Stefan J. Green

Also affiliated with University of Illinois Chicago, APC Microbiome Institute, Genomics (United Kingdom), Saint Louis University, Rush University

Biochemistry, Genetics and Molecular BiologyEnvironmental ScienceMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 57 papers. Top paper: “An open label, non-randomized study assessing a prebiotic fiber intervention in a small cohort of Parkinson’s disease participants”.

An open label, non-randomized study assessing a prebiotic fiber intervention in a small cohort of Parkinson’s disease participants

Nature Communications(2023)10.1038/s41467-023-36497-x

N/A

2.2DataRank · unranked

112 citations

Robin M. Voigt, Thaisa M. Cantu-Jungles, Bruce R. Hamaker, Phillip A. Engen, Maliha Shaikh +12 more

Proof‐of‐principle demonstration of endogenous circadian system and circadian misalignment effects on human oral microbiota

The FASEB Journal(2021)10.1096/fj.202101153r

N/A

1.2DataRank · unranked

23 citations

Phillip A. Engen, Ankur Naqib, Jingyi Qian, Nina Vujovic, Nishath Rahman +5 more

Analysis of bacterial vaginosis, the vaginal microbiome, and sexually transmitted infections following the provision of menstrual cups in Kenyan schools: Results of a nested study within a cluster randomized controlled trial

PLoS Medicine(2023)10.1371/journal.pmed.1004258

N/A

0.889DataRank · unranked

37 citations

Garazi Zulaika, Walter Agingu, Elizabeth Nyothach, Runa Bhaumik, Stefan J. Green +5 more

High Prevalence of Lactobacillus crispatus Dominated Vaginal Microbiome Among Kenyan Secondary School Girls: Negative Effects of Poor Quality Menstrual Hygiene Management and Sexual Activity

Frontiers in Cellular and Infection Microbiology(2021)10.3389/fcimb.2021.716537

N/A

0.858DataRank · unranked

30 citations

Garazi Zulaika, Fredrick Otieno, Elizabeth Nyothach, Walter Agingu, Runa Bhaumik +5 more

Single-cell transcriptional changes associated with drug tolerance and response to combination therapies in cancer

Nature Communications(2021)10.1038/s41467-021-21884-z

N/A

0.845DataRank · unranked

279 citations

Abul Bashar Mir Md. Khademul Islam, Majd Ariss, Cammille C. Go, Alexandra E. Rader, Ryan D. Conrardy +10 more

The Microbiome Composition of a Man's Penis Predicts Incident Bacterial Vaginosis in His Female Sex Partner With High Accuracy

Frontiers in Cellular and Infection Microbiology(2020)10.3389/fcimb.2020.00433

N/A

0.648DataRank · unranked

74 citations

Dan Zhao, Stefan J. Green, Walter Agingu, Fredrick Otieno, Runa Bhaumik +3 more

A New Era for Space Life Science: International Standards for Space Omics Processing

Patterns(2020)10.1016/j.patter.2020.100148

N/A

0.609DataRank · unranked

57 citations

Richard Barker, Daniela Bezdan, Henry Cope, Sylvain V. Costes, Lovorka Degoricija +14 more

Characterization of an acid rock drainage microbiome and transcriptome at the Ely Copper Mine Superfund site

PLoS ONE(2020)10.1371/journal.pone.0237599

N/A

0.603DataRank · unranked

15 citations

George E. Chlipala, Kevin Kunstman, Stefan J. Green, Katherine Morillo, Kieran Bhave +4 more

Host Genetic Factors Associated with Vaginal Microbiome Composition in Kenyan Women

mSystems(2020)10.1128/msystems.00502-20

N/A

0.598DataRank · unranked

53 citations

Drew R. Nannini, Fredrick Otieno, Stefan J. Green, Walter Agingu, Alan Landay +3 more

Intestinal Barrier Dysfunction in the Absence of Systemic Inflammation Fails to Exacerbate Motor Dysfunction and Brain Pathology in a Mouse Model of Parkinson's Disease

Frontiers in Neurology(2022)10.3389/fneur.2022.882628

N/A

0.500DataRank · unranked

27 citations

Phillip A. Engen, Christopher B. Forsyth, Maliha Shaikh, Ankur Naqib, Sherry Wilber +8 more

Prebiotic inulin enhances gut microbial metabolism and anti-inflammation in apolipoprotein E4 mice with sex-specific implications

