J. Andrew McCammon

ChemistryPhysics and Astronomy

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Data for Molecular Dynamics Simulations of Escherichia Coli Cytochrome Bd Oxidase with the Amber Force Field

ChemRxiv(2021)10.26434/chemrxiv.14488821

Top 100%

0DataRank

Top 100%0 citations

Christian Seitz, Vinícius Wilian D. Cruzeiro, J. Andrew McCammon, Andreas Goetz, Surl-Hee Ahn

Papers

Driven by 40 papers — median percentile 0. Top paper: “A Multidimensional Strategy to Detect Polypharmacological Targets in the Absence of Structural and Sequence Homology”.

A Multidimensional Strategy to Detect Polypharmacological Targets in the Absence of Structural and Sequence Homology

PLoS Computational Biology(2010)10.1371/journal.pcbi.1000648

N/A

2.7DataRank · unranked

76 citations

Rommie E. Amaro, Lei Xie, Michael D. Urbaniak, Michael A. J. Ferguson, Antti Haapalainen +7 more

A glycan gate controls opening of the SARS-CoV-2 spike protein

Nature Chemistry(2021)10.1038/s41557-021-00758-3

N/A

0.904DataRank · unranked

412 citations

Surl-Hee Ahn, Anthony T. Bogetti, Lorenzo Casalino, Jory A. Goldsmith, E. Seitz +12 more

Elucidation of Cryptic and Allosteric Pockets within the SARS-CoV-2 Main Protease

Journal of Chemical Information and Modeling(2021)10.1021/acs.jcim.1c00140

N/A

0.648DataRank · unranked

74 citations

Rommie E. Amaro, J. Andrew McCammon, Terra Sztain

A glycan gate controls opening of the SARS-CoV-2 spike protein

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.15.431212

N/A

0.639DataRank · unranked

70 citations

Surl-Hee Ahn, Anthony T. Bogetti, Lorenzo Casalino, Jory A. Goldsmith, E. Seitz +12 more

The myosin II coiled-coil domain atomic structure in its native environment

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2024151118

N/A

0.550DataRank · unranked

38 citations

Wen Ma, Zhongjun Hu, Nadia Daneshparvar, Dianne W. Taylor, J. Andrew McCammon +4 more

Architecture and self-assembly of the jumbo bacteriophage nuclear shell

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.14.480162

N/A

0.442DataRank · unranked

18 citations

Amar Deep, Amy Prichard, Christian Seitz, Yajie Gu, Eray Enüstün +10 more

Multiscale computational modeling of the effects of 2’-deoxy-ATP on cardiac muscle calcium handling

Journal of Applied Physics(2023)10.1063/5.0157935

N/A

0.269DataRank · unranked

5 citations

Abigail E. Teitgen, Kimberly J. McCabe, Sophia P. Hirakis, Gary Huber, Michael Regnier +4 more

Gaussian accelerated molecular dynamics with the weighted ensemble method: a hybrid method improves thermodynamic and kinetic sampling

ChemRxiv(2021)10.26434/chemrxiv-2021-2j2zr-v2

N/A

0.241DataRank · unranked

4 citations

Anupam Anand Ojha, Rommie E. Amaro, J. Andrew McCammon, Surl-Hee Ahn

Structure and Dynamic Basis of Molecular Recognition Between Acyltransferase and Carrier Protein in E. coli Fatty Acid Synthesis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.15.098798

N/A

0.208DataRank · unranked

3 citations

Jeffrey T. Mindrebo, Tony D. Davis, Ashay Patel, J. Andrew McCammon, Joseph P. Noel +2 more

Dilated cardiomyopathy mutation in beta-cardiac myosin enhances actin activation of the power stroke and phosphate release

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.10.566646

N/A

0.165DataRank · unranked

2 citations

Jinghua Ge, Wen Ma, David V. Rasicci, Rohini Desetty, J. Andrew McCammon +2 more

Markovian State Models uncover Casein Kinase 1 dynamics that govern circadian period

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.17.633651

N/A

0.104DataRank · unranked

1 citations

Jonathan M. Philpott, Megan R Torgrimson, Alfred M. Freeberg, Rajesh Narasimamurthy, Emília P. Barros +5 more

Gaussian accelerated molecular dynamics with the weighted ensemble method: a hybrid method improves thermodynamics and kinetics sampling

(2021)10.33774/chemrxiv-2021-2j2zr

N/A

0.104DataRank · unranked

1 citations

Anupam Anand Ojha, Rommie E. Amaro, J. Andrew McCammon, Surl-Hee Ahn

Gaussian-Accelerated Molecular Dynamics with the Weighted Ensemble Method: A Hybrid Method Improves Thermodynamic and Kinetic Sampling

