Srinivas Ramachandran

University of Colorado Anschutz Medical Campus

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 28 papers. Top paper: “Nucleation and spreading maintain Polycomb domains every cell cycle”.

Nucleation and spreading maintain Polycomb domains every cell cycle

Cell Reports(2024)10.1016/j.celrep.2024.114090

N/A

0.457DataRank · unranked

20 citations

Srinivas Ramachandran, Giovana M. B. Veronezi

An IDR-dependent mechanism for nuclear receptor control of Mediator interaction with RNA polymerase II

Molecular Cell(2024)10.1016/j.molcel.2024.06.006

N/A

0.396DataRank · unranked

13 citations

Jiaqin Li, Yufei Xiang, Sohail Malik, Supriya V. Vartak, Giovana M. B. Veronezi +11 more

The histone chaperone Spn1 preserves chromatin protections at promoters and nucleosome positioning in open reading frames

G3 Genes Genomes Genetics(2025)10.1093/g3journal/jkaf032

N/A

0.291DataRank · unranked

4 citations

Alexis Zukowski, Catherine A. Radebaugh, Abigail Weirich, Laurie A. Stargell, Srinivas Ramachandran +1 more

G1 length dictates H3K27me3 landscapes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.05.570186

N/A

0.208DataRank · unranked

3 citations

Kamesh Ravichandran, Philip R. Gafken, Sara Martire, Gabriel Boyle, Giovana M. B. Veronezi +6 more

Cooperative Binding of Transcription Factors is a Hallmark of Active Enhancers

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.17.253146

N/A

0.165DataRank · unranked

2 citations

Kami Ahmad, Srinivas Ramachandran, Satyanarayan Rao

Estradiol (E2) concentration shapes the chromatin binding landscape of estrogen receptor alpha

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.108499

N/A

0.104DataRank · unranked

1 citations

Kiran Paul, Satyanarayan Rao, Heather M. Brechbuhl, Carol A. Sartorius, Srinivas Ramachandran +2 more

Automated minimization of steric clashes in protein structures

UNC Libraries(2020)10.17615/kcd9-3213

N/A

0DataRank · unranked

0 citations

Feng Ding, Srinivas Ramachandran, Pradeep Kota, Nikolay V. Dokholyan

Thermodynamic Stability of Histone H3 Is a Necessary but not Sufficient Driving Force for its Evolutionary Conservation

UNC Libraries(2020)10.17615/trh0-9q98

N/A

0DataRank · unranked

0 citations

Brian D. Strahl, Lisa Vogel, Srinivas Ramachandran, Nikolay V. Dokholyan

Statistical Analysis of SHAPE-Directed RNA Secondary Structure Modeling

UNC Libraries(2020)10.17615/5ybt-4921

N/A

0DataRank · unranked

0 citations

Nikolay V. Dokholyan, Kevin M. Weeks, Srinivas Ramachandran, Feng Ding

Thermodynamics of calmodulin binding to cardiac and skeletal muscle ryanodine receptor ion channels

UNC Libraries(2020)10.17615/72jx-xg45

N/A

0DataRank · unranked

0 citations

Daniel A. Pasek, Gerhard Meissner, Ashutosh Tripathy, Srinivas Ramachandran, Nikolay V. Dokholyan +1 more

Structural basis for the sequence-dependent effects of platinum–DNA adducts

UNC Libraries(2020)10.17615/qb08-4g56

N/A

0DataRank · unranked

0 citations

Srinivas Ramachandran, Brenda Temple, Stephen G. Chaney, Nikolay V. Dokholyan

Managing the Steady State Chromatin Landscape by Nucleosome Dynamics

Annual Review of Biochemistry(2022)10.1146/annurev-biochem-032620-104508

N/A

0DataRank · unranked

29 citations

Steven Henikoff, Srinivas Ramachandran, Kami Ahmad

A computational pipeline to visualize DNA-protein binding states using dSMF data

STAR Protocols(2022)10.1016/j.xpro.2022.101299

N/A

0DataRank · unranked

1 citations

Srinivas Ramachandran, Satyanarayan Rao

Nucleation and spreading rejuvenate polycomb domains every cell cycle

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.02.502476

N/A

0DataRank · unranked

8 citations

Srinivas Ramachandran, Giovana M. B. Veronezi

Estradiol (E2) concentration shapes the chromatin binding landscape of the estrogen receptor

