Eric Banks, Vincent J. Carey, Robert J. Carroll +95 more

Accessible, curated metagenomic data through ExperimentHub

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/103085

Top 10%

2.0DataRank

Top 10%65 citations

Lucas Schiffer, Paolo Manghi, Audrey Renson, Valerie Obenchain, Duy Tin Truong +9 more

HGNChelper: identification and correction of invalid gene symbols for human and mouse

F1000Research(2020)10.12688/f1000research.28033.1

Top 12%

1.7DataRank

Top 12%44 citations

Jasmine Abdelnabi, Ragheed Al-Dulaimi, Ayush Aggarwal, Marcel Ramos, Sean Davis +3 more

Metagenomic biomarker discovery and explanation

Genome Biology(2011)10.1186/gb-2011-12-6-r60

N/A

1.5DataRank · unranked

16383 citations

Jacques Izard, Levi Waldron, Dirk Gevers, Larisa Miropolsky, Wendy S. Garrett +2 more

HGNChelper: identification and correction of invalid gene symbols for human and mouse

F1000Research(2022)10.12688/f1000research.28033.2

N/A

1.3DataRank · unranked

27 citations

Jasmine Abdelnabi, Ragheed Al-Dulaimi, Ayush Aggarwal, Marcel Ramos, Sean Davis +3 more

Multivariable association discovery in population-scale meta-omics studies

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009442

N/A

1.2DataRank · unranked

2502 citations

Ali Rahnavard, Lauren J. McIver, Siyuan Ma, Yancong Zhang, Long H. Nguyen +15 more

Metagenomic microbial community profiling using unique clade-specific marker genes

Nature Methods(2012)10.1038/nmeth.2066

N/A

1.1DataRank · unranked

1891 citations

Levi Waldron, Annalisa Ballarini, Vagheesh Narasimhan, Olivier Jousson, Curtis Huttenhower +2 more

Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer

Nature Medicine(2019)10.1038/s41591-019-0406-6

N/A

1.1DataRank · unranked

1351 citations

Paul Theodor Pyl, Ece Kartal, Konrad Zych, Alireza Kashani, Alessio Milanese +32 more

Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

Nature Medicine(2019)10.1038/s41591-019-0405-7

N/A

1.0DataRank · unranked

1030 citations

Paolo Manghi, Francesco Asnicar, Edoardo Pasolli, Federica Armanini, Moreno Zolfo +36 more

BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures

Nature Biotechnology(2023)10.1038/s41587-023-01872-y

Top 22%

0.934DataRank

Top 22%19 citations

Chloe Mirzayi, Fatima Zohra, Rimsha Azhar, Shaimaa Elsafoury, C. M. Grieve +16 more

Transparency and reproducibility in artificial intelligence

Nature(2020)10.1038/s41586-020-2766-y

N/A

0.929DataRank · unranked

487 citations

George Alexandru Adam, Ahmed Hosny, Farnoosh Khodakarami, Massive Analysis Quality Control (MAQC) Society Board of Directors, Matthias Fischer +26 more

Multivariable Association Discovery in Population-scale Meta-omics Studies

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.20.427420

N/A

0.923DataRank · unranked

469 citations

Ali Rahnavard, Lauren J. McIver, Siyuan Ma, Yancong Zhang, Long H. Nguyen +15 more

Reporting guidelines for human microbiome research: the STORMS checklist

Nature Medicine(2021)10.1038/s41591-021-01552-x

N/A

0.918DataRank · unranked

454 citations

Audrey Renson, Genomic Standards Consortium, Cesare Furlanello, Shaimaa Elsafoury, Ludwig Geistlinger +98 more

Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma

Nature Medicine(2022)10.1038/s41591-022-01695-5

N/A

0.914DataRank · unranked

443 citations

Andrew Maltez Thomas, Laura A. Bolte, Johannes R. Björk, Laura Kist de Ruijter, Federica Armanini +35 more

Large-scale metagenomic analysis of oral microbiomes reveals markers for autism spectrum disorders

Nature Communications(2024)10.1038/s41467-024-53934-7

N/A

0.787DataRank · unranked

33 citations

Michele Filosi, Moreno Zolfo, Lucas G. Casten, Albert García-Valiente, Stefania Mattevi +18 more

Longitudinal gut microbiome changes in immune checkpoint blockade-treated advanced melanoma

