Philippe Lemey

Escola Bahiana de Medicina e Saúde Pública

Also affiliated with Rega Institute for Medical Research, KU Leuven

Biochemistry, Genetics and Molecular BiologyImmunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.4Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Genetic Diversity of Nipah Virus Across Spatial Scales

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae221

Top 21%

0.940DataRank

Top 21%18 citations

Noémie Lefrancq, Birgit Nikolay, Clifton McKee, Julien Cappelle, Vibol Hul +9 more

Papers

Driven by 93 papers — median percentile 67. Top paper: “Farmed fur animals harbour viruses with zoonotic spillover potential”.

Farmed fur animals harbour viruses with zoonotic spillover potential

Nature(2024)10.1038/s41586-024-07901-3

N/A

2.0DataRank · unranked

89 citations

Wenbo Wan, Yu Kang, Philippe Lemey, John H.‐O. Pettersson, Yuhai Bi +15 more

Unlocking capacities of genomics for the COVID-19 response and future pandemics

Nature Methods(2022)10.1038/s41592-022-01444-z

N/A

2.0DataRank · unranked

67 citations

Karishma Chhugani, Varuni Sarwal, Ram Ayyala, Harman Singh, Smruthi Karthikeyan +30 more

Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1

Science(2023)10.1126/science.adg6605

N/A

1.3DataRank · unranked

70 citations

John T. McCrone, Ben Lambert, Sumali Bajaj, Rhys Inward, Paolo Bosetti +35 more

Markov-Modulated Continuous-Time Markov Chains to Identify Site- and Branch-Specific Evolutionary Variation in BEAST

Systematic Biology(2020)10.1093/sysbio/syaa037

N/A

1.0DataRank · unranked

21 citations

Mandev S. Gill, Paul Bastide, Philippe Lemey, Marc A. Suchard, Guy Baele

BEAST X for Bayesian phylogenetic, phylogeographic and phylodynamic inference

Nature Methods(2025)10.1038/s41592-025-02751-x

N/A

0.960DataRank · unranked

72 citations

Xiang Ji, Gabriel W. Hassler, John T. McCrone, Yucai Shao, Zhenyu Zhang +6 more

Evaluating predictive markers for viral rebound and safety assessment in blood and lumbar fluid during HIV-1 treatment interruption

Journal of Antimicrobial Chemotherapy(2020)10.1093/jac/dkaa003

N/A

0.947DataRank · unranked

17 citations

Clarissa Van Hecke, Henrik Zetterberg, Dietmar Fuchs, Nele De Langhe, Sofie Rutsaert +11 more

The Genetic Diversity of Nipah Virus Across Spatial Scales

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae221

Top 21%

0.940DataRank

Top 21%18 citations

Noémie Lefrancq, Birgit Nikolay, Clifton McKee, Julien Cappelle, Vibol Hul +9 more

The Huanan Seafood Wholesale Market in Wuhan was the early epicenter of the COVID-19 pandemic

Science(2022)10.1126/science.abp8715

N/A

0.913DataRank · unranked

439 citations

Joshua I. Levy, Lorena M. Malpica Serrano, Alexander Crits‐Christoph, Jonathan E. Pekar, Stephen A. Goldstein +13 more

The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages

Cell(2021)10.1016/j.cell.2021.09.003

N/A

0.844DataRank · unranked

276 citations

Steven Weaver, Houriiyah Tegally, James Emmanuel San, Stephen D. Shank, Eduan Wilkinson +17 more

Geographic and Temporal Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted HIV-1 Drug Resistance: An Individual-Patient- and Sequence-Level Meta-Analysis

PLOS Medicine(2015)10.1371/journal.pmed.1001810

N/A

0.816DataRank · unranked

229 citations

Jose Luis Blanco, Michael R. Jordan, Jonathan Taylor, Philippe Lemey, Vici Varghese +88 more

Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2

Nature Communications(2020)10.1038/s41467-020-18877-9

N/A

0.784DataRank · unranked

185 citations

Samuel L. Hong, Verity Hill, Guy Baele, Chiara Poletto, Vittoria Colizza +8 more

Synonymous Substitution Rates Predict HIV Disease Progression as a Result of Underlying Replication Dynamics

