🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Fabio Cumbo

Cleveland Clinic Lerner College of Medicine

ORCID: 0000-0003-2920-5838

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

5.0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

Indice penale(2023)10.1038/s41587-023-01688-w

Top 4%

5.0DataRank

Top 4%1390 citations

Francesco Beghini, Fabio Cumbo, Lauren J. McIver, Kelsey N. Thompson, Moreno Zolfo +21 more

Papers

Driven by 16 papers — median percentile 96. Top paper: “Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases”.

Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases

Nature Medicine(2022)10.1038/s41591-022-01964-3

N/A

7.4DataRank · unranked

362 citations

Michal Punčochář, Nicolai Karcher, Serena Porcari, Federica Armanini, Francesco Asnicar +18 more

The person-to-person transmission landscape of the gut and oral microbiomes

Nature(2023)10.1038/s41586-022-05620-1

N/A

6.8DataRank · unranked

464 citations

Aitor Blanco‐Míguez, Paolo Manghi, Francesco Asnicar, Léonard Dubois, Davide Golzato +38 more

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

Indice penale(2023)10.1038/s41587-023-01688-w

Top 4%

5.0DataRank

Top 4%1390 citations

Francesco Beghini, Fabio Cumbo, Lauren J. McIver, Kelsey N. Thompson, Moreno Zolfo +21 more

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0

Nature Communications(2020)10.1038/s41467-020-16366-7

N/A

1.0DataRank · unranked

917 citations

Andrew Maltez Thomas, Francesco Beghini, Claudia Mengoni, Serena Manara, Paolo Manghi +13 more

The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update

Nucleic Acids Research(2024)10.1093/nar/gkae410

N/A

1.0DataRank · unranked

889 citations

Linelle Ann L Abueg, Enis Afgan, Olivier Allart, Ahmed Awan, Wendi Bacon +95 more

Intestinal Akkermansia muciniphila predicts clinical response to PD-1 blockade in patients with advanced non-small-cell lung cancer

Nature Medicine(2022)10.1038/s41591-021-01655-5

N/A

0.975DataRank · unranked

665 citations

Bertrand Routy, Andrew Maltez Thomas, Valerio Iebba, Gérard Zalcman, S. Friard +38 more

Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly

Genome biology(2021)10.1186/s13059-021-02427-7

N/A

0.762DataRank · unranked

160 citations

Eleonora Nigro, Michal Punčochář, Aitor Blanco‐Míguez, Matteo Ciciani, Paolo Manghi +12 more

MetaPhlAn 4 profiling of unknown species-level genome bins improves the characterization of diet-associated microbiome changes in mice

Cell Reports(2023)10.1016/j.celrep.2023.112464

N/A

0.581DataRank · unranked

47 citations

Aitor Blanco‐Míguez, Serena Manara, Amir Nabinejad, Fabio Cumbo, Francesco Beghini +19 more

Neuroblastoma is associated with alterations in gut microbiome composition subsequent to maternal microbial seeding

EBioMedicine(2023)10.1016/j.ebiom.2023.104917

N/A

0.521DataRank · unranked

13 citations

Paolo Manghi, Fabio Cumbo, Giulia Masetti, Federica Armanini, Francesco Asnicar +9 more

Microbiology Galaxy Lab: The first community-driven gateway for reproducible and FAIR analysis of microbial data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.23.629682

N/A

0.241DataRank · unranked

4 citations

Nikolaos Pechlivanis, Nikolaos Strepis, Pierre Amato, Matthias Bernt, Anshu Bhardwaj +31 more

Characterization of microbial dark matter at scale with MetaSBT and taxonomy-aware Sequence Bloom Trees

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.25.672238

N/A

0.165DataRank · unranked

2 citations

Daniel Blankenberg, Fabio Cumbo

Feature selection with vector-symbolic architectures: a case study on microbial profiles of shotgun metagenomic samples of colorectal cancer

Briefings in Bioinformatics(2025)10.1093/bib/bbaf177

N/A

0DataRank · unranked

7 citations

Simone Truglia, Emanuel Weitschek, Daniel Blankenberg, Fabio Cumbo

An Ontology-based approach for Modelling and Querying Alzheimer’s Disease Data

Research Square(2022)10.21203/rs.3.rs-1813123/v1

N/A

0DataRank · unranked

2 citations

Fabio Cumbo, Giulia Antognoli, Ivan Arisi, Mara D’Onofrio, Federico Perazzoni +8 more

Large-scale classification of metagenomic samples: a comparative analysis of classical machine learning techniques vs a novel brain-inspired hyperdimensional computing approach

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.06.663394

N/A

0DataRank · unranked

1 citations

Fabio Cumbo, Daniel Blankenberg, Jayadev Joshi

Evaluating homophily in networks via HONTO (HOmophily Network TOol): a case study of chromosomal interactions in human PPI networks

Bioinformatics(2022)10.1093/bioinformatics/btac763

N/A

0DataRank · unranked

6 citations

Daniel Blankenberg, Fabio Cumbo, Paolo Giulio Franciosa, Daniele Santoni, Nicola Apollonio

Feature selection with vector-symbolic architectures: a case study on microbial profiles of shotgun metagenomic samples of colorectal cancer

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.18.624180

N/A

0DataRank · unranked

2 citations

Simone Truglia, Emanuel Weitschek, Daniel Blankenberg, Fabio Cumbo