Yang-Yu Liu

Biochemistry, Genetics and Molecular BiologyPhysics and AstronomyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile

0.545Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Identifying chronic obstructive pulmonary disease from integrative omics and clustering in lung tissue

BMC Pulmonary Medicine(2023)10.1186/s12890-023-02389-5

Top 36%

0.545DataRank

Top 36%12 citations

Jarrett D. Morrow, Xu‐Wen Wang, Yang-Yu Liu, Dawn L. DeMeo, Craig P. Hersh +6 more

Papers

Driven by 92 papers — median percentile 64. Top paper: “Finding key players in complex networks through deep reinforcement learning”.

Finding key players in complex networks through deep reinforcement learning

Nature Machine Intelligence(2020)10.1038/s42256-020-0177-2

N/A

9.3DataRank · unranked

413 citations

Li Zeng, Yizhou Sun, Yang-Yu Liu, Changjun Fan

Establishment and resilience of transplanted gut microbiota in aged mice

iScience(2021)10.1016/j.isci.2021.103654

N/A

1.2DataRank · unranked

33 citations

Jinhui Tang, Qingqing Lv, Yuxiang Tan, Xiaoxiao Dong, Hongbin Liu +9 more

Evolution of cooperation on temporal networks

Nature Communications(2020)10.1038/s41467-020-16088-w

N/A

0.823DataRank · unranked

240 citations

Lei Zhou, Qi Su, Sean P. Cornelius, Yang-Yu Liu, Long Wang +2 more

Stability of ecological systems: A theoretical review

Physics Reports(2024)10.1016/j.physrep.2024.08.001

N/A

0.733DataRank · unranked

27 citations

Xu‐Wen Wang, Yang-Yu Liu, Can Chen

An ecological framework to understand the efficacy of fecal microbiota transplantation

Nature Communications(2020)10.1038/s41467-020-17180-x

N/A

0.695DataRank · unranked

102 citations

Marco Tulio Angulo, Songyang Lao, Scott T. Weiss, Yang-Yu Liu, Yandong Xiao

Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics

Nature Communications(2023)10.1038/s41467-023-39149-2

N/A

0.655DataRank · unranked

78 citations

Tong Wang, Zhibin Ning, Xu Zhang, James Butcher, Joeselle M. Serrana +7 more

Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome

Microbiome(2021)10.1186/s40168-021-01102-0

N/A

0.624DataRank · unranked

63 citations

Shuaiming Jiang, Dongxue Huo, Celeste Allaband, Mehrbod Estaki, Victor Cantu +10 more

Age-related loss of gene-to-gene transcriptional coordination among single cells

Nature Metabolism(2020)10.1038/s42255-020-00304-4

N/A

0.587DataRank · unranked

49 citations

Guy Amit, Dana Vaknin, Tom Snir, Sol Efroni, Peter J. Castaldi +4 more

Assessment of community efforts to advance network-based prediction of protein–protein interactions

Nature Communications(2023)10.1038/s41467-023-37079-7

N/A

0.584DataRank · unranked

48 citations

Lorenzo Madeddu, Kerstin Spirohn, Leonardo Martini, Adriano Fazzone, Luca Becchetti +26 more

Longitudinal Association Between Muscle Loss and Mortality in Ever Smokers

CHEST Journal(2021)10.1016/j.chest.2021.10.047

N/A

0.571DataRank · unranked

44 citations

Rafael Moreta-Martínez, Wassim W. Labaki, Matthew Strand, Elizabeth A. Regan, Jessica Bon +70 more

Removal of false positives in metagenomics-based taxonomy profiling via targeting Type IIB restriction sites

Nature Communications(2023)10.1038/s41467-023-41099-8

N/A

0.550DataRank · unranked

38 citations

Jiang Liu, Meng Zhang, Tong Wang, Shi Huang, Scott T. Weiss +2 more

Identifying chronic obstructive pulmonary disease from integrative omics and clustering in lung tissue