PLoS Computational Biology(2007)10.1371/journal.pcbi.0030029

N/A

0.753DataRank · unranked

150 citations

Sergei L Kosakovsky Pond, Alexei J Drummond, Oliver G Pybus, Beth Shapiro, Helena Barroso +3 more

Gradients Do Grow on Trees: A Linear-TimeO(N)-Dimensional Gradient for Statistical Phylogenetics

Molecular Biology and Evolution(2020)10.1093/molbev/msaa130

N/A

0.736DataRank · unranked

43 citations

Zhenyu Zhang, Andrew J. Holbrook, Akihiko Nishimura, Guy Baele, Andrew Rambaut +3 more

Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function

Molecular Biology and Evolution(2022)10.1093/molbev/msac061

N/A

0.723DataRank · unranked

123 citations

Spyros Lytras, Alexander G. Lucaci, Wolfgang Maier, Björn Grüning, Stephen D. Shank +33 more

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2007295117

N/A

0.665DataRank · unranked

83 citations

Sergei L. Kosakovsky Pond, Simone Marini, Brittany Rife Magalis, Anne–Mieke Vandamme, Simon Dellicour +31 more

Assessing the role of live poultry trade in community-structured transmission of avian influenza in China

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.1906954117

N/A

0.637DataRank · unranked

69 citations

Xiang Zhao, Philippe Lemey, Marc A. Suchard, Yuhai Bi, Weifeng Shi +7 more

Archival influenza virus genomes from Europe reveal genomic variability during the 1918 pandemic

Nature Communications(2022)10.1038/s41467-022-29614-9

N/A

0.626DataRank · unranked

64 citations

Bram Vrancken, Matthias Budt, Ariane Düx, Sébastian Lequime, Şengül Boral +21 more

Data Integration in Bayesian Phylogenetics

Annual Review of Statistics and Its Application(2022)10.1146/annurev-statistics-033021-112532

N/A

0.625DataRank · unranked

18 citations

Andrew F. Magee, Zhenyu Zhang, Guy Baele, Philippe Lemey, Xiang Ji +3 more

SPREAD 4: online visualisation of pathogen phylogeographic reconstructions

Virus Evolution(2022)10.1093/ve/veac088

N/A

0.546DataRank · unranked

37 citations

Filip Bielejec, Juan Monetta, Simon Dellicour, Andrew Rambaut, Marc A. Suchard +3 more

Correction: Geographic and Temporal Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted HIV-1 Drug Resistance: An Individual-Patient- and Sequence-Level Meta-Analysis

PLOS Medicine(2015)10.1371/journal.pmed.1001845

N/A

0.500DataRank · unranked

27 citations

Jose Luis Blanco, Michael R. Jordan, Jonathan Taylor, Philippe Lemey, Vici Varghese +89 more

The role of high-risk geographies in the perpetuation of the HIV epidemic in rural South Africa: A spatial molecular epidemiology study

PLOS Global Public Health(2022)10.1371/journal.pgph.0000105

N/A

0.482DataRank · unranked

10 citations

Túlio de Oliveira, Tiago Gräf, Dennis Maletich Junqueira, Eduan Wilkinson, Philippe Lemey +4 more

Principled, practical, flexible, fast: A new approach to phylogenetic factor analysis

Methods in Ecology and Evolution(2022)10.1111/2041-210x.13920

N/A

0.470DataRank · unranked

22 citations

Brigida Gallone, Leandro Arístide, William L. Allen, Max R. Tolkoff, Andrew J. Holbrook +4 more

The evolutionary history of hepaciviruses

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.30.547218

Top 44%

0.427DataRank

Top 44%10 citations

Mahan Ghafari, AJ Holbrook, Ine Boonen, Nabil Amor, Stefano Catalano +24 more

Dispersion patterns of SARS-CoV-2 variants Gamma, Lambda and Mu in Latin America and the Caribbean

Nature Communications(2024)10.1038/s41467-024-46143-9

N/A

0.416DataRank · unranked

15 citations

Alexander A. Martínez, Gonzalo Bello, Simon Dellicour, Philippe Lemey, Vittoria Colizza +80 more

