Eric C. Rouchka

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

8.5Author DataRank

Indexed papers

9in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 9 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Variant analysis of 1,040 SARS-CoV-2 genomes

PLoS ONE(2020)10.1371/journal.pone.0241535

Top 7%

3.1DataRank

Top 7%84 citations

Julia H. Chariker, Donghoon Chung, Eric C. Rouchka

Papers

Driven by 63 papers — median percentile 57. Top paper: “Variant analysis of 1,040 SARS-CoV-2 genomes”.

Variant analysis of 1,040 SARS-CoV-2 genomes

PLoS ONE(2020)10.1371/journal.pone.0241535

Top 7%

3.1DataRank

Top 7%84 citations

Julia H. Chariker, Donghoon Chung, Eric C. Rouchka

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Nature Methods(2024)10.1038/s41592-024-02298-3

Top 8%

2.8DataRank

Top 8%216 citations

Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams +80 more

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.25.550582

Top 20%

0.991DataRank

Top 20%28 citations

Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams +78 more

Phylogenetic and Variant Analysis of 1,040 SARS-CoV-2 Genomes

Preprints.org(2020)10.20944/preprints202005.0396.v1

Top 28%

0.714DataRank

Top 28%9 citations

Julia H. Chariker, Donghoon Chung, Eric C. Rouchka

Reactive myelopoiesis and FX-expressing macrophages triggered by chemotherapy promote cancer lung metastasis

JCI Insight(2023)10.1172/jci.insight.167499

N/A

0.647DataRank · unranked

17 citations

Qian Zhong, Rejeena Shrestha, Jingzhi Wang, Xiaoling Hu, Hong Li +4 more

Consumption of fish oil high-fat diet induces murine hair loss via epidermal fatty acid binding protein in skin macrophages

Cell Reports(2022)10.1016/j.celrep.2022.111804

N/A

0.483DataRank · unranked

24 citations

Rong Jin, Jun Zeng, Yuan Hua, Matthew S. Yorek, Lianliang Liu +14 more

Analysis of Nucleotide Variations in Human G-Quadruplex Forming Regions Associated with Disease States

Genes(2023)10.3390/genes14122125

Top 43%

0.433DataRank

Top 43%9 citations

Julia H. Chariker, Eric C. Rouchka, Aryan Neupane

Reference long-read isoform-aware transcriptomes of 4 human peripheral blood lymphocyte subsets

G3 Genes Genomes Genetics(2022)10.1093/g3journal/jkac253

Top 51%

0.339DataRank

Top 51%7 citations

Julia H. Chariker, Eric C. Rouchka, Easton E. Ford, Elizabeth Hudson, Sabine Waigel +3 more

Intestine epithelial–specific hypoxia-inducible factor-1α overexpression ameliorates western diet–induced MASLD

Hepatology Communications(2024)10.1097/hc9.0000000000000572

N/A

0.268DataRank · unranked

4 citations

Madison S. Taylor, Bradford G. Hill, Xiaohong Li, Eric C. Rouchka, Craig J. McClain +2 more

Natural γδT17 cell development and functional acquisition is governed by the mTORC2-c-Maf-controlled mitochondrial fission pathway

iScience(2023)10.1016/j.isci.2023.106630

N/A

0.241DataRank · unranked

4 citations

Hui Qin, Yihua Cai, Xu Chen, Hong Li, Diego E. Montoya–Durango +11 more

Development and validation of HIV SMRTcap for the characterization of HIV-1 reservoirs across tissues and subtypes

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.01.651657

N/A

0.208DataRank · unranked

3 citations

Steven T. Nadakal, William C. Lauer, Justin T. Kos, Parmit K. Singh, Erin Elliott +29 more

Construction of a Searchable Database for Gene Expression Changes in Spinal Cord Injury Experiments

Journal of Neurotrauma(2023)10.1089/neu.2023.0035

Top 67%

0.173DataRank

Top 67%2 citations

Carlos de Almeida, Randi B. House, Jonah C. Daneshmand, Julia H. Chariker, Sujata Saraswat-Ohri +7 more

Exposure to Fine Particulate Matter Air Pollution Alters mRNA and miRNA Expression in Bone Marrow-Derived Endothelial Progenitor Cells from Mice

Genes(2021)10.3390/genes12071058

N/A

0DataRank · unranked

10 citations

Petra Haberzettl, Daniel J. Conklin, Aruni Bhatnagar, Eric C. Rouchka, Mei Zhang +2 more