BMC Pulmonary Medicine(2023)10.1186/s12890-023-02389-5

Top 36%

0.545DataRank

Top 36%12 citations

Jarrett D. Morrow, Xu‐Wen Wang, Yang-Yu Liu, Dawn L. DeMeo, Craig P. Hersh +6 more

Data-driven prediction of colonization outcomes for complex microbial communities

Nature Communications(2024)10.1038/s41467-024-46766-y

N/A

0.510DataRank · unranked

29 citations

Xu‐Wen Wang, Zining Tao, Tong Wang, Wenlong Zuo, Yu Zeng +3 more

Rejuvenating the human gut microbiome

Trends in Molecular Medicine(2022)10.1016/j.molmed.2022.05.005

N/A

0.494DataRank · unranked

26 citations

Scott T. Weiss, Yang-Yu Liu, Shanlin Ke

Origins of scaling laws in microbial dynamics

Physical Review Research(2023)10.1103/physrevresearch.5.013004

N/A

0.406DataRank · unranked

14 citations

Yang-Yu Liu, Xu‐Wen Wang

Overcome Competitive Exclusion in Ecosystems

iScience(2020)10.1016/j.isci.2020.101009

N/A

0.396DataRank · unranked

13 citations

Yang-Yu Liu, Xin Wang

A computational method to dissect colonization resistance of the gut microbiota against pathogens

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100576

N/A

0.373DataRank · unranked

11 citations

Yandong Xiao, Scott T. Weiss, Xinhua Chen, Ciarán P. Kelly, Yang-Yu Liu +1 more

Microbiome-based correction for random errors in nutrient profiles derived from self-reported dietary assessments

Nature Communications(2024)10.1038/s41467-024-53567-w

N/A

0.345DataRank · unranked

9 citations

Yuanqing Fu, Menglei Shuai, Ju‐Sheng Zheng, Lu Zhu, Andrew T. Chan +5 more

Pairing metagenomics and metaproteomics to characterize ecological niches and metabolic essentiality of gut microbiomes

ISME Communications(2024)10.1093/ismeco/ycae063

N/A

0.345DataRank · unranked

9 citations

Leyuan Li, Daniel Figeys, Yang-Yu Liu, Tong Wang

Dissecting the Role of the Human Microbiome in COVID-19 via Metagenome-assembled Genomes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.09.483704

N/A

0.261DataRank · unranked

3 citations

Scott T. Weiss, Yang-Yu Liu, Shanlin Ke

Challenges in Benchmarking Metagenomic Profilers

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.14.382994

N/A

0.241DataRank · unranked

4 citations

Shi Huang, Meng Zhang, Qiyun Zhu, Niina Haiminen, Anna Paola Carrieri +6 more

Fulfilled Mind, Healthy Gut? Relationships of Eudaimonic Psychological Well-Being With the Gut Microbiome in Postmenopausal Women

Psychosomatic Medicine(2024)10.1097/psy.0000000000001278

N/A

0.208DataRank · unranked

3 citations

Shanlin Ke, Shelley S. Tworoger, Tianyi Huang, Andrew T. Chan, Laura D. Kubzansky +2 more

Data-driven prediction of colonization outcomes for complex microbial communities

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.19.537502

N/A

0.202DataRank · unranked

2 citations

Zining Tao, Tong Wang, Wenlong Zuo, Yu Zeng, Yang-Yu Liu +3 more

Revealing Protein-Level Functional Redundancy in the Human Gut Microbiome using Ultra-deep Metaproteomics

Research Square(2021)10.21203/rs.3.rs-785043/v1

N/A

0.165DataRank · unranked

2 citations

Zhibin Ning, Xu Zhang, James Butcher, Caitlin M. A. Simopoulos, Janice Mayne +5 more