Comparative evolution of influenza A virus H1 and H3 head and stalk domains across host species

mBio(2023)10.1128/mbio.02649-23

N/A

0.345DataRank · unranked

9 citations

Sairah Khan, Philippe Lemey, Martha I. Nelson, Joshua L. Cherry, Nídia S. Trovão

Random-Effects Substitution Models for Phylogenetics via Scalable Gradient Approximations

Systematic Biology(2024)10.1093/sysbio/syae019

N/A

0.345DataRank · unranked

9 citations

Andrew J. Holbrook, Jonathan E. Pekar, Itzue W. Caviedes-Solis, Frederick A. Matsen, Guy Baele +5 more

Contemporary and historical human migration patterns shape hepatitis B virus diversity

Virus Evolution(2024)10.1093/ve/veae009

N/A

0.292DataRank · unranked

6 citations

Marijn Thijssen, Nídia S. Trovão, Andrea-Clemencia Pineda-Peña, Marijke Reynders, Thomas Mina +9 more

The genetic diversity of Nipah virus across spatial scales

medRxiv(2023)10.1101/2023.07.14.23292668

N/A

0.269DataRank · unranked

5 citations

Noémie Lefrancq, Birgit Nikolay, Clifton McKee, Julien Cappelle, Vibol Hul +9 more

Recently reported SARS-CoV-2 genomes suggested to be intermediate between the two early main lineages are instead likely derived

Virus Evolution(2025)10.1093/ve/veaf008

N/A

0.269DataRank · unranked

5 citations

Niema Moshiri, Philippe Lemey, Alexander Crits‐Christoph, Florence Débarre, Stephen A. Goldstein +6 more

International importance and spread of SARS-CoV-2 variants Alpha, Delta, and Omicron BA.1 into Spain

Communications Medicine(2025)10.1038/s43856-025-00912-9

N/A

0.241DataRank · unranked

4 citations

Samuel L. Hong, Nena Bollen, Simon Dellicour, Guy Baele, Marc A. Suchard +3 more

Dispersal history of SARS‐CoV‐2 in Galicia, Spain

Journal of Medical Virology(2024)10.1002/jmv.29773

N/A

0.241DataRank · unranked

4 citations

Nuria Estévez‐Gómez, Loretta De Chiara, Pilar Alvariño, Pedro Miguel Juiz-González, Isabel Torres‐Beceiro +46 more

Higher HIV-1 evolutionary rate is associated with cytotoxic T lymphocyte escape mutations in infants

Journal of Virology(2024)10.1128/jvi.00072-24

N/A

0.198DataRank · unranked

2 citations

Sophie Andrews, Mimi M. Hou, Christian Bruhn, Miguel Garcia-Knight, Jennifer A. Slyker +8 more

Relaxed Random Walks at Scale

Systematic Biology(2020)10.1093/sysbio/syaa056

N/A

0.104DataRank · unranked

1 citations

Xiang Ji, Zhenyu Zhang, Philippe Lemey, Marc A. Suchard, Alexander A. Fisher

Shrinkage-based Random Local Clocks with Scalable Inference

Molecular Biology and Evolution(2023)10.1093/molbev/msad242

N/A

0DataRank · unranked

15 citations

Xiang Ji, Akihiko Nishimura, Guy Baele, Philippe Lemey, Marc A. Suchard +1 more

Scalable Bayesian Divergence Time Estimation With Ratio Transformations

Systematic Biology(2023)10.1093/sysbio/syad039

N/A

0DataRank · unranked

12 citations

Alexander A. Fisher, Shuo Su, Jeffrey L. Thorne, Barney Potter, Philippe Lemey +3 more

Influenza A viruses in gulls in landfills and freshwater habitats in Minnesota, United States

Frontiers in Genetics(2023)10.3389/fgene.2023.1172048

N/A

0DataRank · unranked

12 citations

A. Th. Czaja, Francesca J. Cuthbert, Gene S. Tan, Philippe Lemey, Martha I. Nelson +2 more

Uncovering the endemic circulation of rabies in Cambodia

Molecular Ecology(2023)10.1111/mec.17087

N/A

0DataRank · unranked

7 citations

Laurent Dacheux, Philippe Lemey, Kirstyn Brunker, Laurence Ma, Cécile Troupin +8 more

Accelerating Bayesian inference of dependency between mixed-type biological traits