Genome-wide expression analysis reveals contrasting regulation of phosphate starvation response (PSR) in root and shoot of Arabidopsis and its association with biotic stress

Environmental and Experimental Botany(2021)10.1016/j.envexpbot.2021.104483

N/A

0DataRank · unranked

16 citations

Sabine Waigel, Eric C. Rouchka, Gurpreet Sandhu, Prabodh Kumar Trivedi, Shivendra V. Sahi +1 more

Sex-Based Differences in Cardiac Gene Expression and Function in BDNF Val66Met Mice

International Journal of Molecular Sciences(2021)10.3390/ijms22137002

N/A

0DataRank · unranked

5 citations

Jeffrey Kristensen, Van Thuan Nguyen, Lauren E. Gansereit, Frank J. Raucci, Julia L. Chariker +9 more

Gene alteration in zebrafish exposed to a mixture of substances of abuse

Environmental Pollution(2021)10.1016/j.envpol.2021.116777

N/A

0DataRank · unranked

13 citations

Shawn Anderson, Tara Croft, Eric C. Rouchka, M. Zhang, Dena R. Hammond-Weinberger +1 more

Ileum Gene Expression in Response to Acute Systemic Inflammation in Mice Chronically Fed Ethanol: Beneficial Effects of Elevated Tissue n-3 PUFAs

International Journal of Molecular Sciences(2021)10.3390/ijms22041582

N/A

0DataRank · unranked

7 citations

Jeffrey Warner, Ying Song, Eric C. Rouchka, Craig J. McClain, Dennis Warner +2 more

The Rapid Assessment of Aggregated Wastewater Samples for Genomic Surveillance of SARS-CoV-2 on a City-Wide Scale

medRxiv(2021)10.1101/2021.08.17.21262170

N/A

0DataRank · unranked

5 citations

Julia L. Chariker, Kumar Saurabh, Sabine Waigel, Wolfgang Zacharias, Mei Zhang +11 more

The induction of peripheral trained immunity in the pancreas incites anti-tumor activity to control pancreatic cancer progression

Nature Communications(2022)10.1038/s41467-022-28407-4

N/A

0DataRank · unranked

111 citations

Rejeena Shrestha, Matthew R. Woeste, Haixun Guo, Xiaoling Hu, Chuanlin Ding +12 more

Combining Community Wastewater Genomic Surveillance with State Clinical Surveillance: A Framework for SARS-CoV-2 Public Health Practice

Food and Environmental Virology(2022)10.1007/s12560-022-09531-2

N/A

0DataRank · unranked

34 citations

Rochelle H. Holm, Ray Yeager, Joseph B. Moore, Eric C. Rouchka, Kevin J. Sokoloski +6 more

Opposing roles of ZEB1 in the cytoplasm and nucleus control cytoskeletal assembly and YAP1 activity

Cell Reports(2022)10.1016/j.celrep.2022.111452

N/A

0DataRank · unranked

18 citations

Xiaoqin Lu, Yao Chen, Geoff Clark, John O. Trent, Míriam Cuatrecasas +8 more

Polychlorinated biphenyls alter hepatic m6A mRNA methylation in a mouse model of environmental liver disease

Environmental Research(2022)10.1016/j.envres.2022.114686

N/A

0DataRank · unranked

17 citations

Kellianne M. Piell, Banrida Wahlang, Kimberly Z. Head, Kalina Andreeva, Eric C. Rouchka +3 more

The Detection of Periodic Reemergence Events of SARS-CoV-2 Delta Strain in Communities Dominated by Omicron

Pathogens(2022)10.3390/pathogens11111249

N/A

0DataRank · unranked

12 citations

Kevin J. Sokoloski, Eric C. Rouchka, Julia H. Chariker, Rochelle H. Holm, Ray Yeager +6 more

Shoc2 controls ERK1/2-driven neural crest development by balancing components of the extracellular matrix

Developmental Biology(2022)10.1016/j.ydbio.2022.10.010

N/A

0DataRank · unranked

10 citations

Lina Abdelmoti, Eric C. Rouchka, Kalina Andreeva, Olivia Tussey, Daileen Landestoy +2 more

Shoc2 controls ERK1/2-driven neural crest development by balancing components of the extracellular matrix

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.13.495941

N/A

0DataRank · unranked

1 citations

Lina Abdelmoti, Eric C. Rouchka, Kalina Andreeva, Olivia Tussey, Daileen Landestoy +2 more