Impact of temporal pH fluctuations on the coexistence of nasal bacteria

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.15.298778

N/A

0.104DataRank · unranked

1 citations

M. Javad Akbari, Samantha Dyckman, Nannan Zhao, Yang-Yu Liu, Babak Momeni +1 more

Establishment and Resilience of Transplanted Gut Microbiota in Aged Mice

Research Square(2021)10.21203/rs.3.rs-487289/v1

N/A

0DataRank · unranked

0 citations

Jinhui Tang, Qingqing Lv, Yuxiang Tan, Xiaoxiao Dong, Hongbin Liu +9 more

Universal adaptive evolution strategy of probiotic Lactobacillus plantarum to gut selection pressure from humans, mice and zebrafish

Research Square(2021)10.21203/rs.3.rs-106737/v1

N/A

0DataRank · unranked

0 citations

Shuaiming Jiang, Dongxue Huo, Celeste Allaband, Mehrbod Estaki, Victor Cantu +9 more

Establishment and Resilience of Transplanted Gut Microbiota in Aged Mice

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.18.435923

N/A

0DataRank · unranked

0 citations

Jinhui Tang, Qingqing Lv, Yuxiang Tan, Xiaoxiao Dong, Hongbin Liu +9 more

Predicting microbiome compositions from species assemblages through deep learning

iMeta(2022)10.1002/imt2.3

N/A

0DataRank · unranked

56 citations

Xu‐Wen Wang, Yang-Yu Liu, Marco Tulio Angulo, Sebastian Michel-Mata

Dissecting the role of the human microbiome in COVID-19 via metagenome-assembled genomes

Nature Communications(2022)10.1038/s41467-022-32991-w

N/A

0DataRank · unranked

54 citations

Scott T. Weiss, Yang-Yu Liu, Shanlin Ke

Association of the gut microbiome and metabolome with wheeze frequency in childhood asthma

Journal of Allergy and Clinical Immunology(2022)10.1016/j.jaci.2022.02.005

N/A

0DataRank · unranked

39 citations

Sandra Dedrick, Babak Momeni, Rachel S. Kelly, Robert S. Zeiger, George O'connor +10 more

Analysis of Intestinal Mycobiota of Patients with Clostridioides difficile Infection among a Prospective Inpatient Cohort

Microbiology Spectrum(2022)10.1128/spectrum.01362-22

N/A

0DataRank · unranked

14 citations

Lamei Wang, Shanlin Ke, Ciarán P. Kelly, Nira R. Pollock, Javier Villafuerte-Gálvez +7 more

A Computational Method to Dissect Colonization Resistance of the Gut Microbiota against Pathogens

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.06.475215

N/A

0DataRank · unranked

5 citations

Yandong Xiao, Scott T. Weiss, Xinhua Chen, Ciarán P. Kelly, Yang-Yu Liu +1 more

Predicting metabolomic profiles from microbial composition through neural ordinary differential equations

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.23.497381

N/A

0DataRank · unranked

4 citations

Xu‐Wen Wang, Kathleen Lee‐Sarwar, Augusto A. Litonjua, Scott T. Weiss, Yizhou Sun +3 more

Pairing Metagenomics and Metaproteomics to Characterize Ecological Niches and Metabolic Essentiality of gut microbiomes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.04.515228

N/A

0DataRank · unranked

3 citations

Leyuan Li, Daniel Figeys, Yang-Yu Liu, Tong Wang

Teasing out Missing Reactions in Genome-scale Metabolic Networks through Graph Convolutional Networks

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.27.497720

N/A

0DataRank · unranked

2 citations

Chen Liao, Yang-Yu Liu, Can Chen

Identifying keystone species in microbial communities using deep learning

Nature Ecology & Evolution(2023)10.1038/s41559-023-02250-2

N/A

0DataRank · unranked

89 citations

Zheng Sun, Huijue Jia, Sebastian Michel-Mata, Marco Tulio Angulo, Lei Dai +4 more