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011419

N/A

0DataRank · unranked

6 citations

Akihiko Nishimura, Nídia S. Trovão, Joshua L. Cherry, Andrew J. Holbrook, Xiang Ji +3 more

Accelerated evolution of SARS-CoV-2 in free-ranging white-tailed deer

Research Square(2023)10.21203/rs.3.rs-2574993/v1

N/A

0DataRank · unranked

19 citations

Sofya K. Garushyants, John Franks, Andrew F. Magee, Steven H. Overend, Devra Huey +24 more

Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.13.557637

N/A

0DataRank · unranked

13 citations

Joshua I. Levy, Jonathan E. Pekar, Stephen A. Goldstein, Reema Singh, Zach Hensel +17 more

The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.12.548617

N/A

0DataRank · unranked

12 citations

Spyros Lytras, Mahan Ghafari, Andrew F. Magee, Edyth Parker, Jennifer L. Havens +11 more

Many-core algorithms for high-dimensional gradients on phylogenetic trees

arXiv (Cornell University)(2023)10.48550/arxiv.2303.04390

N/A

0DataRank · unranked

0 citations

Xiang Ji, Guy Baele, Mathieu Fourment, Philippe Lemey, Frederick A. Matsen +2 more

Random-effects substitution models for phylogenetics via scalable gradient approximations

arXiv (Cornell University)(2023)10.48550/arxiv.2303.13642

N/A

0DataRank · unranked

0 citations

Andrew J. Holbrook, Jonathan E. Pekar, Itzue W. Caviedes-Solis, Fredrick A. Matsen, Guy Baele +5 more

Quantum Speedups for Multiproposal MCMC

arXiv (Cornell University)(2023)10.48550/arxiv.2312.01402

N/A

0DataRank · unranked

0 citations

Kuo-Chin Chen, Philippe Lemey, Marc A. Suchard, Andrew J. Holbrook, Min-Hsiu Hsieh +1 more

COVID-19 pandemic interventions reshaped the global dispersal of seasonal influenza viruses

Science(2024)10.1126/science.adq3003

N/A

0DataRank · unranked

101 citations

Joseph L.-H. Tsui, Bernardo Gutiérrez, Simón Busch Moreno, Louis du Plessis, Xiaowei Deng +8 more

Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic

Cell(2024)10.1016/j.cell.2024.08.010

N/A

0DataRank · unranked

89 citations

Joshua I. Levy, Jonathan E. Pekar, Stephen A. Goldstein, Reema Singh, Zach Hensel +18 more

Underdetected dispersal and extensive local transmission drove the 2022 mpox epidemic

Cell(2024)10.1016/j.cell.2024.02.003

N/A

0DataRank · unranked

58 citations

Nashwa Ahmed, Marlin D Figgins, Vittoria Colizza, Philippe Lemey, John T. McCrone +4 more

Synchrony of Bird Migration with Global Dispersal of Avian Influenza Reveals Exposed Bird Orders

Nature Communications(2024)10.1038/s41467-024-45462-1

N/A

0DataRank · unranked

47 citations

W Ben, Philippe Lemey, Lü Dong, Tong Mu, R. Alex Wiebe +15 more

How fast are viruses spreading in the wild?

PLoS Biology(2024)10.1371/journal.pbio.3002914

N/A

0DataRank · unranked

22 citations

Paul Bastide, Pauline Rocu, Denis Fargette, Olivier J. Hardy, Marc A. Suchard +3 more

Many-core algorithms for high-dimensional gradients on phylogenetic trees

Bioinformatics(2024)10.1093/bioinformatics/btae030

N/A

0DataRank · unranked

8 citations

Xiang Ji, Guy Baele, Mathieu Fourment, Philippe Lemey, Frederick A. Matsen +2 more

Integrating dynamical modeling and phylogeographic inference to characterize global influenza circulation

PNAS Nexus(2024)10.1093/pnasnexus/pgae561

N/A

0DataRank · unranked

4 citations

Emanuele Gustani‐Buss, Trevor Bedford, Marc A. Suchard, Nídia S. Trovão, Andrew Rambaut +4 more

How fast are viruses spreading in the wild?

