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Multi-amplicon microbiome data analysis pipelines for mixed orientation sequences using QIIME2: Assessing reference database, variable region and pre-processing bias in classification of mock bacterial community samples

PLoS ONE(2023)10.1371/journal.pone.0280293Source: DataRank Database

Multi-amplicon microbiome data analysis pipelines for mixed orientation sequences using QIIME2: Assessing reference database, variable region and pre-processing bias in classification of mock bacterial community samples is a research paper published in PLoS ONE (2023). On theSindex it has a DataRank of 0. It has been cited 35 times.

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0DataRank · unranked

Scored on demand from live citation data

Open Access35 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (1 grants)Impact (FWCI 3.19)OA: goldTopics (28)IDs (PubMed, OpenAlex)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (5)

Brian S. Wolff ORCID,Leonardo Varuzza ORCID,Stefan J. Green ORCID,Jennifer J. Barb ORCID,Katherine A. Maki ORCID

Live enrichment

PubMed:36638095 OpenAlex:https://openalex.org/W4315928764

NIH Clinical Center

Grant: intramural research funds

FWCI

3.19

Citation Percentile

0.9%

Citation Trend

2022

2023

2024

2025

2026

goldLicense: cc-by

journalhttps://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0280293&type=printable

publisherhttps://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0280293&type=printable

publisherhttps://dx.plos.org/10.1371/journal.pone.0280293

journalhttps://doi.org/10.1371/journal.pone.0280293

repositoryhttps://pubmed.ncbi.nlm.nih.gov/36638095

Fields of Study

Gut microbiota and healthGenomics and Phylogenetic StudiesMetabolomics and Mass Spectrometry Studies

MeSH Terms

Data AnalysisBacteriaRNA, Ribosomal, 16SDatabases, FactualHigh-Throughput Nucleotide SequencingMicrobiota

Keywords

AmpliconMetagenomicsHuman Microbiome ProjectComputational biologyMicrobiomeWorkflowAmplicon sequencingIon semiconductor sequencingComputer scienceAnnotationBiologyData miningDNA sequencingDatabaseBioinformatics16S ribosomal RNAGeneticsPolymerase chain reactionGene