Scientific Reports(2023)10.1038/s41598-023-42381-x

N/A

0.449DataRank · unranked

19 citations

Lucille M. Yanckello, George E. Chlipala, Stefan J. Green, Chetan Aware, Amelia Runge +7 more

Menstrual cups to reduce bacterial vaginosis and STIs through reduced harmful sexual and menstrual practices among economically vulnerable women: protocol of a single arm trial in western Kenya

BMC Public Health(2024)10.1186/s12889-024-20491-z

N/A

0.443DataRank · unranked

9 citations

Fredrick Otieno, Linda Mason, Anna Maria van Eijk, Runa Bhaumik, Stefan J. Green +3 more

Water source, latrine type, and rainfall are associated with detection of non-optimal and enteric bacteria in the vaginal microbiome: a prospective observational cohort study nested within a cluster randomized controlled trial

BMC Infectious Diseases(2024)10.1186/s12879-024-10313-3

N/A

0.269DataRank · unranked

5 citations

Souvik Paul, Garazi Zulaika, Fredrick Otieno, Walter Agingu, Adit Chaudhary +7 more

The Gut Microbiome and Symptom Burden After Kidney Transplantation: An Overview and Research Opportunities

Biological Research For Nursing(2024)10.1177/10998004241256031

N/A

0.208DataRank · unranked

3 citations

Choa Sung, Suzanne Alvernaz, John R. Lee, Jennifer L. Chin, Mehdi Nayebpour +10 more

Skin microbiota differs between Black and White patients with cutaneous T-cell lymphoma

Journal of the American Academy of Dermatology(2025)10.1016/j.jaad.2025.08.049

N/A

0.192DataRank · unranked

2 citations

Z. Thomas, Lindsey D Ayanruoh, Gail H Enriquez, Lauren P. Chrisman, Madeline J. Hooper +11 more

Alterations in the cecal microbiome of New Zealand White rabbits due to the long-acting anticoagulant rodenticide brodifacoum

Toxicology Communications(2025)10.1080/24734306.2025.2500111

N/A

0.182DataRank · unranked

2 citations

Intakhar Ahmad, Zachary McDonald, Sergey Kalinin, Jackie Rocha, Ankit Tandon +10 more

Foxa deficiency restricts hepatitis B virus biosynthesis through epigenic silencing

Journal of Virology(2024)10.1128/jvi.01371-24

N/A

0.104DataRank · unranked

1 citations

Claudia E. Oropeza, Eddie Dekoven, Carly Matrenec, Mark Maienschein‐Cline, Cecilia S. Chau +4 more

Light-dark shift promotes colon carcinogenesis through accelerated colon aging

iScience(2024)10.1016/j.isci.2024.111560

N/A

0.104DataRank · unranked

1 citations

Phillip A. Engen, Abu Osman, Darbaz Adnan, Maliha Shaikh, Mostafa K. Abdel-Reheem +9 more

Ionizing radiation improves skin bacterial dysbiosis in cutaneous T-cell lymphoma

Frontiers in Immunology(2024)10.3389/fimmu.2024.1520214

N/A

0.104DataRank · unranked

1 citations

Yanzhen Pang, Madeline J. Hooper, G. Rajeev-Kumar, William Nguyen, Stefan J. Green +9 more

Functional recovery outcomes following acute stroke is associated with abundance of gut microbiota related to inflammation, butyrate and secondary bile acid

Frontiers in Rehabilitation Sciences(2022)10.3389/fresc.2022.1017180

N/A

0DataRank · unranked

19 citations

Elizabeth Powell, Stefan J. Green, George E. Chlipala, Jacqueline A. Frank, Andrew Yackzan +10 more

Exogenous Short Chain Fatty Acid Effects in APP/PS1 Mice

Frontiers in Neuroscience(2022)10.3389/fnins.2022.873549

N/A

0DataRank · unranked

18 citations

Benjamin C. Shaw, David J. Braun, Stefan J. Green, Joshua M. Morganti, Steven Estus +1 more

Inulin supplementation prior to mild traumatic brain injury mitigates gut dysbiosis, and brain vascular and white matter deficits in mice

Frontiers in Microbiomes(2022)10.3389/frmbi.2022.986951

N/A

0DataRank · unranked

14 citations

Ya‐Hsuan Chang, McKenna Sun, George E. Chlipala, Stefan J. Green, Zhentian Lei +6 more