Teasing out missing reactions in genome-scale metabolic networks through hypergraph learning

Nature Communications(2023)10.1038/s41467-023-38110-7

N/A

0DataRank · unranked

67 citations

Chen Liao, Yang-Yu Liu, Can Chen

The emerging role of the gut microbiome in posttraumatic stress disorder

Brain Behavior and Immunity(2023)10.1016/j.bbi.2023.09.005

N/A

0DataRank · unranked

66 citations

Jakob Hartmann, Kerry J. Ressler, Yang-Yu Liu, Karestan C. Koenen, Shanlin Ke

Revealing the importance of prenatal gut microbiome in offspring neurodevelopment in humans

EBioMedicine(2023)10.1016/j.ebiom.2023.104491

N/A

0DataRank · unranked

62 citations

Kathleen Lee‐Sarwar, Rachel S. Kelly, Jessica Lasky‐Su, Augusto A. Litonjua, Scott T. Weiss +2 more

A Survey on Hyperlink Prediction

IEEE Transactions on Neural Networks and Learning Systems(2023)10.1109/tnnls.2023.3286280

N/A

0DataRank · unranked

59 citations

Yang-Yu Liu, Can Chen

Predicting metabolomic profiles from microbial composition through neural ordinary differential equations

Nature Machine Intelligence(2023)10.1038/s42256-023-00627-3

N/A

0DataRank · unranked

53 citations

Xu‐Wen Wang, Kathleen Lee‐Sarwar, Augusto A. Litonjua, Scott T. Weiss, Yizhou Sun +3 more

Graph convolutional network-based feature selection for high-dimensional and low-sample size data

Bioinformatics(2023)10.1093/bioinformatics/btad135

N/A

0DataRank · unranked

40 citations

Scott T. Weiss, Yang-Yu Liu, Can Chen

Controlling the human microbiome

Cell Systems(2023)10.1016/j.cels.2022.12.010

N/A

0DataRank · unranked

36 citations

Yang-Yu Liu

Benchmarking omics-based prediction of asthma development in children

Respiratory Research(2023)10.1186/s12931-023-02368-8

N/A

0DataRank · unranked

15 citations

Tong Wang, Darius P. Schaub, Can Chen, Zheng Sun, Shanlin Ke +11 more

Ecological dynamics imposes fundamental challenges in community‐based microbial source tracking

iMeta(2023)10.1002/imt2.75

N/A

0DataRank · unranked

20 citations

Lu Wu, Lei Dai, Xiaole Yin, Tong Zhang, Scott T. Weiss +2 more

Association of Vitamin D Level and Maternal Gut Microbiome during Pregnancy: Findings from a Randomized Controlled Trial of Antenatal Vitamin D Supplementation

Nutrients(2023)10.3390/nu15092059

N/A

0DataRank · unranked

15 citations

Diane R. Gold, Scott T. Weiss, Augusto A. Litonjua, Kathleen Lee‐Sarwar, Yang-Yu Liu +1 more

Nutritional redundancy in the human diet and its application in phenotype association studies

Nature Communications(2023)10.1038/s41467-023-39836-0

N/A

0DataRank · unranked

11 citations

Yang Hu, Giulia Menichetti, Francine Grodstein, Shilpa N Bhupathiraju, Qi Sun +5 more

Prenatal and perinatal influences on the microbiome: Clinical implications

Journal of Allergy and Clinical Immunology(2023)10.1016/j.jaci.2023.09.026

N/A

0DataRank · unranked

3 citations

Yang-Yu Liu, Augusto A. Litonjua, Scott T. Weiss, Kathleen Lee‐Sarwar

Early life gut microbiome in children following spontaneous preterm birth and maternal preeclampsia

iScience(2023)10.1016/j.isci.2023.108311

N/A

0DataRank · unranked

3 citations

Kathleen Lee‐Sarwar, Zheng Lü, Arya Yadama, Nancy Laranjo, Vincent J. Carey +9 more