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.23.509212

N/A

0DataRank · unranked

1 citations

Kiran Paul, Satyanarayan Rao, Heather M. Brechbuhl, Carol A. Sartorius, Srinivas Ramachandran +2 more

HSV-1 exploits host heterochromatin for nuclear egress

The Journal of Cell Biology(2023)10.1083/jcb.202304106

N/A

0DataRank · unranked

20 citations

Laurel Kelnhofer-Millevolte, Mia R. Brinkley, Hannah E. Arbach, Edward A. Arnold, Saskia Sanders +4 more

Hyperactivating EZH2 to augment H3K27me3 levels in regulatory T cells enhances immune suppression by driving early effector differentiation

Cell Reports(2024)10.1016/j.celrep.2024.114724

N/A

0DataRank · unranked

25 citations

Stephanie Silveria, Merve Özdemir, Srinivas Ramachandran, Michel DuPage, Janneke G. C. Peeters

The impact of cell states on heterochromatin dynamics

Biochemical Journal(2024)10.1042/bcj20240139

N/A

0DataRank · unranked

1 citations

Giovana M. B. Veronezi, Srinivas Ramachandran, Abby Trouth

Metabolic Switch in Endocrine Resistant Estrogen Receptor Positive Breast Cancer

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.28.630631

N/A

0DataRank · unranked

2 citations

Amy Han, Kiran Paul, Travis Nemkov, Srinivas Ramachandran, Ashley V. Ward +6 more

The Histone Chaperone Spn1 Preserves Chromatin Protections at Promoters and Nucleosome Positioning in Open Reading Frames

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.14.585010

N/A

0DataRank · unranked

1 citations

Alexis Zukowski, Catherine A. Radebaugh, Abigail Weirich, Laurie A. Stargell, Srinivas Ramachandran +1 more

Human cytomegalovirus induces neuronal gene expression through IE1 for viral maturation

Nature Communications(2025)10.1038/s41467-025-61915-7

N/A

0DataRank · unranked

2 citations

Julian R. Smith, Daniel H Nguyen, Lea S Wilson, Hannah C Lewis, Edward A. Arnold +9 more

Structural Determinants of Skeletal Muscle Ryanodine Receptor Gating

UNC Libraries(2020)10.17615/e8ca-w452

N/A

0DataRank · unranked

1 citations

Yingwu Mei, Montserrat Samsó, Srinivas Ramachandran, Asima Chakraborty, Gerhard Meissner +2 more

Epigenetically regulated p53 activity maintains intestinal regulatory T cell identity to prevent inflammation

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.29.673118

N/A

0DataRank · unranked

0 citations

Janneke G. C. Peeters, Jenna Vickery, Giovana MB Veronezi, Srinivas Ramachandran, Michel DuPage +1 more

Gaia: automated quality assessment of protein structure models

UNC Libraries(2020)10.17615/t2ch-ad23

N/A

0DataRank · unranked

0 citations

Pradeep Kota, Srinivas Ramachandran, Feng Ding, Nikolay V. Dokholyan

A Structural Model of the Pore-Forming Region of the Skeletal Muscle Ryanodine Receptor (RyR1)

UNC Libraries(2020)10.17615/2pe9-4h32

N/A

0DataRank · unranked

0 citations

Adrian W.R. Serohijos, Le Xu, Srinivas Ramachandran, Nikolay V. Dokholyan, Gerhard Meissner

A Structural Model for Vinculin Insertion into PIP 2 -Containing Membranes and the Effect of Insertion on Vinculin Activation and Localization

UNC Libraries(2020)10.17615/can9-va51

N/A

0DataRank · unranked

0 citations

Clare M. Waterman, Mihir Pershad, Caitlin E. Tolbert, Srinivas Ramachandran, Arpit Tandon +4 more

Non-canonical Bromodomain within DNA-PKcs Promotes DNA Damage Response and Radioresistance through Recognizing an IR-Induced Acetyl-Lysine on H2AX

UNC Libraries(2020)10.17615/mned-p064

N/A

0DataRank · unranked

0 citations

Feng Liu, Jian Jin, Nikolay V. Dokholyan, Xian Chen, Brian D. Strahl +9 more

Flanking Bases Influence the Nature of DNA Distortion by Platinum 1,2-Intrastrand (GG) Cross-Links

UNC Libraries(2020)10.17615/m4ef-pb13

N/A

0DataRank · unranked

0 citations

Stephen G. Chaney, Sharon L. Campbell, Candice L. King, James A. Swenberg, Shantanu Sharma +6 more