Nasal Dysbiosis in Cutaneous T-Cell Lymphoma Is Characterized by Shifts in Relative Abundances of Non-Staphylococcus Bacteria

JID Innovations(2022)10.1016/j.xjidi.2022.100132

N/A

0DataRank · unranked

11 citations

Tessa M. LeWitt, Francesca L. Veon, Yanzhen Pang, George E. Chlipala, Leo Feferman +8 more

Individual target pharmacokinetic/pharmacodynamic attainment rates among meropenem-treated patients admitted to the ICU with hospital-acquired pneumonia

Journal of Antimicrobial Chemotherapy(2022)10.1093/jac/dkac245

N/A

0DataRank · unranked

4 citations

Marc H. Scheetz, Helen K. Donnelly, Alvaro Donayre, Mengjia Kang, Estefani Diaz +95 more

Vaginal microbiome community state types and high-risk human papillomaviruses in cervical precancer and cancer in North-central Nigeria

Research Square(2022)10.21203/rs.3.rs-2353710/v1

N/A

0DataRank · unranked

0 citations

Mamoudou Maïga, Stefan J. Green, Francis A. Magaji, Ali J. Maryam, Mark Ojogba Okolo +15 more

Multi-amplicon microbiome data analysis pipelines for mixed orientation sequences using QIIME2: Assessing reference database, variable region and pre-processing bias in classification of mock bacterial community samples

PLoS ONE(2023)10.1371/journal.pone.0280293

N/A

0DataRank · unranked

35 citations

Brian S. Wolff, Leonardo Varuzza, Stefan J. Green, Jennifer J. Barb, Katherine A. Maki

Gut microbiome association with brain imaging markers, APOE genotype, calcium and vegetable intakes, and obesity in healthy aging adults

Frontiers in Aging Neuroscience(2023)10.3389/fnagi.2023.1227203

N/A

0DataRank · unranked

20 citations

Stefan J. Green, Yael Jacobs, George E. Chlipala, Xin Xing, Sally Heil +7 more

Organic Matrix Derived from Host–Microbe Interplay Contributes to Pathological Renal Biomineralization

ACS Nanoscience Au(2023)10.1021/acsnanoscienceau.2c00060

N/A

0DataRank · unranked

10 citations

Yongmei Wang, Misun Kang, Claire M. Gabe, Sudarshan Srirangapatanam, A. B. Edwards +8 more

Vaginal Microbial Network Analysis Reveals Novel Taxa Relationships among Adolescent and Young Women with Incident Sexually Transmitted Infection Compared with Those Remaining Persistently Negative over a 30-Month Period

Microorganisms(2023)10.3390/microorganisms11082035

N/A

0DataRank · unranked

6 citations

Walter Agingu, Garazi Zulaika, Elizabeth Nyothach, Runa Bhaumik, Stefan J. Green +5 more

Sustaining the momentum for global cancer research and career development in the COVID-19 era: Lessons and challenges

Journal of Global Health(2023)10.7189/jogh.13.03010

N/A

0DataRank · unranked

0 citations

Francis A. Magaji, Maryam Ali, Mark Ojogba Okolo, Olugbenga A. Silas, Godwin Imade +5 more

Gut microbiome dysbiosis is associated with lumbar degenerative spondylolisthesis in symptomatic patients

JOR Spine(2024)10.1002/jsp2.70005

N/A

0DataRank · unranked

21 citations

Ana Chee, Darbaz Adnan, Sheila J. Toro, Harmanjeet Singh, Andrew Savoia +24 more

Distinctive evolution of alveolar T cell responses is associated with clinical outcomes in unvaccinated patients with SARS-CoV-2 pneumonia

Nature Immunology(2024)10.1038/s41590-024-01914-w

N/A

0DataRank · unranked

17 citations

Ziyou Ren, Karolina J. Senkow, Rogan A. Grant, Catherine A. Gao, Elizabeth S. Malsin +91 more

Epigenetics Embedding of Oral Feeding Skill Development in Preterm Infants

Advances in Neonatal Care(2024)10.1097/anc.0000000000001216

N/A

0DataRank · unranked

4 citations

Rosemary White‐Traut, Dina Tell, Stefan J. Green, Linda Witek Janusek, Thao Griffith

Gut microbiota analyses of cutaneous T-cell lymphoma patients undergoing narrowband ultraviolet B therapy reveal alterations associated with disease treatment

