Pi-Chuan Chang

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

16.7Author DataRank

Indexed papers

8in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 8 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Human Pangenome Project: a global resource to map genomic diversity

Nature(2022)10.1038/s41586-022-04601-8

Top 4%

5.6DataRank

Top 4%571 citations

Lucinda Antonacci-Fulton, Thibaut Hourlier, Heather A. Lawson, Julian K. Lucas, Adam M. Phillippy +36 more

Papers

Driven by 29 papers — median percentile 70. Top paper: “The Human Pangenome Project: a global resource to map genomic diversity”.

The Human Pangenome Project: a global resource to map genomic diversity

Nature(2022)10.1038/s41586-022-04601-8

Top 4%

5.6DataRank

Top 4%571 citations

Lucinda Antonacci-Fulton, Thibaut Hourlier, Heather A. Lawson, Julian K. Lucas, Adam M. Phillippy +36 more

A draft human pangenome reference

Nature(2023)10.1038/s41586-023-05896-x

Top 4%

5.1DataRank

Top 4%1169 citations

Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Hickey, Glenn +95 more

Pangenome graph construction from genome alignments with Minigraph-Cactus

Nature Biotechnology(2023)10.1038/s41587-023-01793-w

N/A

5.0DataRank · unranked

318 citations

Jean Monlong, Jana Ebler, Adam M. Novak, Jordan M. Eizenga, Yan Gao +94 more

A Draft Human Pangenome Reference

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.09.499321

Top 8%

2.9DataRank

Top 8%74 citations

Mobin Asri, Daniel Doerr, Eoghan Harrington, Hickey, Glenn, Julian K. Lucas +47 more

Increased mutation and gene conversion within human segmental duplications

Nature(2023)10.1038/s41586-023-05895-y

N/A

2.1DataRank · unranked

114 citations

Philip C. Dishuck, William T. Harvey, William S. DeWitt, Xavi Guitart, Michael E. Goldberg +108 more

precisionFDA Truth Challenge V2: Calling variants from short- and long-reads in difficult-to-map regions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.13.380741

Top 11%

2.0DataRank

Top 11%67 citations

Justin Wagner, Jennifer McDaniel, Sarah H. Stephens, Samuel T. Westreich, Anish G. Prasanna +68 more

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

Nature Biotechnology(2019)10.1038/s41587-019-0217-9

N/A

1.1DataRank · unranked

1912 citations

Paul Peluso, William J. Rowell, Pi-Chuan Chang, Richard J. Hall, Gregory T. Concepcion +24 more

Pangenomics enables genotyping of known structural variants in 5202 diverse genomes

Science(2021)10.1126/science.abg8871

N/A

0.909DataRank · unranked

426 citations

Jean Monlong, Xian Chang, Adam M. Novak, Jordan M. Eizenga, Charles Markello +15 more

Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads

Nature Methods(2021)10.1038/s41592-021-01299-w

N/A

0.872DataRank · unranked

333 citations

Trevor Pesout, Pi-Chuan Chang, Maria Nattestad, Alexey Kolesnikov, Sidharth Goel +9 more

Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing

Nature Biotechnology(2022)10.1038/s41587-022-01221-5

N/A

0.722DataRank · unranked

122 citations

John E. Gorzynski, Kishwar Shafin, Dianna G. Fisk, Trevor Pesout, Tanner Jensen +24 more

Recombination between heterologous human acrocentric chromosomes

Nature(2023)10.1038/s41586-023-05976-y

N/A

0.710DataRank · unranked

113 citations

Silvia Buonaiuto, Leonardo Gomes de Lima, Tamara Potapova, Arang Rhie, Sergey Koren +106 more

Haplotype-aware variant calling enables high accuracy in nanopore long-reads using deep neural networks

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.04.433952

N/A

0.524DataRank · unranked

32 citations

Trevor Pesout, Pi-Chuan Chang, Maria Nattestad, Alexey Kolesnikov, Sidharth Goel +8 more

Personalized pangenome references

Nature Methods(2024)10.1038/s41592-024-02407-2

N/A

0.520DataRank · unranked

31 citations

Parsa Eskandar, Matteo Tommaso Ungaro, Hickey, Glenn, Jordan M. Eizenga, Adam M. Novak +7 more

Genotyping common, large structural variations in 5,202 genomes using pangenomes, the Giraffe mapper, and the vg toolkit

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.04.412486

N/A

0.515DataRank · unranked

30 citations

Jean Monlong, Xian Chang, Adam M. Novak, Jordan M. Eizenga, Charles Markello +15 more

