Loyal A. Goff

Also affiliated with Neurosciences Institute, Johns Hopkins Medicine

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 38 papers. Top paper: “Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks”.

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Nature Protocols(2012)10.1038/nprot.2012.016

N/A

1.4DataRank · unranked

12835 citations

Adam Roberts, Reenal Pattni, Daehwan Kim, Cheryl A. Keller, Harold Pimentel +5 more

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

Genes & Development(2011)10.1101/gad.17446611

N/A

1.2DataRank · unranked

3660 citations

Cole Trapnell, Barbara Tazon-Vega, Prisca Liberali, John L. Rinn, Loyal A. Goff +3 more

Multiple knockout mouse models reveal lincRNAs are required for life and brain development

eLife(2013)10.7554/elife.01749

N/A

0.982DataRank · unranked

697 citations

Loyal A. Goff, Simona Lodato, Boyan Bonev, Abigail F. Groff, Chiara Gerhardinger +21 more

Enter the Matrix: Factorization Uncovers Knowledge from Omics

Trends in Genetics(2018)10.1016/j.tig.2018.07.003

N/A

0.837DataRank · unranked

264 citations

Raman Arora, Alexander V. Favorov, Lana X. Garmire, Casey S. Greene, Loyal A. Goff +7 more

Developmental, cellular, and behavioral phenotypes in a mouse model of congenital hypoplasia of the dentate gyrus

eLife(2020)10.7554/elife.62766

N/A

0.586DataRank · unranked

8 citations

Chantelle E. Terrillion, Claudia Jou, Tina Kleven, Shun Felix Hu, John Williams +10 more

Computational analysis of noncoding RNAs

WIREs RNA(2012)10.1002/wrna.1134

N/A

0.581DataRank · unranked

47 citations

Sebastian Will, David A. Hendrix, Loyal A. Goff, John L. Rinn, Bonnie Berger +2 more

Age-associated changes in lineage composition of the enteric nervous system regulate gut health and disease

eLife(2023)10.7554/elife.88051

N/A

0.547DataRank · unranked

14 citations

Monalee Saha, Jared Slosberg, Alpana Singh, Sushma Nagaraj, Laren Becker +13 more

Enter the matrix: factorization uncovers knowledge from omics Names/Affiliations

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/196915

N/A

0.241DataRank · unranked

4 citations

Raman Arora, Aedín C. Culhane, Alexander V. Favorov, Lana X. Garmire, Casey S. Greene +7 more

Universal prediction of cell cycle position using transfer learning

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.06.438463

N/A

0DataRank · unranked

14 citations

Genevieve L. Stein-O’Brien, Jonathan J. Augustin, Jared Slosberg, Giovanni A. Carosso, Briana L. Winer +5 more

Ret loss-of-function decreases neural crest progenitor proliferation and restricts developmental fate potential during enteric nervous system development

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.28.474390

N/A

0DataRank · unranked

3 citations

Sumantra Chatterjee, Gabrielle H. Cannon, Dallas R. Auer, Holly Ross, Aravinda Chakravarti +2 more

Universal prediction of cell-cycle position using transfer learning

Genome biology(2022)10.1186/s13059-021-02581-y

N/A

0DataRank · unranked

133 citations

Genevieve L. Stein-O’Brien, Jonathan J. Augustin, Jared Slosberg, Giovanni A. Carosso, Briana L. Winer +5 more

The transcription factor Tbx5 regulates direction-selective retinal ganglion cell development and image stabilization

Current Biology(2022)10.1016/j.cub.2022.07.064

N/A

0DataRank · unranked

33 citations

Michael B. Sherman, Takashi Kodama, Preethi Gopal, Zhiwei Pan, James K. Kiraly +5 more

Postnatal Smad3 Inactivation in Murine Smooth Muscle Cells Elicits a Temporally and Regionally Distinct Transcriptional Response

Frontiers in Cardiovascular Medicine(2022)10.3389/fcvm.2022.826495

N/A

0DataRank · unranked

19 citations

Tyler J. Creamer, Muzna Saqib, Wendy Nunez, Rustam Bagirzadeh, LaToya Ann Roker +3 more