Journal of Chemical Theory and Computation(2021)10.1021/acs.jctc.1c00770

N/A

0DataRank · unranked

39 citations

Anupam Anand Ojha, Rommie E. Amaro, J. Andrew McCammon, Surl-Hee Ahn

Multiscale simulations examining glycan shield effects on drug binding to influenza neuraminidase

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.12.248690

N/A

0DataRank · unranked

3 citations

Lorenzo Casalino, Robert Konečný, Gary Huber, Rommie E. Amaro, J. Andrew McCammon +1 more

Decoding allosteric regulation by the acyl carrier protein

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2025597118

N/A

0DataRank · unranked

37 citations

Thomas G. Bartholow, D. John Lee, Lorenzo Casalino, Andrew R. Mitchell, Megan A. Young +4 more

Characterizing protein kinase A (PKA) subunits as macromolecular regulators of PKA RIα liquid–liquid phase separation

The Journal of Chemical Physics(2021)10.1063/5.0049810

N/A

0DataRank · unranked

10 citations

Sanbo Qin, Jason Z. Zhang, J. Andrew McCammon, Jin Zhang, Huan‐Xiang Zhou +1 more

Elucidation of cryptic and allosteric pockets within the SARS-CoV-2 protease

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.23.218784

N/A

0DataRank · unranked

24 citations

Rommie E. Amaro, J. Andrew McCammon, Terra Sztain

Data for molecular dynamics simulations of Escherichia coli cytochrome bd oxidase with the Amber force field

Data in Brief(2021)10.1016/j.dib.2021.107401

N/A

0DataRank · unranked

8 citations

Christian Seitz, Vinícius Wilian D. Cruzeiro, J. Andrew McCammon, Andreas W. Götz, Surl-Hee Ahn

An Open-Source Mesh Generation Platform for Biophysical Modeling Using Realistic Cellular Geometries

Biophysical Journal(2020)10.1016/j.bpj.2019.11.3400

N/A

0DataRank · unranked

37 citations

Justin G. Laughlin, J. B. Moody, Rommie E. Amaro, J. Andrew McCammon, Michael Holst +2 more

Gaussian accelerated molecular dynamics with the weighted ensemble method: a hybrid method improves thermodynamic and kinetic sampling

Figshare(2021)10.33774/chemrxiv-2021-2j2zr-v2

N/A

0DataRank · unranked

3 citations

Anupam Anand Ojha, Rommie E. Amaro, J. Andrew McCammon, Surl-Hee Ahn

Gating mechanism of elongating β-ketoacyl-ACP synthases

Nature Communications(2020)10.1038/s41467-020-15455-x

N/A

0DataRank · unranked

82 citations

Ashay Patel, Woojoo E. Kim, Tony D. Davis, Aochiu Chen, Thomas G. Bartholow +5 more

Data for Molecular Dynamics Simulations of Escherichia Coli Cytochrome Bd Oxidase with the Amber Force Field

ChemRxiv(2021)10.26434/chemrxiv.14488821

Top 100%

0DataRank

Top 100%0 citations

Christian Seitz, Vinícius Wilian D. Cruzeiro, J. Andrew McCammon, Andreas Goetz, Surl-Hee Ahn

Data for Molecular Dynamics Simulations of Escherichia Coli Cytochrome Bd Oxidase with the Amber Force Field

ChemRxiv(2021)10.26434/chemrxiv.14488821.v1

N/A

0DataRank · unranked

0 citations

Christian Seitz, Vinícius Wilian D. Cruzeiro, J. Andrew McCammon, Andreas Goetz, Surl-Hee Ahn

Gaussian accelerated molecular dynamics with the weighted ensemble method: a hybrid method improves thermodynamics and kinetics sampling

ChemRxiv(2021)10.26434/chemrxiv-2021-2j2zr

N/A

0DataRank · unranked

0 citations

Anupam Anand Ojha, Rommie E. Amaro, J. Andrew McCammon, Surl-Hee Ahn

Architecture and self-assembly of the jumbo bacteriophage nuclear shell

Nature(2022)10.1038/s41586-022-05013-4

N/A

0DataRank · unranked

114 citations

Amar Deep, Amy Prichard, Christian Seitz, Yajie Gu, Eray Enüstün +10 more

Lipoprotein-associated phospholipase A 2 : A paradigm for allosteric regulation by membranes

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2102953118

N/A

0DataRank · unranked

34 citations

Daiki Hayashi, Alexis M. Vasquez, Jian Cao, J. Andrew McCammon, Edward A. Dennis +1 more