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.10.588821

N/A

0DataRank · unranked

6 citations

Paul Bastide, Pauline Rocu, Denis Fargette, Olivier J. Hardy, Marc A. Suchard +3 more

Dispersal history of SARS-CoV-2 in Galicia, Spain

medRxiv(2024)10.1101/2024.02.27.24303385

N/A

0DataRank · unranked

1 citations

Nuria Estévez‐Gómez, Loretta De Chiara, Pilar Alvariño, Pedro Miguel Juiz-González, Isabel Torres‐Beceiro +46 more

The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2

Cell(2025)10.1016/j.cell.2025.03.035

N/A

0DataRank · unranked

24 citations

Spyros Lytras, Mahan Ghafari, Andrew F. Magee, Edyth Parker, Yu Wang +14 more

Extensive cross-species transmission of pathogens and antibiotic resistance genes in mammals neglected by public health surveillance

Cell(2025)10.1016/j.cell.2025.08.016

N/A

0DataRank · unranked

23 citations

Y Li, Haipeng Li, Ayidana Haerheng, Vanessa R. Marcelino, Meng Lu +14 more

HIPSTR: highest independent posterior subtree reconstruction in TreeAnnotator X

Bioinformatics(2025)10.1093/bioinformatics/btaf488

N/A

0DataRank · unranked

14 citations

Luiz Max Carvalho, Marius Brusselmans, Gytis Dudas, Xiang Ji, John T. McCrone +4 more

Recent advances in the inference of deep viral evolutionary history

Journal of Virology(2025)10.1128/jvi.00292-25

N/A

0DataRank · unranked

6 citations

Marc A. Suchard, Edward C. Holmes, Philippe Lemey, Jonathon C. O. Mifsud

Tracing more than two decades of Japanese encephalitis virus circulation in mainland China

Journal of Virology(2025)10.1128/jvi.01575-24

N/A

0DataRank · unranked

5 citations

Xinxin Li, Jie Chen, Philippe Lemey, Bram Vrancken, Shuo Su +3 more

Infinite Mixture Models for Improved Modeling of Across-Site Evolutionary Variation

Molecular Biology and Evolution(2025)10.1093/molbev/msaf199

N/A

0DataRank · unranked

0 citations

Guy Baele, Marc A. Suchard, Philippe Lemey, Mandev S. Gill

RNA virus genomes from centuries- to millennia-old Adélie penguin mummies

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.17.693957

N/A

0DataRank · unranked

0 citations

Chris Lauber, Katharina J. Hoff, Jennifer Klunk, Madeline Tapson, Emilio Mármol‐Sánchez +5 more

Infinite Mixture Models for Improved Modeling of Across-Site Evolutionary Variation

arXiv (Cornell University)(2024)10.48550/arxiv.2412.06042

N/A

0DataRank · unranked

0 citations

Guy Baele, Marc A. Suchard, Philippe Lemey, Mandev S. Gill

Genomic Epidemiology, Evolution, and Transmission Dynamics of Porcine Deltacoronavirus

Molecular Biology and Evolution(2020)10.1093/molbev/msaa117

N/A

0DataRank · unranked

180 citations

Xiang Ji, Wei He, Simon Dellicour, Shilei Wang, Gairu Li +13 more

Measles virus and rinderpest virus divergence dated to the sixth century BCE

Science(2020)10.1126/science.aba9411

N/A

0DataRank · unranked

171 citations

Sébastian Lequime, Livia Victoria Patrono, Bram Vrancken, Şengül Boral, Jan F. Gogarten +16 more

Bayesian Evaluation of Temporal Signal in Measurably Evolving Populations

Molecular Biology and Evolution(2020)10.1093/molbev/msaa163

N/A

0DataRank · unranked

157 citations

Philippe Lemey, Tanja Stadler, Simon Y. W. Ho, David A. Duchêne, Dhanasekaran Vijaykrishna +2 more

The emergence of SARS-CoV-2 in Europe and North America

Science(2020)10.1126/science.abc8169

N/A

0DataRank · unranked

429 citations

Jonathan E. Pekar, Brendan B. Larsen, Martha I. Nelson, Verity Hill, Jeffrey B. Joy +5 more

Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework

Nature Communications(2020)10.1038/s41467-020-19122-z

N/A

0DataRank · unranked

128 citations

Sébastian Lequime, Bram Vrancken, Mandev S. Gill, Paul Bastide, Karthik Gangavarapu +12 more