Distinct MicroRNAs Identified in Rabbit Blood Arising from InducedDiabetes and a Surgically Simulated Diabetic Ischemia Complication

MicroRNA(2022)10.2174/2211536611666221005091351

N/A

0DataRank · unranked

0 citations

Sabine Waigel, Julia H. Chariker, Eric C. Rouchka, Sufan Chien, Girish J. Kotwal

Reactive myelopoiesis and FX-expressing monocyte-derived macrophages triggered by chemotherapy promote cancer lung metastasis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.07.519466

N/A

0DataRank · unranked

0 citations

Qian Zhong, Rejeena Shrestha, Jingzhi Wang, Xiaoling Hu, Hong Li +4 more

Inducing trained immunity in pro-metastatic macrophages to control tumor metastasis

Nature Immunology(2023)10.1038/s41590-022-01388-8

N/A

0DataRank · unranked

197 citations

Rejeena Shrestha, Xiaojuan Zhu, Anne E. Geller, Shouzhen Wu, Matthew R. Woeste +18 more

PARP1 Regulates Circular RNA Biogenesis though Control of Transcriptional Dynamics

Cells(2023)10.3390/cells12081160

N/A

0DataRank · unranked

11 citations

Kalpani De Silva, Kalina Andreeva, Zoë Jenkins, Nour Osmani, Eric C. Rouchka +2 more

Disruption of the mouse liver epitranscriptome by long-term aroclor 1260 exposure

Environmental Toxicology and Pharmacology(2023)10.1016/j.etap.2023.104138

N/A

0DataRank · unranked

9 citations

Belinda J. Petri, Kimberly Z. Head, Banrida Wahlang, Raobo Xu, Xiang Zhang +10 more

Structural and Functional Classification of G-Quadruplex Families within the Human Genome

Genes(2023)10.3390/genes14030645

N/A

0DataRank · unranked

8 citations

Julia H. Chariker, Eric C. Rouchka, Aryan Neupane

Altered splicing factor and alternative splicing events in a mouse model of diet- and polychlorinated biphenyl-induced liver disease

Environmental Toxicology and Pharmacology(2023)10.1016/j.etap.2023.104260

N/A

0DataRank · unranked

7 citations

Kellianne M. Piell, Banrida Wahlang, Kimberly Z. Head, Eric C. Rouchka, Juw Won Park +5 more

Dysregulated Cyclic Nucleotide Metabolism in Alcohol-Associated Steatohepatitis: Implications for Novel Targeted Therapies

Biology(2023)10.3390/biology12101321

N/A

0DataRank · unranked

6 citations

Mary Nancy Walter, Walter Rodríguez, Yali Wang, Julia H. Chariker, Eric C. Rouchka +5 more

Structural and functional classification of G-quadruplex families within the human genome

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.09.527851

N/A

0DataRank · unranked

4 citations

Julia H. Chariker, Eric C. Rouchka, Aryan Neupane

Analysis of nucleotide variations in human g-quadruplex forming regions associated with disease states

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.30.526341

N/A

0DataRank · unranked

3 citations

Julia H. Chariker, Eric C. Rouchka, Aryan Neupane

Wastewater and seroprevalence for pandemic preparedness: variant analysis, vaccination effect, and hospitalization forecasting for SARS-CoV-2, in Jefferson County, Kentucky

medRxiv(2023)10.1101/2023.01.06.23284260

N/A

0DataRank · unranked

2 citations

Grzegorz A. Rempała, Boseung Choi, J. Michael Brick, Alok R. Amraotkar, Rachel J. Keith +6 more

Construction of a searchable database for gene expression changes in spinal cord injury experiments

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.01.526630

Top 100%

0DataRank

Top 100%0 citations

Carlos de Almeida, Randi B. House, Jonah C. Daneshmand, Julia H. Chariker, Sujata Saraswat-Ohri +7 more

Persistent SARS-CoV-2 Infection in a Multiple Sclerosis Patient on Ocrelizumab: A Case Report

Research Square(2023)10.21203/rs.3.rs-2768759/v1

N/A

0DataRank · unranked

0 citations

Forest W. Arnold, Julia H. Chariker, Alex Glynn, William C. Lauer, Subathra Marimuthu +4 more

Obesogenic polystyrene microplastic exposures disrupt the gut-liver-adipose axis

Toxicological Sciences(2024)10.1093/toxsci/kfae013

N/A

0DataRank · unranked

35 citations

Ngozi V. Adiele, Daniel Cláudio Oliveira Gomes, Marina V. Malovichko, Daniel J. Conklin, Abigail Ekuban +12 more