Predicting metabolite response to dietary intervention using deep learning

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.14.532589

N/A

0DataRank · unranked

8 citations

Hannah D. Holscher, Sergei Maslov, Frank B. Hu, Scott T. Weiss, Yang-Yu Liu +1 more

Identifying keystone species in microbial communities using deep learning

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.15.532858

N/A

0DataRank · unranked

6 citations

Zheng Sun, Huijue Jia, Sebastian Michel-Mata, Marco Tulio Angulo, Lei Dai +4 more

Association of vitamin D level and maternal gut microbiome during pregnancy: Findings from a randomized controlled trial of antenatal vitamin D supplementation

medRxiv(2023)10.1101/2023.04.04.23288136

N/A

0DataRank · unranked

5 citations

Diane R. Gold, Scott T. Weiss, Augusto A. Litonjua, Kathleen Lee‐Sarwar, Yang-Yu Liu +1 more

Data-driven prediction of colonization outcomes for complex microbial communities

Research Square(2023)10.21203/rs.3.rs-2864317/v1

N/A

0DataRank · unranked

1 citations

Xu‐Wen Wang, Zining Tao, Tong Wang, Wenlong Zuo, Yu Zeng +3 more

Genotype-microbiome-metabolome associations in early childhood, and their link to BMI and childhood obesity

medRxiv(2023)10.1101/2023.11.13.23298467

N/A

0DataRank · unranked

1 citations

Zheng Sun, Diane R. Gold, Augusto A. Litonjua, Scott T. Weiss, Kathleen Lee‐Sarwar +2 more

Microbiome-based correction for random errors in nutrient profiles derived from self-reported dietary assessments

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.21.568102

N/A

0DataRank · unranked

0 citations

Yuanqing Fu, Menglei Shuai, Ju‐Sheng Zheng, Lu Zhu, Andrew T. Chan +5 more

Stability of Ecological Systems: A Theoretical Review

arXiv (Cornell University)(2023)10.48550/arxiv.2312.07737

N/A

0DataRank · unranked

0 citations

Xu‐Wen Wang, Yang-Yu Liu, Can Chen

Dynamics of collective cooperation under personalised strategy updates

Nature Communications(2024)10.1038/s41467-024-47380-8

N/A

0DataRank · unranked

30 citations

Sean P. Cornelius, Yang-Yu Liu, Aming Li, Yao Meng

Structured community transitions explain the switching capacity of microbial systems

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2312521121

N/A

0DataRank · unranked

24 citations

Jie Deng, Jen Nguyen, Yang-Yu Liu, Eric J. Alm, Ricard V. Solé +2 more

Artificial Intelligence for Microbiology and Microbiome Research

arXiv (Cornell University)(2024)10.48550/arxiv.2411.01098

N/A

0DataRank · unranked

2 citations

Tong Wang, Yang-Yu Liu, Xu‐Wen Wang

Stability of ecological systems: A theoretical review

UNC Libraries(2024)10.17615/d6br-3x85

N/A

0DataRank · unranked

0 citations

Can Chen, Yang-Yu Liu, Xu‐Wen Wang

Genotype–microbiome–metabolome associations in early childhood and their link to BMI

mLife(2024)10.1002/mlf2.12153

N/A

0DataRank · unranked

0 citations

Zheng Sun, Diane R. Gold, Jessica Lasky‐Su, Augusto A. Litonjua, Scott T. Weiss +3 more

Predicting metabolite response to dietary intervention using deep learning

Nature Communications(2025)10.1038/s41467-025-56165-6

N/A

0DataRank · unranked

28 citations

Hannah D. Holscher, Sergei Maslov, Frank B. Hu, Scott T. Weiss, Yang-Yu Liu +1 more