Hamiltonian Monte Carlo sampling to estimate past population dynamics using the skygrid coalescent model in a Bayesian phylogenetics framework

Wellcome Open Research(2020)10.12688/wellcomeopenres.15770.1

N/A

0DataRank · unranked

32 citations

Mandev S. Gill, Philippe Lemey, Marc A. Suchard, Guy Baele

Determinants of dengue virus dispersal in the Americas

Virus Evolution(2020)10.1093/ve/veaa074

N/A

0DataRank · unranked

12 citations

Nikita Sahadeo, Philippe Lemey, Albert J. Auguste, Marc A. Suchard, Andrew Rambaut +2 more

Massive Parallelization Boosts Big Bayesian Multidimensional Scaling

Journal of Computational and Graphical Statistics(2020)10.1080/10618600.2020.1754226

N/A

0DataRank · unranked

2 citations

Philippe Lemey, Guy Baele, Simon Dellicour, Dirk Brockmann, Andrew Rambaut +2 more

Online Bayesian Phylodynamic Inference in BEAST with Application to Epidemic Reconstruction

Molecular Biology and Evolution(2020)10.1093/molbev/msaa047

N/A

0DataRank · unranked

1 citations

Philippe Lemey, Marc A. Suchard, Andrew Rambaut, Guy Baele, Mandev S. Gill

Natural selection in the evolution of SARS-CoV-2 in bats, not humans, created a highly capable human pathogen

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.28.122366

N/A

0DataRank · unranked

41 citations

Spyros Lytras, Steven Weaver, Joshua B. Singer, Maciej F. Boni, Philippe Lemey +3 more

Natural selection in the evolution of SARS-CoV-2 in bats created a generalist virus and highly capable human pathogen

PLoS Biology(2021)10.1371/journal.pbio.3001115

N/A

0DataRank · unranked

224 citations

Spyros Lytras, Steven Weaver, Joshua B. Singer, Maciej F. Boni, Philippe Lemey +3 more

Untangling introductions and persistence in COVID-19 resurgence in Europe

Nature(2021)10.1038/s41586-021-03754-2

N/A

0DataRank · unranked

213 citations

Nick Ruktanonchai, Samuel L. Hong, Vittoria Colizza, Chiara Poletto, Frederik Van den Broeck +12 more

Relax, Keep Walking — A Practical Guide to Continuous Phylogeographic Inference with BEAST

Molecular Biology and Evolution(2021)10.1093/molbev/msab031

N/A

0DataRank · unranked

69 citations

Mandev S. Gill, Nuno R. Faria, Andrew Rambaut, Oliver Pybus, Marc A. Suchard +2 more

Bayesian Phylogeographic Analysis Incorporating Predictors and Individual Travel Histories in BEAST

Current Protocols(2021)10.1002/cpz1.98

N/A

0DataRank · unranked

27 citations

Philippe Lemey, Marc A. Suchard, Guy Baele, Samuel L. Hong

Large-scale inference of correlation among mixed-type biological traits with phylogenetic multivariate probit models

The Annals of Applied Statistics(2021)10.1214/20-aoas1394

N/A

0DataRank · unranked

22 citations

Akihiko Nishimura, Paul Bastide, Xiang Ji, Rebecca Payne, Philip Goulder +3 more

Genomics and epidemiology of a novel SARS-CoV-2 lineage in Manaus, Brazil

medRxiv(2021)10.1101/2021.02.26.21252554

N/A

0DataRank · unranked

206 citations

Thomas A. Mellan, Charles Whittaker, Ingra Morales Claro, Darlan da Silva Cândido, Swapnil Mishra +65 more

Predicting the evolution of Lassa Virus endemic area and population at risk over the next decades

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.22.461380

N/A

0DataRank · unranked

8 citations

Liana E. Kafetzopoulou, Wim Thiery, Gytis Dudas, Sophie Gryseels, Anjali Kotamarthi +20 more

Archival influenza virus genomes from Europe reveal genomic and phenotypic variability during the 1918 pandemic

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.14.444134

N/A

0DataRank · unranked

7 citations

Bram Vrancken, Matthias Budt, Ariane Düx, Sébastian Lequime, Şengül Boral +22 more

Respiratory syncytial virus prevention within reach: the vaccine and monoclonal antibody landscape