Investigating Intrinsically Disordered Proteins With Brownian Dynamics

Frontiers in Molecular Biosciences(2022)10.3389/fmolb.2022.898838

N/A

0DataRank · unranked

5 citations

Gary Huber, J. Andrew McCammon, Surl-Hee Ahn

Predicting the effects of dATP on cardiac contraction using multiscale modeling of the sarcomere

Archives of Biochemistry and Biophysics(2020)10.1016/j.abb.2020.108582

N/A

0DataRank · unranked

10 citations

Yasser Aboelkassem, Abigail E. Teitgen, Gary Huber, J. Andrew McCammon, Michael Regnier +2 more

PERIOD phosphorylation leads to feedback inhibition of CK1 activity to control circadian period

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.24.497549

N/A

0DataRank · unranked

1 citations

Alfred M. Freeberg, Jiyoung Park, Kwangjun Lee, Clarisse G. Ricci, Sabrina R. Hunt +11 more

Capturing differences in the regulation of LRRK2 dynamics and conformational states by small molecule kinase inhibitors

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.24.513618

N/A

0DataRank · unranked

1 citations

Wen Ma, Jian Wu, Steve Silletti, J. Andrew McCammon, Susan S. Taylor +1 more

PERIOD phosphorylation leads to feedback inhibition of CK1 activity to control circadian period

Molecular Cell(2023)10.1016/j.molcel.2023.04.019

N/A

0DataRank · unranked

55 citations

Alfred M. Freeberg, Jiyoung Park, Kwangjun Lee, Clarisse G. Ricci, Sabrina R. Hunt +11 more

Capturing Differences in the Regulation of LRRK2 Dynamics and Conformational States by Small Molecule Kinase Inhibitors

ACS Chemical Biology(2023)10.1021/acschembio.2c00868

N/A

0DataRank · unranked

20 citations

Wen Ma, Jian Wu, Pallavi Kaila Sharma, Steve Silletti, J. Andrew McCammon +2 more

Integrating comparative modeling and accelerated simulations reveals conformational and energetic basis of actomyosin force generation

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2215836120

N/A

0DataRank · unranked

14 citations

Shengjun You, Michael Regnier, J. Andrew McCammon, Wen Ma

Glycosylation and Crowded Membrane Effects on Influenza Neuraminidase Stability and Dynamics

The Journal of Physical Chemistry Letters(2023)10.1021/acs.jpclett.3c02524

N/A

0DataRank · unranked

10 citations

İlker Deveci, J. Andrew McCammon, Christian Seitz

Multiscale Simulations Examining Glycan Shield Effects on Drug Binding to Influenza Neuraminidase

Biophysical Journal(2020)10.1016/j.bpj.2020.10.024

N/A

0DataRank · unranked

21 citations

Lorenzo Casalino, Robert Konečný, Gary Huber, Rommie E. Amaro, J. Andrew McCammon +1 more

Interface Engineering of Carrier-Protein-Dependent Metabolic Pathways

ACS Chemical Biology(2023)10.1021/acschembio.3c00238

N/A

0DataRank · unranked

2 citations

Joshua C. Corpuz, Thomas G. Bartholow, Javier O. Sanlley Hernandez, Ziran Jiang, Desirae A. Mellor +5 more

3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007756

N/A

0DataRank · unranked

75 citations

Justin G. Laughlin, Nils Angliviel de La Beaumelle, Rommie E. Amaro, J. Andrew McCammon, Ravi Ramamoorthi +3 more

NetSci: A Library for High Performance Biomolecular Simulation Network Analysis Computation

Journal of Chemical Information and Modeling(2024)10.1021/acs.jcim.4c00899

N/A

0DataRank · unranked

3 citations

Lane Votapka, Marcus Hock, Abigail E. Teitgen, J. Andrew McCammon, Andrew D. McCulloch +2 more

Markovian state models uncover casein kinase 1 dynamics that govern circadian period

Biophysical Journal(2025)10.1016/j.bpj.2025.09.022

N/A

0DataRank · unranked

2 citations

Jonathan M. Philpott, Megan R Torgrimson, Alfred M. Freeberg, Rajesh Narasimamurthy, Emília P. Barros +5 more

AFMPB: An adaptive fast multipole Poisson–Boltzmann solver for calculating electrostatics in biomolecular systems

Carolina Digital Repository (University of North Carolina at Chapel Hill)(2020)10.17615/yanv-rg35

N/A

0DataRank · unranked

0 citations

Xiaolin Cheng, J. Andrew McCammon, Jingfang Huang, Benzhuo Lu

J. Andrew McCammon

Indexed papers

Top data-sharing exemplar

Papers