Frontiers in Immunology(2024)10.3389/fimmu.2023.1280205

N/A

0DataRank · unranked

10 citations

Lauren P. Chrisman, Gail L. Enriquez, Madeline J. Hooper, Teresa L. Griffin, Merjaan Ahmad +7 more

Topical antibiotics limit depigmentation in a mouse model of vitiligo

Pigment Cell & Melanoma Research(2024)10.1111/pcmr.13164

N/A

0DataRank · unranked

7 citations

Rachel Sohn, Cormac Cosgrove, Rohan Shivde, Emilia R. Dellacecca, Rasha T.A. Abdel-Aziz +5 more

Ten-eleven translocation (Tet) methylcytosine dioxygenase-dependent viral DNA demethylation mediates in vivo hepatitis B virus (HBV) biosynthesis

Journal of Virology(2024)10.1128/jvi.01721-23

N/A

0DataRank · unranked

4 citations

Claudia E. Oropeza, Eddie Dekoven, Grant Tarnow, Mark Maienschein‐Cline, Cecilia S. Chau +3 more

IgG autoantibodies in bullous pemphigoid induce a pathogenic MyD88-dependent pro-inflammatory response in keratinocytes

Nature Communications(2025)10.1038/s41467-025-62495-2

N/A

0DataRank · unranked

9 citations

Christian F. Guerrero-Juarez, Jing Li, Manuela Pigors, Shirin Emtenani, Yingzi Liu +20 more

Sleep fragmentation increases blood pressure and is associated with alterations in the gut microbiome and fecal metabolome in rats

Physiological Genomics(2020)10.1152/physiolgenomics.00039.2020

N/A

0DataRank · unranked

97 citations

Larisa Burke, Michael W. Calik, Miki Watanabe‐Chailland, Dagmar Sweeney, Lindsey E. Romick‐Rosendale +3 more

Novel short primers for next-generation 16S rRNA gene amplicon sequencing

Journal of Biomolecular Techniques JBT(2025)10.7171/001c.147352

N/A

0DataRank · unranked

0 citations

Jeremy J. Kahsen, Lok Yiu Ashley Wu, Stefan J. Green, Sonia K. Sherwani

MRSA Transmission in Intensive Care Units: Genomic Analysis of Patients, Their Environments, and Healthcare Workers

Clinical Infectious Diseases(2020)10.1093/cid/ciaa731

N/A

0DataRank · unranked

51 citations

Stefan J. Green, Koh Okamoto, Yoona Rhee, Mary K. Hayden, Michael Schoeny +3 more

Abnormal food timing and predisposition to weight gain: Role of barrier dysfunction and microbiota

Translational research(2020)10.1016/j.trsl.2020.11.007

N/A

0DataRank · unranked

50 citations

Phillip A. Engen, Darbaz Adnan, Shahram Sarrafi, Sherry Wilber, Maliha Shaikh +6 more

Microglia, inflammation and gut microbiota responses in a progressive monkey model of Parkinson's disease: A case series

Neurobiology of Disease(2020)10.1016/j.nbd.2020.105027

N/A

0DataRank · unranked

62 citations

Gunasingh Masilamoni, Doty Kempf, Alison R. Weiss, Travis M. Rotterman, Benjamin Murray +15 more

Characteristics of Women and Their Male Sex Partners Predict Bacterial Vaginosis Among a Prospective Cohort of Kenyan Women With Nonoptimal Vaginal Microbiota

Sexually Transmitted Diseases(2020)10.1097/olq.0000000000001259

N/A

0DataRank · unranked

20 citations

Walter Agingu, Rachel Nordgren, Stefan J. Green, Dulal K. Bhaumik, Robert C. Bailey +2 more

Identification of a periodontal pathogen and bihormonal cells in pancreatic islets of humans and a mouse model of periodontitis

Scientific Reports(2020)10.1038/s41598-020-65828-x

N/A

0DataRank · unranked

31 citations

Péter T. Tóth, Klara Valyi‐Nagy, Tibor Vályi-Nagy, Stefan J. Green, Rosann S. Marattil +8 more

Vaginal and Penile Microbiome Associations With Herpes Simplex Virus Type 2 in Women and Their Male Sex Partners

The Journal of Infectious Diseases(2020)10.1093/infdis/jiaa529

N/A

0DataRank · unranked

25 citations

Debarghya Nandi, Walter Agingu, Stefan J. Green, Dulal K. Bhaumik, Robert C. Bailey +2 more