Deep learning for microbiome-informed precision nutrition

National Science Review(2025)10.1093/nsr/nwaf148

N/A

0DataRank · unranked

14 citations

Yang-Yu Liu

Longitudinal profiling of the human gut microbiome reveals temporal and personalized responses to inulin

iMetaOmics.(2025)10.1002/imo2.70029

N/A

0DataRank · unranked

4 citations

Hongbin Liu, Xu‐Wen Wang, Zining Tao, Zepeng Qu, Chaobi Lei +3 more

A statistical physics approach to integrating multi-omics data for disease-module detection

Cell Reports Methods(2025)10.1016/j.crmeth.2025.101183

N/A

0DataRank · unranked

1 citations

Min Hyung Ryu, Michael H. Cho, Peter J. Castaldi, Craig P. Hersh, Edwin K. Silverman +2 more

Deep Learning Transforms Phage-Host Interaction Discovery from Metagenomic Data

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.26.656232

N/A

0DataRank · unranked

0 citations

Tong Wang, Dan Huang, Xu‐Wen Wang, Scott T. Weiss, Joshua R. Korzenik +2 more

Adapting CRISPR-associated transposons for rapid and high-throughput reverse genetics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.31.685825

N/A

0DataRank · unranked

0 citations

Franz G. Zingl, Yi‐Yan Yang, Kaylee T. Nguyen, Yang-Yu Liu, Matthew K. Waldor +1 more

Comparative study of classifiers for human microbiome data

Medicine in Microecology(2020)10.1016/j.medmic.2020.100013

N/A

0DataRank · unranked

65 citations

Yang-Yu Liu, Xu‐Wen Wang

Covering Problems and Core Percolations on Hypergraphs

Physical Review Letters(2020)10.1103/physrevlett.124.248301

N/A

0DataRank · unranked

64 citations

Ang-Kun Wu, Haijun Zhou, Yang-Yu Liu, Bruno Coutinho

Link Prediction through Deep Generative Model

iScience(2020)10.1016/j.isci.2020.101626

N/A

0DataRank · unranked

15 citations

Yize Chen, Yang-Yu Liu, Xu‐Wen Wang

Tailoring Echo State Networks for Optimal Learning

iScience(2020)10.1016/j.isci.2020.101440

N/A

0DataRank · unranked

30 citations

Gang Yan, Yang-Yu Liu, Pau Vilimelis Aceituno

Peripheral blood microbial signatures in COPD

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.31.126367

N/A

0DataRank · unranked

1 citations

Peter J. Castaldi, Robert Chase, Jeong H. Yun, Sool Lee, Yang-Yu Liu +3 more

Structural vulnerability of quantum networks

Physical review. A/Physical review, A(2020)10.1103/physreva.101.052315

N/A

0DataRank · unranked

0 citations

Liang Tian, Bruno Coelho Coutinho, Yasser Omar, Yang-Yu Liu, Ang-Kun Wu

Deciphering functional redundancy in the human microbiome

Nature Communications(2020)10.1038/s41467-020-19940-1

N/A

0DataRank · unranked

0 citations

Xu‐Wen Wang, Ang-Kun Wu, Yuhang Fan, Jonathan Friedman, Amber Dahlin +5 more

Integrating Gut Microbiota and Host Immune Markers for Highly Accurate Diagnosis of Clostridioides difficile Infection

medRxiv(2020)10.1101/2020.04.27.20081653

N/A

0DataRank · unranked

0 citations

Nira R. Pollock, Xu‐Wen Wang, Xinhua Chen, Kaitlyn Daugherty, Qianyun Lin +6 more

A Computational Framework to Quantify Host-Microbiome Interactions in Clostridioides Difficile Infection

Research Square (Research Square)(2020)10.21203/rs.3.rs-65421/v1

N/A

0DataRank · unranked

0 citations

Nira R. Pollock, Wang Xu-wen, Xinhua Chen, Kaitlyn Daugherty, Qianyun Lin +6 more