Hepatocyte-specific mitogen-activated protein kinase phosphatase 1 in sexual dimorphism and susceptibility to alcohol induced liver injury

Frontiers in Immunology(2024)10.3389/fimmu.2024.1316228

N/A

0DataRank · unranked

6 citations

Diego E. Montoya–Durango, Walter Rodríguez, Yali Wang, Jingwen Zhang, Julia H. Chariker +7 more

Exposure to Fine Particulate Matter Air Pollution Disrupts Erythrocyte Turnover

Circulation Research(2024)10.1161/circresaha.124.324411

N/A

0DataRank · unranked

5 citations

Hector H. Dreyer, Richa Singhal, Eric C. Rouchka, Timothy E. O’Toole, Petra Haberzettl +3 more

Gene Expression and Alternative Splicing Analysis in a Large-Scale Multiple Sclerosis Study

International Journal of Molecular Sciences(2024)10.3390/ijms252211957

N/A

0DataRank · unranked

2 citations

Julia H. Chariker, Juw Won Park, Eric C. Rouchka, Müge Sak

Dynamic SARS-CoV-2 surveillance model combining seroprevalence and wastewater concentrations for post-vaccine disease burden estimates

Communications Medicine(2024)10.1038/s43856-024-00494-y

N/A

0DataRank · unranked

1 citations

Grzegorz A. Rempała, Boseung Choi, J. Michael Brick, Alok R. Amraotkar, Rachel J. Keith +6 more

Bioinformatics analysis of PSAT1 loss identifies downstream pathways regulated in EGFR mutant NSCLC and a selective gene signature for predicting the risk of relapse

Oncology Letters(2024)10.3892/ol.2024.14755

N/A

0DataRank · unranked

0 citations

Sabine Waigel, Kalina Andreeva, Eric C. Rouchka, Brian F. Clem, Rumeysa Biyik‐Sit

Itaconate and obesity-related hormones promote tumor progression – new insights on metabolic dysfunction in early-onset colon cancer

Frontiers in Immunology(2025)10.3389/fimmu.2025.1572985

N/A

0DataRank · unranked

4 citations

Jacob Hallion, Dylan L. Snook, Anne Macleod, Robert J. Beal, Mary A. Parks +9 more

SELEX identifies high-affinity RNA targets for chromatin-binding proteins PARP1 and MeCP2

iScience(2025)10.1016/j.isci.2025.113299

N/A

0DataRank · unranked

4 citations

Kalpani de Silva, Darrell P. Chandler, Richard N Cassidy, Kalina Andreeva, Héjer Dhahri +3 more

Integrated Nanopore and short-read RNA sequencing identifies dysregulation of METTL3- m6A modifications in endocrine therapy- sensitive and resistant breast cancer cells

Functional & Integrative Genomics(2025)10.1007/s10142-025-01658-2

N/A

0DataRank · unranked

3 citations

Kellianne M. Piell, Bailey L Avila-Valdes, Christian G. Stanley, Laura J. Winkler, Johnny Tyler Brown +6 more

Full-length mRNA sequencing resolves novel variation in 5′ UTR length for genes expressed during human CD4 T-cell activation

Immunogenetics(2025)10.1007/s00251-025-01371-1

N/A

0DataRank · unranked

2 citations

Julia H. Chariker, Eric C. Rouchka, Easton E. Ford, Elizabeth Hudson, K. Rasche +6 more

E. coli Biomolecules Increase Glycolysis and Invasive Potential in Lung Adenocarcinoma

Cancers(2025)10.3390/cancers17030380

N/A

0DataRank · unranked

0 citations

Parag P. Shah, Eric C. Rouchka, Brian F. Clem, Calista R. Dean, Natassja Woodrum +4 more

Polychlorinated Biphenyl Exposure Alters tRNA Transcriptome in High-Fat Diet-Fed Mouse Liver

Non-Coding RNA(2025)10.3390/ncrna11030041

N/A

0DataRank · unranked

0 citations

Julia H. Chariker, Kellianne M. Piell, Belinda J. Petri, Eric C. Rouchka, Matthew C. Cave +1 more

Transcription factor c-Maf is a checkpoint that programs macrophages in lung cancer