Metabolic Profiling of Blood and Urine for Exploring the Functional Role of the Microbiota in Human Health

Biological Research For Nursing(2020)10.1177/1099800420941080

N/A

0DataRank · unranked

5 citations

Mark B. Lockwood, Katherine A. Maki, Alexis T. Franks, Abhrarup Roy, Rosario B. Jaime-Lara +7 more

Host Genetic Determinants of the Vaginal Microbiome in Kenyan Women

(2020)10.21203/rs.3.rs-17153/v1

N/A

0DataRank · unranked

0 citations

Drew R. Nannini, Fredrick Otieno, Stefan J. Green, Walter Agingu, Alan Landay +3 more

Berberine alters gut microbial function through modulation of bile acids

Research Square(2020)10.21203/rs.3.rs-32461/v3

N/A

0DataRank · unranked

0 citations

Saravanan Devendran, Heidi L. Doden, Lindsey K. Ly, Tyler Moore, Hajime Takei +12 more

Berberine alters gut microbial function through modulation of bile acids

Research Square(2020)10.21203/rs.3.rs-32461/v2

N/A

0DataRank · unranked

0 citations

Saravanan Devendran, Heidi L. Doden, Lindsey K. Ly, Tyler Moore, Hajime Takei +12 more

Berberine alters gut microbial function through modulation of bile acids

Research Square(2020)10.21203/rs.3.rs-32461/v1

N/A

0DataRank · unranked

0 citations

Saravanan Devendran, Heidi L. Doden, Lindsey K. Ly, Tyler Moore, Hajime Takei +12 more

Berberine alters gut microbial function through modulation of bile acids

BMC Microbiology(2021)10.1186/s12866-020-02020-1

N/A

0DataRank · unranked

35 citations

Saravanan Devendran, Heidi L. Doden, Lindsey K. Ly, Tyler Moore, Hajime Takei +12 more

Lactobacillus acidophilus Mitigates Osteoarthritis-Associated Pain, Cartilage Disintegration and Gut Microbiota Dysbiosis in an Experimental Murine OA Model

Biomedicines(2022)10.3390/biomedicines10061298

N/A

0DataRank · unranked

48 citations

Arivarasu Natarajan Anbazhagan, Gurjit Singh, Kaige Ma, Stefan J. Green, Megha Singhal +9 more

APOE genetics influence murine gut microbiome

Scientific Reports(2022)10.1038/s41598-022-05763-1

N/A

0DataRank · unranked

45 citations

Stefan J. Green, Lance A. Johnson, Steven Estus, Diana J. Zajac

Colonic Epithelial Circadian Disruption Worsens Dextran Sulfate Sodium–Induced Colitis

Inflammatory Bowel Diseases(2022)10.1093/ibd/izac219

N/A

0DataRank · unranked

26 citations

Phillip A. Engen, Maliha Shaikh, Ankur Naqib, Sherry Wilber, Shohreh Raeisi +17 more

Longitudinal Changes in the Composition of the Penile Microbiome Are Associated With Circumcision Status, HIV and HSV-2 Status, Sexual Practices, and Female Partner Microbiome Composition

Frontiers in Cellular and Infection Microbiology(2022)10.3389/fcimb.2022.916437

N/A

0DataRank · unranked

24 citations

Debarghya Nandi, Walter Agingu, Stefan J. Green, Fredrick Otieno, Dulal K. Bhaumik +2 more

Disrupted Circadian Rest-Activity Cycles in Inflammatory Bowel Disease Are Associated With Aggressive Disease Phenotype, Subclinical Inflammation, and Dysbiosis

Frontiers in Medicine(2022)10.3389/fmed.2021.770491

N/A

0DataRank · unranked

22 citations

Nicole Kochman, Jaimin Amin, Vijit Chouhan, Wesley Yim, Phillip A. Engen +8 more

Narrowband ultraviolet B response in cutaneous T-cell lymphoma is characterized by increased bacterial diversity and reduced Staphylococcus aureus and Staphylococcus lugdunensis

Frontiers in Immunology(2022)10.3389/fimmu.2022.1022093

N/A

0DataRank · unranked

20 citations

Gail L. Enriquez, Francesca L. Veon, Tessa M. LeWitt, Dagmar Sweeney, Stefan J. Green +6 more