Nature Medicine(2024)10.1038/s41591-024-02803-3

N/A

0.736DataRank · unranked

134 citations

Laura A. Bolte, Andrew Maltez Thomas, Karla A. Lee, Niccolò Rossi, Thijs T. Wind +35 more

Multiomic Analysis of Subtype Evolution and Heterogeneity in High-Grade Serous Ovarian Carcinoma

Cancer Research(2020)10.1158/0008-5472.can-20-0521

N/A

0.728DataRank · unranked

127 citations

Sehyun Oh, Marcel Ramos, Lucas Schiffer, Rebecca S. LaRue, Christine Henzler +16 more

lefser: implementation of metagenomic biomarker discovery tool, LEfSe, in R

Bioinformatics(2024)10.1093/bioinformatics/btae707

N/A

0.596DataRank · unranked

52 citations

Samuel David Gamboa-Tuz, Marcel Ramos, Nicola Segata, Levi Waldron, Sehyun Oh +1 more

GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases

Nature Communications(2022)10.1038/s41467-022-31411-3

N/A

0.523DataRank · unranked

14 citations

Ludwig Geistlinger, Marcel Ramos, Daniel Blankenberg, Marius van den Beek, Jaclyn N. Taroni +5 more

SIMON: Open-Source Knowledge Discovery Platform

Patterns(2021)10.1016/j.patter.2020.100178

N/A

0.483DataRank · unranked

24 citations

Ivan Tomic, Levi Waldron, Ludwig Geistlinger, Max Kühn, Rachel L. Spreng +13 more

Meta-analysis of 22,710 human microbiome metagenomes defines an oral-to-gut microbial enrichment score and associations with host health and disease

Nature Communications(2025)10.1038/s41467-025-66888-1

Top 41%

0.461DataRank

Top 41%17 citations

Giacomo Antonello, Lucas Schiffer, Davide Golzato, Andres Wokaty, Francesco Beghini +32 more

The relationship between anxiety, health, and potential stressors among adults in the United States during the COVID-19 pandemic

medRxiv(2020)10.1101/2020.10.30.20221440

Top 41%

0.459DataRank

Top 41%8 citations

McKaylee Robertson, Amanda Berry, Andrew Maroko, Rebecca Zimba, Christian Grov +8 more

Curated Single Cell Multimodal Landmark Datasets for R/Bioconductor

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.27.466079

Top 45%

0.415DataRank

Top 45%4 citations

Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger +7 more

Integrated annotation prioritizes metabolites with bioactivity in inflammatory bowel disease

Molecular Systems Biology(2024)10.1038/s44320-024-00027-8

N/A

0.415DataRank · unranked

11 citations

Sena Bae, Yancong Zhang, Eunyoung Chun, Julián Ávila-Pacheco, Ludwig Geistlinger +11 more

International Society for Extracellular Vesicles workshop. QuantitatEVs: Multiscale analyses, from bulk to single extracellular vesicle

Journal of Extracellular Biology(2024)10.1002/jex2.137

N/A

0.369DataRank · unranked

8 citations

Alessandro Gori, Caterina Nardella, Mari Palviainen, Marija Holcar, Ioannis Sotiropoulos +37 more

BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures

medRxiv(2022)10.1101/2022.10.24.22281483

Top 55%

0.301DataRank

Top 55%3 citations

Chloe Mirzayi, Fatima Zohra, Rimsha Azhar, Shaimaa Elsafoury, Claire Grieve +16 more

Best practices to evaluate the impact of biomedical research software—metric collection beyond citations

Bioinformatics(2024)10.1093/bioinformatics/btae469

N/A

0.292DataRank · unranked

6 citations

Andrei A. Ivanov, John Chamberlin, David A. Hanauer, Candace L. Savonen, M Goldman +22 more

Orchestrating Spatial Transcriptomics Analysis with Bioconductor

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.20.688607

Top 59%

0.260DataRank

Top 59%3 citations

Yixing Dong, Ilaria Billato, Peiying Cai, Martin Emons, Samuel Gunz +29 more

Ecological determinants of altruism in prokaryote antivirus defense

Biology Direct(2025)10.1186/s13062-025-00699-8

N/A

0.165DataRank · unranked

2 citations

Kira S. Makarova, Yuri I. Wolf, Levi Waldron, Eugene V. Koonin, Nash D. Rochman +1 more

Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful?