Challenges in Benchmarking Metagenomic Profilers

Research Square(2020)10.21203/rs.3.rs-109702/v1

N/A

0DataRank · unranked

0 citations

Zheng Sun, Shi Huang, Meng Zhang, Qiyun Zhu, Niina Haiminen +6 more

Challenges in benchmarking metagenomic profilers

Nature Methods(2021)10.1038/s41592-021-01141-3

N/A

0DataRank · unranked

157 citations

Shi Huang, Meng Zhang, Qiyun Zhu, Niina Haiminen, Anna Paola Carrieri +6 more

Integrating gut microbiome and host immune markers to understand the pathogenesis of Clostridioides difficile infection

Gut Microbes(2021)10.1080/19490976.2021.1935186

N/A

0DataRank · unranked

118 citations

Nira R. Pollock, Xu‐Wen Wang, Xinhua Chen, Kaitlyn Daugherty, Qianyun Lin +6 more

Fecal Mycobiota Combined With Host Immune Factors Distinguish Clostridioides difficile Infection From Asymptomatic Carriage

Gastroenterology(2021)10.1053/j.gastro.2021.02.069

N/A

0DataRank · unranked

39 citations

Lamei Wang, Shanlin Ke, Javier Villafuerte-Gálvez, Nira R. Pollock, Caitlin Barrett +10 more

Gut Microbiota Predicts Healthy Late-Life Aging in Male Mice

Nutrients(2021)10.3390/nu13093290

N/A

0DataRank · unranked

25 citations

Sarah J. Mitchell, Michael R. MacArthur, Alice E. Kane, David Sinclair, Emily M. Venable +6 more

Structure-based identification of sensor species for anticipating critical transitions

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2104732118

N/A

0DataRank · unranked

20 citations

Jorge X. Velasco‐Hernández, Claude H. Moog, Yang-Yu Liu, Marco Tulio Angulo, Andrea Aparicio

Impact of colonization history on the composition of ecological systems

Physical review. E(2021)10.1103/physreve.103.052403

N/A

0DataRank · unranked

11 citations

Serguei Saavedra, Yang-Yu Liu, Nannan Zhao

Impact of Temporal pH Fluctuations on the Coexistence of Nasal Bacteria in an in silico Community

Frontiers in Microbiology(2021)10.3389/fmicb.2021.613109

N/A

0DataRank · unranked

9 citations

M. Javad Akbari, Samantha Dyckman, Nannan Zhao, Yang-Yu Liu, Babak Momeni +1 more

Peripheral blood microbial signatures in current and former smokers

Scientific Reports(2021)10.1038/s41598-021-99238-4

N/A

0DataRank · unranked

9 citations

Peter J. Castaldi, Robert Chase, Jeong H. Yun, Sool Lee, Yang-Yu Liu +2 more

Gut Microbiota predicts Healthy Late-life Aging in Male Mice

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.22.449472

N/A

0DataRank · unranked

3 citations

Sarah J. Mitchell, Michael R. MacArthur, Alice E. Kane, David Sinclair, Emily M. Venable +6 more

Assessment of community efforts to advance computational prediction of protein-protein interactions

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.22.461292

N/A

0DataRank · unranked

3 citations

Lorenzo Madeddu, Kerstin Spirohn, Leonardo Martini, Adriano Fazzone, Luca Becchetti +25 more

Predicting microbiome compositions from species assemblages through deep learning

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.17.448886

N/A

0DataRank · unranked

2 citations

Xu-Wen Wang, Yang-Yu Liu, Marco Tulio Angulo, Sebastian Michel-Mata

Revealing Protein-Level Functional Redundancy in the Human Gut Microbiome using Ultra-deep Metaproteomics

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.15.452564

N/A

0DataRank · unranked

2 citations

Zhibin Ning, Xu Zhang, James Butcher, Caitlin M. A. Simopoulos, Janice Mayne +5 more

Nutritional redundancy in the human diet and its application in phenotype association studies

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0DataRank · unranked

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