Journal of Clinical Investigation(2020)10.1172/jci131335

N/A

0DataRank · unranked

183 citations

Zan Tong, Chuanlin Ding, Fengling Luo, Shouzhen Wu, Caijun Wu +15 more

Systematic Analysis of Alternative Splicing in Transcriptomes of Multiple Sclerosis Patient Brain Samples

International Journal of Molecular Sciences(2025)10.3390/ijms26178195

Top 100%

0DataRank

Top 100%0 citations

Julia H. Chariker, Eric C. Rouchka, Müge Sak

rMAPS2: an update of the RNA map analysis and plotting server for alternative splicing regulation

Nucleic Acids Research(2020)10.1093/nar/gkaa237

N/A

0DataRank · unranked

97 citations

Sungbo Jung, Tae Lim Kook, Eric C. Rouchka, Jinwoong Bok, Juw Won Park +1 more

Choice of library size normalization and statistical methods for differential gene expression analysis in balanced two-group comparisons for RNA-seq studies

BMC Genomics(2020)10.1186/s12864-020-6502-7

N/A

0DataRank · unranked

65 citations

Nigel G. F. Cooper, Timothy E. O’Toole, Eric C. Rouchka, Xiaohong Li

Whole Transcriptome Analysis Reveals That Filifactor alocis Modulates TNFα-Stimulated MAPK Activation in Human Neutrophils

Frontiers in Immunology(2020)10.3389/fimmu.2020.00497

N/A

0DataRank · unranked

17 citations

Aruna Vashishta, Max N. Rogers, Eric C. Rouchka, Xiaohong Li, Sabine Waigel +3 more

Glial granules contain germline proteins in the Drosophila brain, which regulate brain transcriptome

Communications Biology(2020)10.1038/s42003-020-01432-z

N/A

0DataRank · unranked

18 citations

Eric C. Rouchka, Alexey L. Arkov, Samuel J. Tindell

Transcriptional signatures of the small intestinal mucosa in response to ethanol in transgenic mice rich in endogenous n3 fatty acids

Scientific Reports(2020)10.1038/s41598-020-76959-6

N/A

0DataRank · unranked

4 citations

Jeffrey Warner, Ying Song, Eric C. Rouchka, Chih‐Yu Chen, Jing X. Kang +4 more

Sex Differences in Dietary Copper-Fructose Interaction-Induced Alterations of Gut Microbial Activity are Not Correlated to Hepatic Steatosis

Research Square(2020)10.21203/rs.3.rs-39202/v1

N/A

0DataRank · unranked

1 citations

Fang Yuan, Xiaohong Li, Xipeng Ma, Xinmin Yin, Eric C. Rouchka +5 more

A specific low-density neutrophil population correlates with hypercoagulation and disease severity in hospitalized COVID-19 patients

JCI Insight(2021)10.1172/jci.insight.148435

N/A

0DataRank · unranked

130 citations

Anne E. Geller, Xiaoling Hu, David Tieri, Chuanlin Ding, Christopher K. Klaes +20 more

Polychlorinated biphenyls altered gut microbiome in CAR and PXR knockout mice exhibiting toxicant-associated steatohepatitis

Toxicology Reports(2021)10.1016/j.toxrep.2021.03.010

N/A

0DataRank · unranked

31 citations

Nicholas C. Alexander, Xiaohong Li, Eric C. Rouchka, Irina Kirpich, Matthew C. Cave +1 more

Induction of interferon response by high viral loads at early stage infection may protect against severe outcomes in COVID-19 patients

Scientific Reports(2021)10.1038/s41598-021-95197-y

N/A

0DataRank · unranked

22 citations

Julia H. Chariker, Brian Alejandro, Robert S. Adcock, Richa Singhal, Julio A. Ramírez +12 more

Analysis of sex differences in dietary copper-fructose interaction-induced alterations of gut microbial activity in relation to hepatic steatosis

Biology of Sex Differences(2021)10.1186/s13293-020-00346-z

N/A

0DataRank · unranked

16 citations

Fang Yuan, Xiaohong Li, Xipeng Ma, Xinmin Yin, Eric C. Rouchka +5 more

Differential gene expression analysis of palbociclib-resistant TNBC via RNA-seq

Breast Cancer Research and Treatment(2021)10.1007/s10549-021-06127-5

N/A

0DataRank · unranked

16 citations

Nadiia Lypova, Conor O’Neill, Xiaohong Li, Eric C. Rouchka, Jason Chesney +2 more

Eric C. Rouchka

Indexed papers

Top data-sharing exemplar

Papers