Pumping the brakes on RNA velocity – understanding and interpreting RNA velocity estimates

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.19.494717

N/A

0DataRank · unranked

17 citations

Genevieve L. Stein-O’Brien, Leandros Boukas, Loyal A. Goff, Kasper D. Hansen, Shijie Zheng

Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R, and GenePattern Notebook implementations of CoGAPS

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.09.499398

N/A

0DataRank · unranked

6 citations

Ashley Tsang, Jacob T. Mitchell, Emily F. Davis-Marcisak, Thomas D. Sherman, Ted Liefeld +11 more

Pantr2 , a trans-acting lncRNA, modulates the differentiation potential of neural progenitors in vivo

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.07.511381

N/A

0DataRank · unranked

0 citations

Saki Takayangi, Thanh Hoang, Briana L. Winer, Seth Blackshaw, Loyal A. Goff +1 more

Psychedelics reopen the social reward learning critical period

Nature(2023)10.1038/s41586-023-06204-3

N/A

0DataRank · unranked

338 citations

Edward J. Sawyer, Young Jun Song, M. F. Wilkinson, Yasmin Padovan‐Hernandez, Júnia L. de Deus +7 more

Pumping the brakes on RNA velocity by understanding and interpreting RNA velocity estimates

Genome biology(2023)10.1186/s13059-023-03065-x

N/A

0DataRank · unranked

64 citations

Genevieve L. Stein-O’Brien, Leandros Boukas, Loyal A. Goff, Kasper D. Hansen, Shijie Zheng

Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS

Nature Protocols(2023)10.1038/s41596-023-00892-x

N/A

0DataRank · unranked

25 citations

Ashley Tsang, Jacob T. Mitchell, David Zhou, Julia Bowden, Emily F. Davis-Marcisak +13 more

Age-associated changes in lineage composition of the enteric nervous system regulate gut health and disease

eLife(2023)10.7554/elife.88051.2

N/A

0DataRank · unranked

17 citations

Monalee Saha, Jared Slosberg, Alpana Singh, Sushma Nagaraj, Laren Becker +13 more

Cell fate specification and conversion generate foveolar cone subtype patterning in human retinal organoids

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.28.526051

N/A

0DataRank · unranked

4 citations

Kiara C. Eldred, Brian Guy, Clayton P. Santiago, Ian A. Glass, Thomas A. Reh +4 more

BRN1/2 Function in Neocortical Size Determination and Microcephaly

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.02.565322

N/A

0DataRank · unranked

1 citations

Yijun Xu, José P. Llongueras, Rachel Vistein, Loyal A. Goff, Kristina Nielsen +7 more

Reviewer #3 (Public Review): Age-associated changes in lineage composition of the enteric nervous system regulate gut health and disease

(2023)10.7554/elife.88051.1.sa0

N/A

0DataRank · unranked

0 citations

Monalee Saha, Jared Slosberg, Alpana Singh, Sushma Nagaraj, Laren Becker +13 more

Semaphorin 6A in Retinal Ganglion Cells Regulates Functional Specialization of the Inner Retina

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.18.567662

N/A

0DataRank · unranked

0 citations

Natalie R. Hamilton, L. Huffman, R. Jeroen Pasterkamp, Loyal A. Goff, Alex L. Kolodkin +1 more

Physiological regulation of neuronal Wnt activity is essential for TDP-43 localization and function

The EMBO Journal(2024)10.1038/s44318-024-00156-8

N/A

0DataRank · unranked

10 citations

Anna Westerhaus, Macey Wilson, E. Wang, Loyal A. Goff, Shanthini Sockanathan +1 more

Retinal ganglion cell-derived semaphorin 6A segregates starburst amacrine cell dendritic scaffolds to organize the mouse inner retina

Development(2024)10.1242/dev.204293

N/A

0DataRank · unranked

7 citations

Natalie R. Hamilton, L. Huffman, Matthew Brown, Victoria N. Neckles, R. Jeroen Pasterkamp +3 more