arXiv (Cornell University)(2023)10.48550/arxiv.2306.03255

N/A

0.165DataRank · unranked

2 citations

Andrei A. Ivanov, John Chamberlin, David A. Hanauer, Candace L. Savonen, Mary J. Goldman +22 more

GenomicSuperSignature: interpretation of RNA-seq experiments through robust, efficient comparison to public databases

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.26.445900

Top 78%

0.104DataRank

Top 78%1 citations

Ludwig Geistlinger, Marcel Ramos, Daniel Blankenberg, Marius van den Beek, Jaclyn N. Taroni +5 more

Data Mining to Guide a Program to Prevent Infection Related Readmissions From Skilled Nursing Facilities

Infection Control and Hospital Epidemiology(2020)10.1017/ice.2020.507

N/A

0.104DataRank · unranked

1 citations

Julie A. Klock, Dan Ding, Jennifer Lighter, Kwesi Daniel, Levi Waldron +1 more

Ecological determinants of altruism in prokaryote antivirus defense

Research Square(2025)10.21203/rs.3.rs-7165116/v1

N/A

0DataRank · unranked

0 citations

Kira S. Makarova, Yuri I. Wolf, Levi Waldron, Eugene V. Koonin, Nash D. Rochman +1 more

Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome data

Genome biology(2020)10.1186/s13059-020-02104-1

N/A

0DataRank · unranked

142 citations

Chiara Romualdi, Levi Waldron, Davide Risso, Nicola Vitulo, Matteo Calgaro

SARS-CoV-2 Testing Service Preferences of Adults in the United States: Discrete Choice Experiment

JMIR Public Health and Surveillance(2020)10.2196/25546

N/A

0DataRank · unranked

37 citations

Sarah Kulkarni, Amanda Berry, William You, Chloe Mirzayi, Drew A. Westmoreland +9 more

Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.15.907964

N/A

0DataRank · unranked

3 citations

Chiara Romualdi, Levi Waldron, Davide Risso, Nicola Vitulo, Matteo Calgaro

SARS-CoV-2 Testing Service Preferences of Adults in the United States: Discrete Choice Experiment (Preprint)

(2020)10.2196/preprints.25546

N/A

0DataRank · unranked

0 citations

Sarah Kulkarni, Amanda Berry, William You, Chloe Mirzayi, Drew A. Westmoreland +9 more

High-sensitivity pattern discovery in large, paired multi-omic datasets

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.11.468183

N/A

0DataRank · unranked

8 citations

Kathleen Sucipto, Ali Rahnavard, Eric A. Franzosa, Lauren J. McIver, Jason Lloyd‐Price +7 more

High-sensitivity pattern discovery in large, paired multiomic datasets

Bioinformatics(2022)10.1093/bioinformatics/btac232

N/A

0DataRank · unranked

83 citations

Kathleen Sucipto, Ali Rahnavard, Eric A. Franzosa, Lauren J. McIver, Jason Lloyd‐Price +7 more

RaggedExperiment: the missing link between genomic ranges and matrices in Bioconductor

Bioinformatics(2023)10.1093/bioinformatics/btad330

N/A

0DataRank · unranked

1 citations

Martin Morgan, Ludwig Geistlinger, Vincent J. Carey, Levi Waldron, Marcel Ramos

Data from Consensus on Molecular Subtypes of High-Grade Serous Ovarian Carcinoma

(2023)10.1158/1078-0432.c.6528887.v1

N/A

0DataRank · unranked

0 citations

Lavanya Kannan, Ludwig Geistlinger, Victor Kofia, Zhaleh Safikhani, Deena M.A. Gendoo +5 more

Ecological Determinants of Altruism in Prokaryote Antivirus Defense

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.05.622165

N/A

0DataRank · unranked

0 citations

Kira S. Makarova, Yuri I. Wolf, Levi Waldron, Eugene V. Koonin, Nash D. Rochman +1 more

Inferring the Timing of Antiretroviral Therapy by Zero-Inflated Random Change Point Models Using Longitudinal Data Subject to Left-Censoring

Algorithms(2025)10.3390/a18060346

N/A

0DataRank · unranked

0 citations

McKaylee Robertson, Sarah Braunstein, David B. Hanna, Uriel R. Felsen, Levi Waldron +2 more

Levi Waldron

Indexed papers

Top data-sharing exemplar

Papers