The Lancet Infectious Diseases(2022)10.1016/s1473-3099(22)00291-2

N/A

0DataRank · unranked

443 citations

Jonne Terstappen, Ranju Baral, Azucena Bardají, Philippe Beutels, Ursula J. Buchholz +36 more

Predicting the evolution of the Lassa virus endemic area and population at risk over the next decades

Nature Communications(2022)10.1038/s41467-022-33112-3

N/A

0DataRank · unranked

94 citations

Liana E. Kafetzopoulou, Wim Thiery, Gytis Dudas, Sophie Gryseels, Anjali Kotamarthi +22 more

Detection of Marburg Virus Disease in Guinea

New England Journal of Medicine(2022)10.1056/nejmc2120183

N/A

0DataRank · unranked

62 citations

Liana E. Kafetzopoulou, Martin Faye, Annick Renevey, Barré Soropogui, Kékoura Ifono +30 more

Early Genomic Surveillance and Phylogeographic Analysis of Getah Virus, a Reemerging Arbovirus, in Livestock in China

Journal of Virology(2022)10.1128/jvi.01091-22

N/A

0DataRank · unranked

39 citations

Simon Dellicour, Ziqing Yan, Michael Veit, Mandev S. Gill, Wanting He +6 more

Accommodating sampling location uncertainty in continuous phylogeography

Virus Evolution(2022)10.1093/ve/veac041

N/A

0DataRank · unranked

15 citations

Philippe Lemey, Marc A. Suchard, Marius Gilbert, Guy Baele, Simon Dellicour

The phylodynamics of SARS-CoV-2 during 2020 in Finland

Communications Medicine(2022)10.1038/s43856-022-00130-7

N/A

0DataRank · unranked

14 citations

Ravi Kant, Frederik Van den Broeck, Maija T. Suvanto, Hussein Alburkat, Jenni Virtanen +22 more

Phycova — a tool for exploring covariates of pathogen spread

Virus Evolution(2022)10.1093/ve/veac015

N/A

0DataRank · unranked

6 citations

Guy Baele, Philippe Lemey, Simon Dellicour, Tim Blokker

The International Virus Bioinformatics Meeting 2022

Viruses(2022)10.3390/v14050973

N/A

0DataRank · unranked

4 citations

Denis Beslic, Dimitri Boeckaerts, Sebastián Duchêne, Enrique González-Tortuero, Andreas Gruber +21 more

Evolution of influenza A virus hemagglutinin H1 and H3 across host species

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.20.488870

N/A

0DataRank · unranked

5 citations

Sairah Khan, Philippe Lemey, Martha I. Nelson, Joshua L. Cherry, Nídia S. Trovão

Renaming of the genus Flavivirus to Orthoflavivirus and extension of binomial species names within the family Flaviviridae

Archives of Virology(2023)10.1007/s00705-023-05835-1

N/A

0DataRank · unranked

260 citations

Martin Beer, Bradley J. Blitvich, Jens Bukh, Xavier de Lamballerie, Jan Felix Drexler +10 more

APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016

Science(2023)10.1126/science.adg8116

N/A

0DataRank · unranked

204 citations

Richard A. Neher, Nnaemeka Ndodo, Vítor Borges, Ben Gannon, João Paulo Gomes +16 more

Accelerated evolution of SARS-CoV-2 in free-ranging white-tailed deer

Nature Communications(2023)10.1038/s41467-023-40706-y

N/A

0DataRank · unranked

69 citations

Sofya K. Garushyants, John Franks, Andrew F. Magee, Steven H. Overend, Devra Huey +24 more

Variant-specific introduction and dispersal dynamics of SARS-CoV-2 in New York City – from Alpha to Omicron

PLoS Pathogens(2023)10.1371/journal.ppat.1011348

N/A

0DataRank · unranked

22 citations

Samuel L. Hong, Verity Hill, Dacia Dimartino, Christian Marier, Paul Zappile +6 more

Newly identified lineages of porcine hemagglutinating encephalomyelitis virus exhibit respiratory phenotype

Virus Evolution(2023)10.1093/ve/vead051

N/A

0DataRank · unranked

18 citations

Dongyan Li, Guy Baele, Jin Zhao, Zhiwen Jiang, Xiang Ji +7 more

Philippe Lemey

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