Establishment of a conditionally reprogrammed primary eccrine sweat gland culture for evaluation of tissue-specific CFTR function

Journal of Cystic Fibrosis(2024)10.1016/j.jcf.2024.06.013

N/A

0DataRank · unranked

5 citations

Gedge D. Rosson, Noori Kim, Sewon Kang, Karen S. Raraigh, Loyal A. Goff +5 more

Transcriptional profiles of murine oligodendrocyte precursor cells across the lifespan

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.27.620502

N/A

0DataRank · unranked

5 citations

Anya A. Kim, Björn Neumann, Valerie N. Doze, Yu Kang T. Xu, Yevgeniya A. Mironova +5 more

A consensus definition for deep layer 6 excitatory neurons in mouse neocortex

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.04.621933

N/A

0DataRank · unranked

1 citations

Travis A. Babola, Kihwan Lee, Chanel J. Matney, Alina Spiegel, Michael H. Liew +12 more

A consensus definition for deep layer 6 excitatory neurons in mouse somatosensory, visual, and motor cortex

Cell Reports(2025)10.1016/j.celrep.2025.116167

N/A

0DataRank · unranked

5 citations

Travis A. Babola, Kiwoong Lee, Alina Spiegel, Kihwan Lee, Chanel J. Matney +16 more

Regulation of translation elongation and integrated stress response in heat-shocked neurons

Cell Reports(2025)10.1016/j.celrep.2025.115639

N/A

0DataRank · unranked

3 citations

Milad Razavi-Mohseni, Fulya Türker, Priyal Patel, Boyang Hua, Michael A. Beer +3 more

projectR: an R/Bioconductor package for transfer learning via PCA, NMF, correlation and clustering

Bioinformatics(2020)10.1093/bioinformatics/btaa183

N/A

0DataRank · unranked

84 citations

Carlo Colantuoni, Loyal A. Goff, Elana J. Fertig, Genevieve L. Stein-O’Brien, Gaurav Sharma

Parallel Social Information Processing Circuits Are Differentially Impacted in Autism

Neuron(2020)10.1016/j.neuron.2020.10.002

N/A

0DataRank · unranked

82 citations

Genevieve L. Stein-O’Brien, Alejandra V. Patino, Romain Nardou, Cooper D. Grossman, Matthew Brown +8 more

Screening non-MAPT genes of the Chr17q21 H1 haplotype in Parkinson's disease

Parkinsonism & Related Disorders(2020)10.1016/j.parkreldis.2020.07.022

N/A

0DataRank · unranked

19 citations

Ronald L. Walton, Rebecca R. Valentino, Paul W. Hook, Catherine Labbé, Michael G. Heckman +9 more

Mitoregulin Controls β-Oxidation in Human and Mouse Adipocytes

Stem Cell Reports(2020)10.1016/j.stemcr.2020.03.002

N/A

0DataRank · unranked

46 citations

Curtis R. Warren, Haojie Yu, Takafumi Toyohara, Qiurong Ding, Mary H.C. Florido +6 more

A Feedback Mechanism Regulates Odorant Receptor Expression in the Malaria Mosquito, Anopheles gambiae

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.23.218586

N/A

0DataRank · unranked

10 citations

Ali Afify, Loyal A. Goff, Christopher J. Potter, Sarah E. Maguire

Differential expression levels of Sox9 in early neocortical radial glial cells regulate the decision between stem cell maintenance and differentiation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.09.417931

N/A

0DataRank · unranked

3 citations

Jéssica Alves Medeiros de Araújo, Diego Marques‐Coelho, Loyal A. Goff, Ulrich Müller, Cristina Gil +1 more

Differential Expression Levels of Sox9 in Early Neocortical Radial Glial Cells Regulate the Decision between Stem Cell Maintenance and Differentiation

Journal of Neuroscience(2021)10.1523/jneurosci.2905-20.2021

N/A

0DataRank · unranked

20 citations

Jéssica Alves Medeiros de Araújo, Diego Marques‐Coelho, Loyal A. Goff, Marcos R. Costa, Ulrich Müller +2 more