Severus detects somatic structural variation and complex rearrangements in cancer genomes using long-read sequencing

Nature Biotechnology(2025)10.1038/s41587-025-02618-8

N/A

0.505DataRank · unranked

28 citations

Asher Bryant, Tanveer Ahmad, Byunggil Yoo, Sergey Aganezov, Anton Goretsky +36 more

Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads

medRxiv(2024)10.1101/2024.03.22.24304756

N/A

0.470DataRank · unranked

22 citations

Asher Bryant, Tanveer Ahmad, Byunggil Yoo, Sergey Aganezov, Anton Goretsky +33 more

DeepSomatic: Accurate somatic small variant discovery for multiple sequencing technologies

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.16.608331

N/A

0.457DataRank · unranked

20 citations

Daniel E. Cook, Pi-Chuan Chang, Alexey Kolesnikov, Lucas Brambrink, Juan Carlos Mier +26 more

Local read haplotagging enables accurate long-read small variant calling

Nature Communications(2024)10.1038/s41467-024-50079-5

N/A

0.457DataRank · unranked

20 citations

Daniel E. Cook, Maria Nattestad, Lucas Brambrink, Brandy McNulty, John E. Gorzynski +9 more

A deep-learning-based RNA-seq germline variant caller

Bioinformatics Advances(2023)10.1093/bioadv/vbad062

N/A

0.396DataRank · unranked

13 citations

Aarti Venkat, Dennis Yelizarov, Yannick Pouliot, Pi-Chuan Chang, Andrew Carroll +2 more

Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100543

Top 50%

0.352DataRank

Top 50%6 citations

Stephanie Greer, Dmitri S. Pavlichin, Bo Zhou, Alexander E. Urban, Tsachy Weissman +94 more

The Platinum Pedigree: A long-read benchmark for genetic variants

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.02.616333

Top 53%

0.321DataRank

Top 53%6 citations

C. Nolan, Tom Mokveld, William J. Rowell, S. Y. Lee, Egor Dolzhenko +26 more

Local read haplotagging enables accurate long-read small variant calling

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.07.556731

N/A

0.241DataRank · unranked

4 citations

Daniel E. Cook, Maria Nattestad, Brandy McNulty, John E. Gorzynski, Sneha D. Goenka +8 more

Using the linear references from the pangenome to discover missing autism variants

Nature Communications(2026)10.1038/s41467-026-68378-4

Top 65%

0.208DataRank

Top 65%3 citations

Jiadong Lin, Michelle D. Noyes, Young-Jun Kwon, Isaac Wong, Nidhi Koundinya +252 more

Characterization of subclonal variants in HG002 Genome in a Bottle reference material as a resource for benchmarking variant callers

Cell Genomics(2025)10.1016/j.xgen.2025.101104

Top 65%

0.208DataRank

Top 65%3 citations

Adetola A. Abdulkadir, Megan H. Cleveland, Jennifer McDaniel, David Jáspez, Luis Alberto Rubio-Rodríguez +33 more

A Complete Pedigree-Based Graph Workflow for Rare Candidate Variant Analysis

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.24.469912

N/A

0.165DataRank · unranked

2 citations

Charles Huang, Álex Rodríguez, Andrew Carroll, Pi-Chuan Chang, Jordan M. Eizenga +4 more

The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.30.569198

N/A

0DataRank · unranked

24 citations

Brandon D. Pickett, Robert S. Harris, Gabrielle A. Hartley, Monika Čechová, Karol Pal +78 more

A complete pedigree-based graph workflow for rare candidate variant analysis

Genome Research(2022)10.1101/gr.276387.121

N/A

0DataRank · unranked

6 citations

Charles Huang, Álex Rodríguez, Andrew Carroll, Pi-Chuan Chang, Jordan M. Eizenga +4 more

Highly accurate assembly polishing with DeepPolisher

Genome Research(2025)10.1101/gr.280149.124

N/A

0DataRank · unranked

8 citations

Mobin Asri, Lucas Brambrink, Prajna Hebbar, Alexey Kolesnikov, Daniel E. Cook +8 more

Personalized Pangenome References

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.13.571553

N/A

0DataRank · unranked

4 citations

Parsa Eskandar, Matteo Tommaso Ungaro, Hickey, Glenn, Jordan M. Eizenga, Adam M. Novak +7 more

Pi-Chuan Chang

Indexed papers

Top data-sharing exemplar

Papers